Rmu_sc0000579.1_g000013
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000579.1
OG0020522
Physical Location & Seq
Reverse (-)
74736 .. 77636
2901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000579.1_g000013.1.cds

Sequence Viewer

Length: 975 bp
atgttgagactgagattttggggttgcctcattggtgtggcttgttcttgcttcttcctagttgcggttgcacaagttactaatccttctgaagtggatgcattgagagcagtgaagggttgtctgattgattccgggaagcatttggggaattgggacaaaggggatccatgtaaagcgaattggaccggagttttgtgctccggtgatgttgggactgatggatacttgcatgtccaggagctgcaactgctaagtaagaatctctcaggaactttagcgcctgagcttggcaaactatctcaacttctgatattccaccaccaactcatgccgcaccggcaccgccatctccgtccgaactcccccaccatcacgccaccacctcccttgccccagcgagaagcctcccccatcatgaccgttgacccactacgatccgaactcaaaccaacctgcaaggaccgagccacagcatcccaacaaacccgatctctcttgctccctgccaccgataccatcgatccagaaaggaatcacctagatcgaggaagccacgctcactcatcgacatcgcccgtccgacgacagcgtcacgtcggacggaggctcttgaatggaaacaaactatcgggttccttgcctgatgagctcggttctcttgaaaatctacgtagactacaagttgacgagaaccatctttcagggtcaataccaaaatcatttcttaacttgcgcggcttaaaacacctccatatgaacaacaactccttcagcggccaaattccatctgagatttctgaaatacccgctcttcttcatgtgctcttggataataataacttatctggatatcttccaccagacttctccaacataccagagttgcgcatacttcaactcgataacaacaacttcacgggaaccgagattccagctacttatggaaccctttccggattggtaaagttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

324

Amino Acids

35.7

Weight (kDa)

8.7

Isoelectric Point (pI)

