Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000240.1

Orthogroup ID

OG0020522

Physical Location & Seq

Genomic Coordinates Reverse (-)

263153 .. 264123

Gene Structure 971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000240.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgttgtataacttgatggccatcttgaaaaggctggatattggtcttaggctcttgaatggaaacaaactatcgggttccttgcctgatgagctcggttctcttgaaaatctacgtagactacaagttgacgagaaccatctttcagggtcaataccaaaatcatttcttaacttgcgcggcttaaaacacctccatatgaacaacaactccttcagcggccaaattccatctgagatttctgaaatacccgctcttcttcatgtgctcttggataataataacttatctggatatcttccaccagacttctccaacataccagagttgcgcatacttcaactcgataacaacaacttcacgggaactgagattccagctacttatggaaccctttccggattggtaaagttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

138

Amino Acids

15.29

Weight (kDa)

6.04

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020522)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0459961
rosa_multiflora	Rmu_co8045854.1_g000001 Rmu_sc0000240.1_g000050 Rmu_sc0000240.1_g000052 Rmu_sc0000579.1_g000013 Rmu_sc0016534.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	332
AccBSI	CCGCTC	1 cut(s)	254
AccI	GTMKAC	1 cut(s)	118
AccII	CGCG	1 cut(s)	180
AccIII	TCCGGA	1 cut(s)	398
AciI	CCGC	3 cut(s)	180, 219, 252
AcoI	YGGCCR	2 cut(s)	18, 220
AcsI	RAATTY	1 cut(s)	225
AcuI	CTGAAG	1 cut(s)	199
AgsI	TTSAA	4 cut(s)	28, 58, 107, 341
AloI	GAACNNNNNNTCC	4 cut(s)	194, 226, 358, 390
AluBI	AGCT	2 cut(s)	94, 380
AluI	AGCT	2 cut(s)	94, 380
Alw21I	GWGCWC	2 cut(s)	96, 270
Aor13HI	TCCGGA	1 cut(s)	398
AoxI	GGCC	2 cut(s)	18, 220
ApoI	RAATTY	1 cut(s)	225
Asp700I	GAANNNNTTC	1 cut(s)	394
AspLEI	GCGC	2 cut(s)	180, 333
BalI	TGGCCA	1 cut(s)	20
BanII	GRGCYC	1 cut(s)	96
Bbv12I	GWGCWC	2 cut(s)	96, 270
BccI	CCATC	4 cut(s)	10, 29, 147, 238
BisI	GCNGC	2 cut(s)	181, 220
BlsI	GCNGC	2 cut(s)	182, 221
BmiI	GGNNCC	2 cut(s)	79, 391
BsaAI	YACGTR	1 cut(s)	116
BsaBI	GATNNNNATC	1 cut(s)	20
BsaWI	WCCGGW	1 cut(s)	398
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bse8I	GATNNNNATC	1 cut(s)	20
BseAI	TCCGGA	1 cut(s)	398
BseJI	GATNNNNATC	1 cut(s)	20
BseMII	CTCAG	2 cut(s)	225, 360
Bsh1236I	CGCG	1 cut(s)	180
BshFI	GGCC	2 cut(s)	20, 222
BsiHKAI	GWGCWC	2 cut(s)	96, 270
BsiSI	CCGG	1 cut(s)	399
BsnI	GGCC	2 cut(s)	20, 222
Bsp1286I	GDGCHC	2 cut(s)	96, 270
Bsp13I	TCCGGA	1 cut(s)	398
BspACI	CCGC	3 cut(s)	180, 219, 252
BspANI	GGCC	2 cut(s)	20, 222
BspCNI	CTCAG	2 cut(s)	226, 361
BspEI	TCCGGA	1 cut(s)	398
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	2 cut(s)	79, 391
BspQI	GCTCTTC	1 cut(s)	261
BsrBI	CCGCTC	1 cut(s)	254
Bst6I	CTCTTC	1 cut(s)	261
BstBAI	YACGTR	1 cut(s)	116
BstDEI	CTNAG	3 cut(s)	47, 234, 369
BstFNI	CGCG	1 cut(s)	180
BstHHI	GCGC	2 cut(s)	180, 333
BstMWI	GCNNNNNNNGC	1 cut(s)	91
BstSNI	TACGTA	1 cut(s)	116
BstUI	CGCG	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	20, 222
CfoI	GCGC	2 cut(s)	180, 333
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	7 cut(s)	20, 34, 52, 94, 183, 222, 380
CviKI_1	RGCY	7 cut(s)	20, 34, 52, 94, 183, 222, 380
