RchiOBHm_Chr3g0460201
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0017795
Physical Location & Seq
Reverse (-)
8410612 .. 8411494
883 bp
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UTR
Exon/CDS
Intron
PRQ42673

Sequence Viewer

Length: 420 bp
ATGGTCAGCTACCACTATAGGGCTCCTGAAATTTACTTGGGAGGCAGATACGGCCGCCCGGTCGACATGTGGTCTGTAGGATGTATATTCGCCGAGATGTTGCTGGGCAAACCTCTATTCTATGGACGTGTTAAGGAACAAGCATTGAGCTCCATTTTCAGGACTCTAGGAGTACCAACCGAGGAGCAGTGGCCTGATTGCACTACTCTGCCAAATTGGAATCCCGATTGGAATGCACAAGATTCTGGAGGAGGAGCTGTGGGCTTGGAAGGGATAATTCCTGACATTGATGCATATGGACTTGACCTTTTATATAAAATGCTAACCTATGATCCGGCAAAAAGAATCACGGCTAAACAAGCAATGAAACATCCCTATTTTGACCGAGAACGAGAAACTTTTGAAGACTGGGCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

139

Amino Acids

15.93

Weight (kDa)

4.97

Isoelectric Point (pI)

42.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 2 - 127 9.7e-22 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017795)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0460201 RchiOBHm_Chr3g0460211
rosa_laevigata RLG00000025035
rosa_multiflora Rmu_sc0000449.1_g000043 Rmu_sc0003763.1_g000004
rosa_roxburghii Rroxscaffold_6G00419740
rosa_rugosa Rorug03G0041100
rosa_samantha Rh3AG098600 Rh3BG101800 Rh3CG103900 Rh3DG103100
rosa_wichuraiana Rw3G008340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 63
AciI CCGC 1 cut(s) 55
AclWI GGATC 1 cut(s) 326
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 1 cut(s) 30
AfaI GTAC 1 cut(s) 174
AfiI CCNNNNNNNGG 2 cut(s) 19, 159
AflIII ACRYGT 2 cut(s) 66, 127
AgsI TTSAA 1 cut(s) 404
AhdI GACNNNNNGTC 1 cut(s) 70
AjiI CACGTC 1 cut(s) 128
AluBI AGCT 3 cut(s) 9, 150, 257
AluI AGCT 3 cut(s) 9, 150, 257
Alw21I GWGCWC 1 cut(s) 152
AlwI GGATC 1 cut(s) 326
AoxI GGCC 2 cut(s) 52, 191
ApoI RAATTY 1 cut(s) 30
AsuC2I CCSGG 1 cut(s) 59
BanII GRGCYC 2 cut(s) 25, 152
BbsI GAAGAC 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 152
BceAI ACGGC 2 cut(s) 67, 366
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BcnI CCSGG 1 cut(s) 59
BfaI CTAG 1 cut(s) 167
BfmI CTRYAG 2 cut(s) 16, 75
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 59
BmeRI GACNNNNNGTC 1 cut(s) 70
BmgBI CACGTC 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 59
BmrI ACTGGG 1 cut(s) 418
BmsI GCATC 1 cut(s) 280
BmuI ACTGGG 1 cut(s) 418
BpiI GAAGAC 1 cut(s) 411
BpmI CTGGAG 1 cut(s) 267
BpuMI CCSGG 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 180
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 159
Bse1I ACTGG 1 cut(s) 413
Bse3DI GCAATG 1 cut(s) 369
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 2 cut(s) 86, 370
BseLI CCNNNNNNNGG 2 cut(s) 19, 159
BseMI GCAATG 1 cut(s) 369
BseNI ACTGG 1 cut(s) 413
BseRI GAGGAG 3 cut(s) 197, 264, 267
BseX3I CGGCCG 1 cut(s) 52
BseYI CCCAGC 1 cut(s) 103
Bsh1285I CGRYCG 2 cut(s) 55, 63
BshFI GGCC 2 cut(s) 54, 193
BsiEI CGRYCG 2 cut(s) 55, 63
BsiHKAI GWGCWC 1 cut(s) 152
BsiSI CCGG 2 cut(s) 59, 335
BslI CCNNNNNNNGG 2 cut(s) 19, 159
BsmI GAATGC 1 cut(s) 238
BsnI GGCC 2 cut(s) 54, 193
Bsp1286I GDGCHC 2 cut(s) 25, 152
Bsp143I GATC 1 cut(s) 331
BspACI CCGC 1 cut(s) 55
BspANI GGCC 2 cut(s) 54, 193
BspLI GGNNCC 1 cut(s) 24
BspPI GGATC 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 369
BsrI ACTGG 1 cut(s) 413
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 1 cut(s) 331
BstF5I GGATG 2 cut(s) 86, 370
BstKTI GATC 1 cut(s) 334
BstMBI GATC 1 cut(s) 331
BstMCI CGRYCG 2 cut(s) 55, 63
BstMWI GCNNNNNNNGC 2 cut(s) 51, 359
BstNSI RCATGY 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 57
BstSFI CTRYAG 2 cut(s) 16, 75
BstV2I GAAGAC 1 cut(s) 411
BstZI CGGCCG 1 cut(s) 52
BsuRI GGCC 2 cut(s) 54, 193
BtrI CACGTC 1 cut(s) 128