45.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 591
Acc16I TGCGCA 1 cut(s) 890
Acc36I ACCTGC 1 cut(s) 464
AccB1I GGYRCC 1 cut(s) 342
AccBSI CCGCTC 1 cut(s) 812
AccI GTMKAC 1 cut(s) 676
AccII CGCG 1 cut(s) 738
AccIII TCCGGA 1 cut(s) 956
AciI CCGC 6 cut(s) 65, 335, 346, 738, 777, 810
AclWI GGATC 4 cut(s) 161, 174, 432, 518
AcoI YGGCCR 1 cut(s) 778
AcsI RAATTY 1 cut(s) 783
AcuI CTGAAG 2 cut(s) 111, 757
AfiI CCNNNNNNNGG 2 cut(s) 64, 290
AgsI TTSAA 3 cut(s) 616, 665, 899
AjiI CACGTC 1 cut(s) 598
AjnI CCWGG 1 cut(s) 237
AloI GAACNNNNNNTCC 4 cut(s) 752, 784, 916, 948
AluBI AGCT 4 cut(s) 244, 289, 652, 938
AluI AGCT 4 cut(s) 244, 289, 652, 938
Alw21I GWGCWC 3 cut(s) 203, 654, 828
AlwI GGATC 4 cut(s) 161, 174, 432, 518
AlwNI CAGNNNCTG 1 cut(s) 244
Aor13HI TCCGGA 1 cut(s) 956
AoxI GGCC 1 cut(s) 778
ApeKI GCWGC 1 cut(s) 244
ApoI RAATTY 1 cut(s) 783
ArsI GACNNNNNNTTYG 3 cut(s) 32, 178, 210
Asp700I GAANNNNTTC 1 cut(s) 952
AspLEI GCGC 3 cut(s) 283, 738, 891
AspS9I GGNCC 2 cut(s) 186, 463
AsuC2I CCSGG 1 cut(s) 136
AsuHPI GGTGA 2 cut(s) 218, 530
AvaII GGWCC 2 cut(s) 186, 463
BamHI GGATCC 1 cut(s) 166
BanI GGYRCC 1 cut(s) 342
BanII GRGCYC 1 cut(s) 654
Bbv12I GWGCWC 3 cut(s) 203, 654, 828
BbvI GCAGC 1 cut(s) 231
BccI CCATC 7 cut(s) 215, 357, 380, 422, 527, 705, 796
BciT130I CCWGG 1 cut(s) 239
BciVI GTATCC 1 cut(s) 218
BcnI CCSGG 1 cut(s) 136
BfaI CTAG 2 cut(s) 59, 542
BfoI RGCGCY 1 cut(s) 284
BfuAI ACCTGC 1 cut(s) 464
BfuI GTATCC 1 cut(s) 218
BglI GCCNNNNNGGC 1 cut(s) 340
BisI GCNGC 4 cut(s) 245, 335, 739, 778
BlsI GCNGC 4 cut(s) 246, 336, 740, 779
Bme1390I CCNGG 2 cut(s) 136, 239
Bme18I GGWCC 2 cut(s) 186, 463
BmgBI CACGTC 1 cut(s) 598
BmgT120I GGNCC 2 cut(s) 186, 463
BmiI GGNNCC 5 cut(s) 168, 344, 637, 925, 949
BmrFI CCNGG 2 cut(s) 136, 239
BmsI GCATC 2 cut(s) 88, 485
Bpu10I CCTNAGC 1 cut(s) 285
BpuMI CCSGG 1 cut(s) 136
Bsa29I ATCGAT 1 cut(s) 522
BsaAI YACGTR 1 cut(s) 674
BsaWI WCCGGW 3 cut(s) 188, 203, 956
BsaXI ACNNNNNCTCC 2 cut(s) 752, 782
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 290
Bse118I RCCGGY 1 cut(s) 339
BseAI TCCGGA 1 cut(s) 956
BseBI CCWGG 1 cut(s) 239
BseCI ATCGAT 1 cut(s) 522
BseGI GGATG 2 cut(s) 103, 476
BseLI CCNNNNNNNGG 2 cut(s) 64, 290
BseMII CTCAG 3 cut(s) 276, 282, 783
BseXI GCAGC 1 cut(s) 231
BseYI CCCAGC 1 cut(s) 396
Bsh1236I CGCG 1 cut(s) 738
BshFI GGCC 1 cut(s) 780
BshNI GGYRCC 1 cut(s) 342
BshVI ATCGAT 1 cut(s) 522
BsiHKAI GWGCWC 3 cut(s) 203, 654, 828
BsiSI CCGG 5 cut(s) 135, 189, 204, 340, 957
BslFI GGGAC 2 cut(s) 170, 229
BslI CCNNNNNNNGG 2 cut(s) 64, 290
BsmFI GGGAC 2 cut(s) 170, 229
BsnI GGCC 1 cut(s) 780
Bsp1286I GDGCHC 3 cut(s) 203, 654, 828
Bsp13I TCCGGA 1 cut(s) 956
Bsp143I GATC 5 cut(s) 166, 437, 491, 523, 544
BspACI CCGC 6 cut(s) 65, 335, 346, 738, 777, 810
BspANI GGCC 1 cut(s) 780
BspCNI CTCAG 3 cut(s) 277, 281, 784
BspDI ATCGAT 1 cut(s) 522
BspEI TCCGGA 1 cut(s) 956
BspFNI CGCG 1 cut(s) 738
BspHI TCATGA 1 cut(s) 417
BspLI GGNNCC 5 cut(s) 168, 344, 637, 925, 949
BspMI ACCTGC 1 cut(s) 464
BspPI GGATC 4 cut(s) 161, 174, 432, 518
BspQI GCTCTTC 1 cut(s) 819
BspT107I GGYRCC 1 cut(s) 342
BsrBI CCGCTC 1 cut(s) 812
BsrFI RCCGGY 1 cut(s) 339
BssAI RCCGGY 1 cut(s) 339
BssMI GATC 5 cut(s) 166, 437, 491, 523, 544