DdeI	CTNAG	3 cut(s)	47, 234, 369
EaeI	YGGCCR	2 cut(s)	18, 220
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Ecl136II	GAGCTC	1 cut(s)	94
Eco105I	TACGTA	1 cut(s)	116
Eco24I	GRGCYC	1 cut(s)	96
Eco32I	GATATC	1 cut(s)	296
Eco53kI	GAGCTC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	199
EcoICRI	GAGCTC	1 cut(s)	94
EcoRV	GATATC	1 cut(s)	296
EcoT38I	GRGCYC	1 cut(s)	96
FaeI	CATG	1 cut(s)	266
FaiI	YATR	7 cut(s)	9, 198, 200, 264, 320, 335, 387
FatI	CATG	1 cut(s)	262
FauI	CCCGC	1 cut(s)	259
FauNDI	CATATG	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	118
Fnu4HI	GCNGC	2 cut(s)	181, 220
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	2 cut(s)	181, 220
FspI	TGCGCA	1 cut(s)	332
GlaI	GCGC	2 cut(s)	179, 332
GluI	GCNGC	2 cut(s)	181, 220
HaeIII	GGCC	2 cut(s)	20, 222
HapII	CCGG	1 cut(s)	399
HhaI	GCGC	2 cut(s)	180, 333
Hin1II	CATG	1 cut(s)	266
Hin6I	GCGC	2 cut(s)	178, 331
HinP1I	GCGC	2 cut(s)	178, 331
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	1 cut(s)	373
HpaII	CCGG	1 cut(s)	399
Hpy166II	GTNNAC	2 cut(s)	119, 130
Hpy188I	TCNGA	2 cut(s)	235, 244
Hpy188III	TCNNGA	5 cut(s)	25, 55, 104, 291, 399
Hpy8I	GTNNAC	2 cut(s)	119, 130
HpyAV	CCTTC	1 cut(s)	223
HpyCH4IV	ACGT	1 cut(s)	115
HpyF10VI	GCNNNNNNNGC	1 cut(s)	91
HpyF3I	CTNAG	3 cut(s)	47, 234, 369
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	1 cut(s)	266
HspAI	GCGC	2 cut(s)	178, 331
Kpn2I	TCCGGA	1 cut(s)	398
LguI	GCTCTTC	1 cut(s)	261
LpnPI	CCDG	8 cut(s)	20, 99, 132, 276, 318, 336, 390, 412
MaeII	ACGT	1 cut(s)	115
MbiI	CCGCTC	1 cut(s)	254
MboII	GAAGA	3 cut(s)	248, 251, 290
MhlI	GDGCHC	2 cut(s)	96, 270
MlsI	TGGCCA	1 cut(s)	20
MluCI	AATT	1 cut(s)	225
MluNI	TGGCCA	1 cut(s)	20
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	1 cut(s)	203
Mox20I	TGGCCA	1 cut(s)	20
MroI	TCCGGA	1 cut(s)	398
MroXI	GAANNNNTTC	1 cut(s)	394
MscI	TGGCCA	1 cut(s)	20
MseI	TTAA	2 cut(s)	171, 185
Msp20I	TGGCCA	1 cut(s)	20
MspA1I	CMGCKG	1 cut(s)	219
MspI	CCGG	1 cut(s)	399
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	1 cut(s)	91
NdeI	CATATG	1 cut(s)	198
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	2 cut(s)	79, 391
NsbI	TGCGCA	1 cut(s)	332
PciSI	GCTCTTC	1 cut(s)	261
PdmI	GAANNNNTTC	1 cut(s)	394
PfeI	GAWTC	1 cut(s)	373
PkrI	GCNGC	2 cut(s)	182, 221
Ppu21I	YACGTR	1 cut(s)	116
Psp124BI	GAGCTC	1 cut(s)	96
PspN4I	GGNNCC	2 cut(s)	79, 391
SacI	GAGCTC	1 cut(s)	96
SapI	GCTCTTC	1 cut(s)	261
SaqAI	TTAA	2 cut(s)	171, 185
SatI	GCNGC	2 cut(s)	181, 220
SduI	GDGCHC	2 cut(s)	96, 270
SetI	ASST	4 cut(s)	96, 118, 195, 382
SnaBI	TACGTA	1 cut(s)	116
Sse9I	AATT	1 cut(s)	225
SsiI	CCGC	3 cut(s)	180, 219, 252
SstI	GAGCTC	1 cut(s)	96
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	1 cut(s)	345
TasI	AATT	1 cut(s)	225
TauI	GCSGC	2 cut(s)	183, 222
TfiI	GAWTC	1 cut(s)	373
Tru1I	TTAA	2 cut(s)	171, 185
Tru9I	TTAA	2 cut(s)	171, 185
TspDTI	ATGAA	2 cut(s)	215, 251
XapI	RAATTY	1 cut(s)	225
XmiI	GTMKAC	1 cut(s)	118
XmnI	GAANNNNTTC	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.