Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000240.1

Orthogroup ID

OG0020522

Physical Location & Seq

Genomic Coordinates Reverse (-)

265773 .. 266160

Gene Structure 388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000240.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

atgttgagactgagattttggggttgcctcattggtctggcttgttcttgcttcttcctagttgcggttgcacaagttactaatccttccgaagtggatgcattgagagcagtgaagggtagtctgattgattccgggaatcatttggggaattgggacaaaggggatccatgtaaagcgaattggactggagttttgtgctccggtgacgttgggactgatggatacttgcatgtccaggagctgtatgtgttcttgtttcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

88

Amino Acids

9.61

Weight (kDa)

5.42

Isoelectric Point (pI)

15.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020522)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0459961
rosa_multiflora	Rmu_co8045854.1_g000001 Rmu_sc0000240.1_g000050 Rmu_sc0000240.1_g000052 Rmu_sc0000579.1_g000013 Rmu_sc0016534.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	65
AclWI	GGATC	2 cut(s)	161, 174
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	237
AluBI	AGCT	1 cut(s)	244
AluI	AGCT	1 cut(s)	244
Alw21I	GWGCWC	1 cut(s)	203
AlwI	GGATC	2 cut(s)	161, 174
AlwNI	CAGNNNCTG	1 cut(s)	244
ArsI	GACNNNNNNTTYG	3 cut(s)	32, 178, 210
AsuC2I	CCSGG	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	218
BamHI	GGATCC	1 cut(s)	166
Bbv12I	GWGCWC	1 cut(s)	203
BccI	CCATC	1 cut(s)	215
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BciT130I	CCWGG	1 cut(s)	239
BciVI	GTATCC	1 cut(s)	218
BcnI	CCSGG	1 cut(s)	136
BfaI	CTAG	1 cut(s)	59
BfuI	GTATCC	1 cut(s)	218
Bme1390I	CCNGG	2 cut(s)	136, 239
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	2 cut(s)	136, 239
BmsI	GCATC	1 cut(s)	88
BpmI	CTGGAG	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	136
BsaWI	WCCGGW	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	239
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseNI	ACTGG	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	203
BsiSI	CCGG	2 cut(s)	135, 204
BslFI	GGGAC	2 cut(s)	170, 229
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmFI	GGGAC	2 cut(s)	170, 229
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	2 cut(s)	161, 174
BsrI	ACTGG	1 cut(s)	193
BssMI	GATC	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	239
BstDEI	CTNAG	1 cut(s)	11
BstF5I	GGATG	1 cut(s)	103
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstNI	CCWGG	1 cut(s)	239
BstNSI	RCATGY	1 cut(s)	236
BstSCI	CCNGG	2 cut(s)	134, 237
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuI	GTATCC	1 cut(s)	218
BtsCI	GGATG	1 cut(s)	103
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	117
CaiI	CAGNNNCTG	1 cut(s)	244
CviAII	CATG	2 cut(s)	171, 233
CviJI	RGCY	2 cut(s)	41, 244
CviKI_1	RGCY	2 cut(s)	41, 244
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	237
EcoT22I	ATGCAT	1 cut(s)	103
FaeI	CATG	2 cut(s)	174, 236
FaiI	YATR	3 cut(s)	172, 234, 249
FaqI	GGGAC	2 cut(s)	170, 229
FatI	CATG	2 cut(s)	170, 232
FokI	GGATG	1 cut(s)	110
FspBI	CTAG	1 cut(s)	59
GsuI	CTGGAG	1 cut(s)	210
HapII	CCGG	2 cut(s)	135, 204
Hin1II	CATG	2 cut(s)	174, 236
HinfI	GANTC	2 cut(s)	131, 139
HpaII	CCGG	2 cut(s)	135, 204
HphI	GGTGA	1 cut(s)	218
Hpy188I	TCNGA	2 cut(s)	91, 126
HpyAV	CCTTC	2 cut(s)	96, 109
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	3 cut(s)	71, 101, 232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	2 cut(s)	174, 236
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	2 cut(s)	206, 241
LpnPI	CCDG	6 cut(s)	23, 148, 174, 217, 224, 251
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	2 cut(s)	76, 206
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	1 cut(s)	46
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	2 cut(s)	151, 181
MnlI	CCTC	1 cut(s)	38
Mph1103I	ATGCAT	1 cut(s)	103
MspI	CCGG	2 cut(s)	135, 204
MspR9I	CCNGG	2 cut(s)	136, 239
MvaI	CCWGG	1 cut(s)	239
MwoI	GCNNNNNNNGC	1 cut(s)	107
NciI	CCSGG	1 cut(s)	136
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	2 cut(s)	174, 236
NlaIV	GGNNCC	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	206
NsiI	ATGCAT	1 cut(s)	103
NspI	RCATGY	1 cut(s)	236
PfeI	GAWTC	2 cut(s)	131, 139
PfoI	TCCNGGA	2 cut(s)	134, 237
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	168
PstNI	CAGNNNCTG	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	166
Sau3AI	GATC	1 cut(s)	166
ScrFI	CCNGG	2 cut(s)	136, 239
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	2 cut(s)	213, 246
SfaNI	GCATC	1 cut(s)	88
Sse9I	AATT	2 cut(s)	151, 181
SsiI	CCGC	1 cut(s)	65
SspMI	CTAG	1 cut(s)	59
StyD4I	CCNGG	2 cut(s)	134, 237
TaiI	ACGT	1 cut(s)	213
TasI	AATT	2 cut(s)	151, 181
TfiI	GAWTC	2 cut(s)	131, 139
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	206
Tsp45I	GTSAC	1 cut(s)	206
TspRI	CASTG	1 cut(s)	117
XceI	RCATGY	1 cut(s)	236
XspI	CTAG	1 cut(s)	59
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.