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 424
Bst6I CTCTTC 1 cut(s) 819
BstBAI YACGTR 1 cut(s) 674
BstDEI CTNAG 5 cut(s) 11, 254, 268, 285, 792
BstF5I GGATG 2 cut(s) 103, 476
BstFNI CGCG 1 cut(s) 738
BstH2I RGCGCY 1 cut(s) 284
BstHHI GCGC 3 cut(s) 283, 738, 891
BstKTI GATC 5 cut(s) 169, 440, 494, 526, 547
BstMBI GATC 5 cut(s) 166, 437, 491, 523, 544
BstMWI GCNNNNNNNGC 4 cut(s) 107, 250, 340, 649
BstNI CCWGG 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 236
BstSCI CCNGG 2 cut(s) 134, 237
BstSNI TACGTA 1 cut(s) 674
BstUI CGCG 1 cut(s) 738
BstV1I GCAGC 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
Bsu15I ATCGAT 1 cut(s) 522
BsuI GTATCC 1 cut(s) 218
BsuRI GGCC 1 cut(s) 780
BsuTUI ATCGAT 1 cut(s) 522
BtgZI GCGATG 1 cut(s) 558
BtrI CACGTC 1 cut(s) 598
BtsCI GGATG 2 cut(s) 103, 476
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 117
BveI ACCTGC 1 cut(s) 464
CaiI CAGNNNCTG 1 cut(s) 244
CciI TCATGA 1 cut(s) 417
CfoI GCGC 3 cut(s) 283, 738, 891
Cfr10I RCCGGY 1 cut(s) 339
Cfr13I GGNCC 2 cut(s) 186, 463
ClaI ATCGAT 1 cut(s) 522
CseI GACGC 1 cut(s) 581
CspCI CAANNNNNGTGG 2 cut(s) 372, 407
CviAII CATG 5 cut(s) 171, 233, 331, 418, 821
DdeI CTNAG 5 cut(s) 11, 254, 268, 285, 792
DpnI GATC 5 cut(s) 168, 439, 493, 525, 546
DpnII GATC 5 cut(s) 166, 437, 491, 523, 544
DrdI GACNNNNNNGTC 1 cut(s) 591
DseDI GACNNNNNNGTC 1 cut(s) 591
EaeI YGGCCR 1 cut(s) 778
Eam1104I CTCTTC 1 cut(s) 819
EarI CTCTTC 1 cut(s) 819
Ecl136II GAGCTC 1 cut(s) 652
Eco105I TACGTA 1 cut(s) 674
Eco24I GRGCYC 1 cut(s) 654
Eco32I GATATC 1 cut(s) 854
Eco47I GGWCC 2 cut(s) 186, 463
Eco53kI GAGCTC 1 cut(s) 652
Eco57I CTGAAG 2 cut(s) 111, 757
EcoICRI GAGCTC 1 cut(s) 652
EcoRII CCWGG 1 cut(s) 237
EcoRV GATATC 1 cut(s) 854
EcoT22I ATGCAT 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 654
FaeI CATG 5 cut(s) 174, 236, 334, 421, 824
FaqI GGGAC 2 cut(s) 170, 229
FatI CATG 5 cut(s) 170, 232, 330, 417, 820
FauI CCCGC 1 cut(s) 817
FauNDI CATATG 1 cut(s) 756
FblI GTMKAC 1 cut(s) 676
Fnu4HI GCNGC 4 cut(s) 245, 335, 739, 778
FokI GGATG 2 cut(s) 110, 463
FriOI GRGCYC 1 cut(s) 654
Fsp4HI GCNGC 4 cut(s) 245, 335, 739, 778
FspBI CTAG 2 cut(s) 59, 542
FspI TGCGCA 1 cut(s) 890
GlaI GCGC 3 cut(s) 282, 737, 890
GluI GCNGC 4 cut(s) 245, 335, 739, 778
GsaI CCCAGC 1 cut(s) 400
HaeII RGCGCY 1 cut(s) 284
HaeIII GGCC 1 cut(s) 780
HapII CCGG 5 cut(s) 135, 189, 204, 340, 957
HgaI GACGC 1 cut(s) 581
HhaI GCGC 3 cut(s) 283, 738, 891
Hin1II CATG 5 cut(s) 174, 236, 334, 421, 824
Hin6I GCGC 3 cut(s) 281, 736, 889
HinP1I GCGC 3 cut(s) 281, 736, 889
HincII GTYRAC 2 cut(s) 427, 688
HindII GTYRAC 2 cut(s) 427, 688
HinfI GANTC 4 cut(s) 131, 262, 535, 931
HpaII CCGG 5 cut(s) 135, 189, 204, 340, 957
HphI GGTGA 2 cut(s) 218, 530
Hpy166II GTNNAC 3 cut(s) 427, 677, 688
Hpy188I TCNGA 9 cut(s) 91, 126, 312, 360, 442, 584, 602, 793, 802
Hpy188III TCNNGA 7 cut(s) 270, 418, 527, 613, 662, 849, 957
Hpy8I GTNNAC 3 cut(s) 427, 677, 688
Hpy99I CGWCG 2 cut(s) 588, 602
HpyAV CCTTC 3 cut(s) 96, 109, 781
HpyCH4III ACNGT 1 cut(s) 424
HpyCH4IV ACGT 2 cut(s) 597, 673
HpyCH4V TGCA 5 cut(s) 71, 101, 232, 247, 459
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 250, 340, 649
HpyF3I CTNAG 5 cut(s) 11, 254, 268, 285, 792
