RchiOBHm_Chr3g0459961
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0020522
Physical Location & Seq
Reverse (-)
8214479 .. 8215244
766 bp
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UTR
Exon/CDS
Intron
PRQ42650

Sequence Viewer

Length: 318 bp
ATGACCCAATTGGTTTACTTGGATGCATTGAGAGCAGTGAAGGGTAGTTTGATTGATTCGAGGAAGCATTTGAGGAATTGGGACAAAGGGGATCCATGTAACGCGAATTGGACCGGAGTTTTGTGTTCTGGTGATGTTGGGACTGATGGATACTTGCATGTTCAAGAGCTGCAACTGCTGAGTATGAATCTCTCAGGAACTTTAGCGCCTAAGCTTGGCAAACTATCTCAACTTCTGATATTAGATTTCATGTGGAATAACTTAAGTGGGACTATACCGAAGGAGATAGGAAACATTACGTCCTTGAAACTCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

105

Amino Acids

11.55

Weight (kDa)

7.79

Isoelectric Point (pI)

16.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 8 - 43 3.5e-09 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 104
AclWI GGATC 2 cut(s) 86, 99
AfiI CCNNNNNNNGG 1 cut(s) 215
AflII CTTAAG 1 cut(s) 262
AgsI TTSAA 2 cut(s) 164, 307
AluBI AGCT 2 cut(s) 169, 214
AluI AGCT 2 cut(s) 169, 214
AlwI GGATC 2 cut(s) 86, 99
ApeKI GCWGC 1 cut(s) 169
ArsI GACNNNNNNTTYG 2 cut(s) 103, 135
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 111
AsuHPI GGTGA 1 cut(s) 143
AvaII GGWCC 1 cut(s) 111
BamHI GGATCC 1 cut(s) 91
BbvI GCAGC 1 cut(s) 156
BccI CCATC 1 cut(s) 140
BciVI GTATCC 1 cut(s) 143
BfoI RGCGCY 1 cut(s) 209
BfrI CTTAAG 1 cut(s) 262
BfuI GTATCC 1 cut(s) 143
BisI GCNGC 1 cut(s) 170
BlsI GCNGC 1 cut(s) 171
Bme18I GGWCC 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 111
BmiI GGNNCC 1 cut(s) 93
BmsI GCATC 1 cut(s) 13
Bpu10I CCTNAGC 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 113
Bsc4I CCNNNNNNNGG 1 cut(s) 215
BseGI GGATG 1 cut(s) 28
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMII CTCAG 2 cut(s) 170, 207
BseXI GCAGC 1 cut(s) 156
Bsh1236I CGCG 1 cut(s) 104
BsiSI CCGG 1 cut(s) 114
BslFI GGGAC 3 cut(s) 95, 154, 283
BslI CCNNNNNNNGG 1 cut(s) 215
BsmFI GGGAC 3 cut(s) 95, 154, 283
Bsp143I GATC 1 cut(s) 91
BspCNI CTCAG 2 cut(s) 171, 206
BspFNI CGCG 1 cut(s) 104
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 2 cut(s) 86, 99
BspTI CTTAAG 1 cut(s) 262
BssMI GATC 1 cut(s) 91
BstAFI CTTAAG 1 cut(s) 262
BstDEI CTNAG 3 cut(s) 179, 193, 210
BstF5I GGATG 1 cut(s) 28
BstFNI CGCG 1 cut(s) 104
BstH2I RGCGCY 1 cut(s) 209
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 1 cut(s) 94
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 2 cut(s) 32, 175
BstNSI RCATGY 1 cut(s) 161
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 156
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
BsuI GTATCC 1 cut(s) 143
BtsCI GGATG 1 cut(s) 28
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 42
CfoI GCGC 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 111
CviAII CATG 3 cut(s) 96, 158, 250
CviJI RGCY 2 cut(s) 169, 214
CviKI_1 RGCY 2 cut(s) 169, 214
DdeI CTNAG 3 cut(s) 179, 193, 210
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 111
EcoT22I ATGCAT 1 cut(s) 28
FaeI CATG 3 cut(s) 99, 161, 253
FaiI YATR 5 cut(s) 97, 159, 185, 251, 275
FaqI GGGAC 3 cut(s) 95, 154, 283
FatI CATG 3 cut(s) 95, 157, 249
Fnu4HI GCNGC 1 cut(s) 170
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 170
GlaI GCGC 1 cut(s) 207
GluI GCNGC 1 cut(s) 170
HaeII RGCGCY 1 cut(s) 209
HapII CCGG 1 cut(s) 114
HhaI GCGC 1 cut(s) 208
Hin1II CATG 3 cut(s) 99, 161, 253
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 2 cut(s) 56, 187
HpaII CCGG 1 cut(s) 114
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 2 cut(s) 164, 195
Hpy8I GTNNAC 1 cut(s) 16
HpyAV CCTTC 2 cut(s) 34, 274
HpyCH4IV ACGT 1 cut(s) 299
HpyCH4V TGCA 3 cut(s) 26, 157, 172
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 175
HpyF3I CTNAG 3 cut(s) 179, 193, 210
HpySE526I ACGT 1 cut(s) 299
Hsp92II CATG 3 cut(s) 99, 161, 253
HspAI GCGC 1 cut(s) 206
Kzo9I GATC 1 cut(s) 91
LpnPI CCDG 3 cut(s) 114, 127, 180
Lsp1109I GCAGC 1 cut(s) 156
LweI GCATC 1 cut(s) 13
MaeII ACGT 1 cut(s) 299
MaeIII GTNAC 1 cut(s) 98
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MfeI CAATTG 1 cut(s) 8
MflI RGATCY 1 cut(s) 91
MluCI AATT 3 cut(s) 8, 76, 106
MnlI CCTC 2 cut(s) 54, 66
Mph1103I ATGCAT 1 cut(s) 28
MseI TTAA 1 cut(s) 263
MspCI CTTAAG 1 cut(s) 262
MspI CCGG 1 cut(s) 114
MunI CAATTG 1 cut(s) 8
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 2 cut(s) 32, 175
NdeII GATC 1 cut(s) 91
NlaIII CATG 3 cut(s) 99, 161, 253
NlaIV GGNNCC 1 cut(s) 93
NsiI ATGCAT 1 cut(s) 28
NspI RCATGY 1 cut(s) 161
PfeI GAWTC 2 cut(s) 56, 187
PkrI GCNGC 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 111
PsuI RGATCY 1 cut(s) 91
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 1 cut(s) 170
Sau3AI GATC 1 cut(s) 91
Sau96I GGNCC 1 cut(s) 111
SetI ASST 3 cut(s) 171, 216, 302
SfaNI GCATC 1 cut(s) 13
SinI GGWCC 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
Sse9I AATT 3 cut(s) 8, 76, 106
TaiI ACGT 1 cut(s) 302
TaqI TCGA 1 cut(s) 59
TasI AATT 3 cut(s) 8, 76, 106
TfiI GAWTC 2 cut(s) 56, 187
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TscAI CASTG 1 cut(s) 42
TseI GCWGC 1 cut(s) 169
TspDTI ATGAA 2 cut(s) 200, 238
TspRI CASTG 1 cut(s) 42
Vha464I CTTAAG 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 111
XceI RCATGY 1 cut(s) 161
Zsp2I ATGCAT 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.