Rmu_sc0016534.1_g000003
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016534.1
OG0020522
Physical Location & Seq
Reverse (-)
12865 .. 13690
826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016534.1_g000003.1.cds

Sequence Viewer

Length: 387 bp
atgatgcattgtgtttgcaggctcttgaatggaaacaaactatcgggttccttgcctaatgagctcggtaatcttgaaaatctacatagactacaagttgacgagaaccatctttcaggttcaataccaaaatcatttcttcacttgcgcggcttaaaacacctccatatgaacaacaactccttcagcggccaaattccatctgagatttctaaaatacccgctcttcttcatgtgctcttggataataataacttatctggatatcttccaccagacttctccaacataccagagttgcgcatacttcaactcgataacaacaacttcacgggaactgagattccagctacttatggaaccctttccggattggcaaagttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

128

Amino Acids

14.13

Weight (kDa)

6.64

Isoelectric Point (pI)

30.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 302
AccBSI CCGCTC 1 cut(s) 224
AccII CGCG 1 cut(s) 150
AccIII TCCGGA 1 cut(s) 368
AciI CCGC 3 cut(s) 150, 189, 222
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 1 cut(s) 195
AcuI CTGAAG 1 cut(s) 169
AgsI TTSAA 4 cut(s) 28, 77, 123, 311
AloI GAACNNNNNNTCC 4 cut(s) 164, 196, 328, 360
AluBI AGCT 2 cut(s) 64, 350
AluI AGCT 2 cut(s) 64, 350
Alw21I GWGCWC 2 cut(s) 66, 240
Aor13HI TCCGGA 1 cut(s) 368
AoxI GGCC 1 cut(s) 190
ApoI RAATTY 1 cut(s) 195
Asp700I GAANNNNTTC 1 cut(s) 364
AspLEI GCGC 2 cut(s) 150, 303
BanII GRGCYC 1 cut(s) 66
Bbv12I GWGCWC 2 cut(s) 66, 240
BccI CCATC 2 cut(s) 117, 208
BisI GCNGC 2 cut(s) 151, 190
BlsI GCNGC 2 cut(s) 152, 191
BmiI GGNNCC 2 cut(s) 49, 361
BsaWI WCCGGW 1 cut(s) 368
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
BseAI TCCGGA 1 cut(s) 368
BseMII CTCAG 2 cut(s) 195, 330
Bsh1236I CGCG 1 cut(s) 150
BshFI GGCC 1 cut(s) 192
BsiHKAI GWGCWC 2 cut(s) 66, 240
BsiSI CCGG 1 cut(s) 369
BsnI GGCC 1 cut(s) 192
Bsp1286I GDGCHC 2 cut(s) 66, 240
Bsp13I TCCGGA 1 cut(s) 368
BspACI CCGC 3 cut(s) 150, 189, 222
BspANI GGCC 1 cut(s) 192
BspCNI CTCAG 2 cut(s) 196, 331
BspEI TCCGGA 1 cut(s) 368
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 2 cut(s) 49, 361
BspQI GCTCTTC 1 cut(s) 231
BsrBI CCGCTC 1 cut(s) 224
Bst6I CTCTTC 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 20
BstDEI CTNAG 2 cut(s) 204, 339
BstFNI CGCG 1 cut(s) 150
BstHHI GCGC 2 cut(s) 150, 303
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstUI CGCG 1 cut(s) 150
BsuRI GGCC 1 cut(s) 192
Cac8I GCNNGC 1 cut(s) 20
CfoI GCGC 2 cut(s) 150, 303
CviAII CATG 1 cut(s) 233
CviJI RGCY 5 cut(s) 22, 64, 153, 192, 350
CviKI_1 RGCY 5 cut(s) 22, 64, 153, 192, 350
DdeI CTNAG 2 cut(s) 204, 339
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Ecl136II GAGCTC 1 cut(s) 64
Eco24I GRGCYC 1 cut(s) 66
Eco32I GATATC 1 cut(s) 266
Eco53kI GAGCTC 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 169
EcoICRI GAGCTC 1 cut(s) 64
EcoRV GATATC 1 cut(s) 266
EcoT22I ATGCAT 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 66
FaeI CATG 1 cut(s) 236
FaiI YATR 7 cut(s) 87, 168, 170, 234, 290, 305, 357
FatI CATG 1 cut(s) 232
FauI CCCGC 1 cut(s) 229
FauNDI CATATG 1 cut(s) 168
Fnu4HI GCNGC 2 cut(s) 151, 190
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 2 cut(s) 151, 190
FspI TGCGCA 1 cut(s) 302
GlaI GCGC 2 cut(s) 149, 302
GluI GCNGC 2 cut(s) 151, 190
HaeIII GGCC 1 cut(s) 192
HapII CCGG 1 cut(s) 369
HhaI GCGC 2 cut(s) 150, 303
Hin1II CATG 1 cut(s) 236
Hin6I GCGC 2 cut(s) 148, 301
HinP1I GCGC 2 cut(s) 148, 301
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HinfI GANTC 1 cut(s) 343
HpaII CCGG 1 cut(s) 369
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 1 cut(s) 205
Hpy188III TCNNGA 4 cut(s) 25, 74, 261, 369
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 193
HpyCH4V TGCA 2 cut(s) 7, 18
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
HpyF3I CTNAG 2 cut(s) 204, 339
Hsp92II CATG 1 cut(s) 236
HspAI GCGC 2 cut(s) 148, 301
Kpn2I TCCGGA 1 cut(s) 368
LguI GCTCTTC 1 cut(s) 231
LpnPI CCDG 7 cut(s) 4, 102, 246, 288, 306, 360, 382
MbiI CCGCTC 1 cut(s) 224
MboII GAAGA 4 cut(s) 131, 218, 221, 260
MhlI GDGCHC 2 cut(s) 66, 240
MluCI AATT 1 cut(s) 195
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 1 cut(s) 173
Mph1103I ATGCAT 1 cut(s) 9
MroI TCCGGA 1 cut(s) 368
MroXI GAANNNNTTC 1 cut(s) 364
MseI TTAA 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 189
MspI CCGG 1 cut(s) 369
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 61
NdeI CATATG 1 cut(s) 168
NlaIII CATG 1 cut(s) 236
NlaIV GGNNCC 2 cut(s) 49, 361
NsbI TGCGCA 1 cut(s) 302
NsiI ATGCAT 1 cut(s) 9
PciSI GCTCTTC 1 cut(s) 231
PdmI GAANNNNTTC 1 cut(s) 364
PfeI GAWTC 1 cut(s) 343
PkrI GCNGC 2 cut(s) 152, 191
Psp124BI GAGCTC 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 49, 361
SacI GAGCTC 1 cut(s) 66
SapI GCTCTTC 1 cut(s) 231
SaqAI TTAA 1 cut(s) 155
SatI GCNGC 2 cut(s) 151, 190
SduI GDGCHC 2 cut(s) 66, 240
SetI ASST 4 cut(s) 66, 121, 165, 352
Sse9I AATT 1 cut(s) 195
SsiI CCGC 3 cut(s) 150, 189, 222
SstI GAGCTC 1 cut(s) 66
TaqI TCGA 1 cut(s) 315
TasI AATT 1 cut(s) 195
TauI GCSGC 2 cut(s) 153, 192
TfiI GAWTC 1 cut(s) 343
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 185, 221
XapI RAATTY 1 cut(s) 195
XmnI GAANNNNTTC 1 cut(s) 364
Zsp2I ATGCAT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.