HpySE526I ACGT 2 cut(s) 597, 673
Hsp92II CATG 5 cut(s) 174, 236, 334, 421, 824
HspAI GCGC 3 cut(s) 281, 736, 889
Kpn2I TCCGGA 1 cut(s) 956
Kzo9I GATC 5 cut(s) 166, 437, 491, 523, 544
LguI GCTCTTC 1 cut(s) 819
LmnI GCTCC 3 cut(s) 206, 241, 507
Lsp1109I GCAGC 1 cut(s) 231
LweI GCATC 2 cut(s) 88, 485
MaeI CTAG 2 cut(s) 59, 542
MaeII ACGT 2 cut(s) 597, 673
MaeIII GTNAC 2 cut(s) 76, 593
MalI GATC 5 cut(s) 168, 439, 493, 525, 546
MbiI CCGCTC 1 cut(s) 812
MboI GATC 5 cut(s) 166, 437, 491, 523, 544
MboII GAAGA 4 cut(s) 46, 806, 809, 848
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 3 cut(s) 203, 654, 828
MluCI AATT 3 cut(s) 151, 181, 783
MmeI TCCRAC 3 cut(s) 580, 607, 897
MnlI CCTC 6 cut(s) 38, 396, 418, 542, 600, 761
Mph1103I ATGCAT 1 cut(s) 103
MroI TCCGGA 1 cut(s) 956
MroXI GAANNNNTTC 1 cut(s) 952
MseI TTAA 2 cut(s) 729, 743
MslI CAYNNNNRTG 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 777
MspI CCGG 5 cut(s) 135, 189, 204, 340, 957
MspR9I CCNGG 2 cut(s) 136, 239
MvaI CCWGG 1 cut(s) 239
MvnI CGCG 1 cut(s) 738
MwoI GCNNNNNNNGC 4 cut(s) 107, 250, 340, 649
NciI CCSGG 1 cut(s) 136
NdeI CATATG 1 cut(s) 756
NdeII GATC 5 cut(s) 166, 437, 491, 523, 544
NlaIII CATG 5 cut(s) 174, 236, 334, 421, 824
NlaIV GGNNCC 5 cut(s) 168, 344, 637, 925, 949
NmuCI GTSAC 1 cut(s) 593
NsbI TGCGCA 1 cut(s) 890
NsiI ATGCAT 1 cut(s) 103
NspI RCATGY 1 cut(s) 236
PagI TCATGA 1 cut(s) 417
PciSI GCTCTTC 1 cut(s) 819
PdmI GAANNNNTTC 1 cut(s) 952
PfeI GAWTC 4 cut(s) 131, 262, 535, 931
PflFI GACNNNGTC 1 cut(s) 591
PfoI TCCNGGA 2 cut(s) 134, 237
PkrI GCNGC 4 cut(s) 246, 336, 740, 779
Ppu21I YACGTR 1 cut(s) 674
Psp124BI GAGCTC 1 cut(s) 654
Psp6I CCWGG 1 cut(s) 237
PspFI CCCAGC 1 cut(s) 396
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 5 cut(s) 168, 344, 637, 925, 949
PspPI GGNCC 2 cut(s) 186, 463
PstNI CAGNNNCTG 1 cut(s) 244
PsuI RGATCY 1 cut(s) 166
PsyI GACNNNGTC 1 cut(s) 591
RseI CAYNNNNRTG 1 cut(s) 35
SacI GAGCTC 1 cut(s) 654
SapI GCTCTTC 1 cut(s) 819
SaqAI TTAA 2 cut(s) 729, 743
SatI GCNGC 4 cut(s) 245, 335, 739, 778
Sau3AI GATC 5 cut(s) 166, 437, 491, 523, 544
Sau96I GGNCC 2 cut(s) 186, 463
ScrFI CCNGG 2 cut(s) 136, 239
SduI GDGCHC 3 cut(s) 203, 654, 828
SfaNI GCATC 2 cut(s) 88, 485
SinI GGWCC 2 cut(s) 186, 463
SmiMI CAYNNNNRTG 1 cut(s) 35
SnaBI TACGTA 1 cut(s) 674
Sse9I AATT 3 cut(s) 151, 181, 783
SsiI CCGC 6 cut(s) 65, 335, 346, 738, 777, 810
SspMI CTAG 2 cut(s) 59, 542
SstI GAGCTC 1 cut(s) 654
StyD4I CCNGG 2 cut(s) 134, 237
TaaI ACNGT 1 cut(s) 424
TaiI ACGT 2 cut(s) 600, 676
TaqI TCGA 4 cut(s) 522, 547, 569, 903
TaqII GACCGA 1 cut(s) 480
TasI AATT 3 cut(s) 151, 181, 783
TauI GCSGC 3 cut(s) 337, 741, 780
TfiI GAWTC 4 cut(s) 131, 262, 535, 931
Tru1I TTAA 2 cut(s) 729, 743
Tru9I TTAA 2 cut(s) 729, 743
TscAI CASTG 1 cut(s) 117
TseFI GTSAC 1 cut(s) 593
TseI GCWGC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 593
TspDTI ATGAA 2 cut(s) 773, 809
TspGWI ACGGA 2 cut(s) 344, 619
TspRI CASTG 1 cut(s) 117
Tth111I GACNNNGTC 1 cut(s) 591
VpaK11BI GGWCC 2 cut(s) 186, 463
XapI RAATTY 1 cut(s) 783
XceI RCATGY 1 cut(s) 236
XmiI GTMKAC 1 cut(s) 676
XmnI GAANNNNTTC 1 cut(s) 952
XspI CTAG 2 cut(s) 59, 542
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.