BtsCI GGATG 2 cut(s) 86, 370
BtsI GCAGTG 1 cut(s) 194
BtsIMutI CAGTG 1 cut(s) 194
Csp6I GTAC 1 cut(s) 173
CviAII CATG 1 cut(s) 67
CviJI RGCY 9 cut(s) 9, 23, 54, 150, 193, 257, 264, 353, 413
CviKI_1 RGCY 9 cut(s) 9, 23, 54, 150, 193, 257, 264, 353, 413
CviQI GTAC 1 cut(s) 173
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
DriI GACNNNNNGTC 1 cut(s) 70
EaeI YGGCCR 1 cut(s) 52
EagI CGGCCG 1 cut(s) 52
Eam1105I GACNNNNNGTC 1 cut(s) 70
Ecl136II GAGCTC 1 cut(s) 150
EclXI CGGCCG 1 cut(s) 52
Eco24I GRGCYC 2 cut(s) 25, 152
Eco52I CGGCCG 1 cut(s) 52
Eco53kI GAGCTC 1 cut(s) 150
EcoICRI GAGCTC 1 cut(s) 150
EcoT22I ATGCAT 1 cut(s) 295
EcoT38I GRGCYC 2 cut(s) 25, 152
FaeI CATG 1 cut(s) 70
FaiI YATR 9 cut(s) 18, 68, 86, 123, 295, 297, 313, 315, 330
FatI CATG 1 cut(s) 66
FauNDI CATATG 1 cut(s) 295
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 1 cut(s) 55
FokI GGATG 2 cut(s) 93, 357
FriOI GRGCYC 2 cut(s) 25, 152
Fsp4HI GCNGC 1 cut(s) 55
FspBI CTAG 1 cut(s) 167
GluI GCNGC 1 cut(s) 55
GsaI CCCAGC 1 cut(s) 107
GsuI CTGGAG 1 cut(s) 267
HaeIII GGCC 2 cut(s) 54, 193
HapII CCGG 2 cut(s) 59, 335
Hin1II CATG 1 cut(s) 70
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 4 cut(s) 163, 220, 242, 345
HpaII CCGG 2 cut(s) 59, 335
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 1 cut(s) 419
Hpy188III TCNNGA 5 cut(s) 26, 160, 224, 246, 281
Hpy8I GTNNAC 1 cut(s) 64
HpyAV CCTTC 1 cut(s) 263
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 3 cut(s) 201, 236, 293
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 359
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 1 cut(s) 70
Kzo9I GATC 1 cut(s) 331
LmnI GCTCC 4 cut(s) 28, 155, 184, 254
LpnPI CCDG 9 cut(s) 39, 72, 89, 145, 207, 231, 294, 348, 394
LweI GCATC 1 cut(s) 280
MaeI CTAG 1 cut(s) 167
MaeII ACGT 1 cut(s) 127
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MboII GAAGA 1 cut(s) 416
MhlI GDGCHC 2 cut(s) 25, 152
MluCI AATT 3 cut(s) 30, 214, 276
MlyI GAGTC 1 cut(s) 157
MnlI CCTC 5 cut(s) 35, 123, 175, 242, 245
Mph1103I ATGCAT 1 cut(s) 295
MseI TTAA 1 cut(s) 132
MspI CCGG 2 cut(s) 59, 335
MspR9I CCNGG 1 cut(s) 59
Mva1269I GAATGC 1 cut(s) 238
MwoI GCNNNNNNNGC 2 cut(s) 51, 359
NciI CCSGG 1 cut(s) 59
NdeI CATATG 1 cut(s) 295
NdeII GATC 1 cut(s) 331
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 1 cut(s) 24
NmeAIII GCCGAG 1 cut(s) 118
NsiI ATGCAT 1 cut(s) 295
NspI RCATGY 1 cut(s) 70
PciI ACATGT 1 cut(s) 66
PctI GAATGC 1 cut(s) 238
PfeI GAWTC 3 cut(s) 220, 242, 345
PkrI GCNGC 1 cut(s) 56
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PscI ACATGT 1 cut(s) 66
Psp124BI GAGCTC 1 cut(s) 152
PspFI CCCAGC 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 24
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
SacI GAGCTC 1 cut(s) 152
SalI GTCGAC 1 cut(s) 62
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 1 cut(s) 55
Sau3AI GATC 1 cut(s) 331
SchI GAGTC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 59
SduI GDGCHC 2 cut(s) 25, 152
SetI ASST 7 cut(s) 11, 115, 130, 152, 259, 309, 329
SfaNI GCATC 1 cut(s) 280
SfcI CTRYAG 2 cut(s) 16, 75
Sse9I AATT 3 cut(s) 30, 214, 276
SsiI CCGC 1 cut(s) 55
SspMI CTAG 1 cut(s) 167
SstI GAGCTC 1 cut(s) 152
StyD4I CCNGG 1 cut(s) 57
TaiI ACGT 1 cut(s) 130
TaqI TCGA 1 cut(s) 63
TaqII GACCGA 1 cut(s) 399
TasI AATT 3 cut(s) 30, 214, 276
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 3 cut(s) 220, 242, 345
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 1 cut(s) 194
TspDTI ATGAA 1 cut(s) 380
TspRI CASTG 1 cut(s) 194
XapI RAATTY 1 cut(s) 30
XceI RCATGY 1 cut(s) 70
XmiI GTMKAC 1 cut(s) 63
XspI CTAG 1 cut(s) 167
Zsp2I ATGCAT 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.