Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0017795

Physical Location & Seq

Genomic Coordinates Reverse (-)

8311067 .. 8311987

Gene Structure 921 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG103100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGAATTAGGGGCGGGAGGAGTAGTAAATACCGTGTGGGAGTTGTACGAGAGTAAGGGGAAGATAGGGAGTGGACGCTACGGAGCTGTGCATGAGGCGGTTCAAAAGGCTACGGGCCAAACTGTGGCTTTGAAGGAATTCGAGCACCCAGGTGATGGGCAAGGCTTCACTCCTGAGATTCTTCGCGAAGTGGCTCTTCTCAAAGACCTGAATCAGTCCAGATATGTTGTAGATCTCATCGACGTTGAGACTCCAAGATCATCGGATACAAGTATCTATCTCGTTTTCGAGTATCTGGACATGAACTTGGGCCACTACATTAGCAAGTTTGAACCGGGATTAATGCCGAGACGGACCATCAAGATGTTTGTGTTTAGTCTCTGCAAGGGGATGGCTCACATTCACTCACATTTTGTGATACATCGAGACCTCAAATCTGACAATCTTTTCGTGGATGAAAAGCGAATGATCCTCAAGATCGGAGATCTTGGAGTTAGTCGCTCCATTACTACCCCCGCCACGGCTTTAACACCTGACATGGACTCTAGGAGTACCAACCGAGGAGCAGTGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000082 GO:0000278 GO:0000307 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009888 GO:0009889 GO:0009987 GO:0010016 GO:0010033 GO:0010103 GO:0010154 GO:0010374 GO:0010376 GO:0010389 GO:0010440 GO:0010444 GO:0010468 GO:0010556 GO:0010564 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0022414 GO:0023052 GO:0030154 GO:0030332 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032875 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0036211 GO:0040007 GO:0042023 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0060560 GO:0061458 GO:0061695 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097472 GO:0099402 GO:0140096 GO:1901360 GO:1901564 GO:1901576 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902806 GO:1902911 GO:1903047 GO:1990234 GO:2000026 GO:2000037 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

191

Amino Acids

21.22

Weight (kDa)

6.38

Isoelectric Point (pI)

33.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	16 - 174	9.1e-35	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	19 - 171	3.1e-22	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017795)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0460201 RchiOBHm_Chr3g0460211
rosa_laevigata	RLG00000025035
rosa_multiflora	Rmu_sc0000449.1_g000043 Rmu_sc0003763.1_g000004
rosa_roxburghii	Rroxscaffold_6G00419740
rosa_rugosa	Rorug03G0041100
rosa_samantha	Rh3AG098600 Rh3BG101800 Rh3CG103900 Rh3DG103100
rosa_wichuraiana	Rw3G008340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	124, 155
AccII	CGCG	1 cut(s)	186
AciI	CCGC	3 cut(s)	14, 98, 516
AclWI	GGATC	1 cut(s)	463
AcsI	RAATTY	1 cut(s)	137
AfaI	GTAC	2 cut(s)	47, 553
AfiI	CCNNNNNNNGG	3 cut(s)	124, 155, 520
AgsI	TTSAA	3 cut(s)	104, 133, 332
AjnI	CCWGG	1 cut(s)	148
AleI	CACNNNNGTG	1 cut(s)	150
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	4 cut(s)	242, 343, 383, 420
AlwI	GGATC	1 cut(s)	463
AoxI	GGCC	3 cut(s)	115, 310, 570
ApoI	RAATTY	1 cut(s)	137
ArsI	GACNNNNNNTTYG	2 cut(s)	431, 463
AseI	ATTAAT	1 cut(s)	341
Asp700I	GAANNNNTTC	1 cut(s)	137
AspS9I	GGNCC	3 cut(s)	115, 310, 354
AsuC2I	CCSGG	1 cut(s)	336
AsuHPI	GGTGA	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	354
Bbv12I	GWGCWC	1 cut(s)	147
BccI	CCATC	3 cut(s)	149, 365, 385
BceAI	ACGGC	1 cut(s)	537
BciT130I	CCWGG	1 cut(s)	150
BciVI	GTATCC	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	336
BcoDI	GTCTC	4 cut(s)	242, 343, 383, 420
BfaI	CTAG	1 cut(s)	546
BfuI	GTATCC	1 cut(s)	259
BglII	AGATCT	2 cut(s)	232, 484
Bme1390I	CCNGG	2 cut(s)	150, 336
Bme18I	GGWCC	1 cut(s)	354
BmgT120I	GGNCC	3 cut(s)	115, 310, 354
BmrFI	CCNGG	2 cut(s)	150, 336
BpuEI	CTTGAG	1 cut(s)	458
BpuMI	CCSGG	1 cut(s)	336
BsaI	GGTCTC	1 cut(s)	420
BsaJI	CCNNGG	3 cut(s)	148, 519, 559
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 155, 520
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	3 cut(s)	148, 519, 559
BseGI	GGATG	2 cut(s)	396, 460
BseLI	CCNNNNNNNGG	3 cut(s)	124, 155, 520
BseMII	CTCAG	1 cut(s)	165
BseRI	GAGGAG	2 cut(s)	33, 576
Bsh1236I	CGCG	1 cut(s)	186
BshFI	GGCC	3 cut(s)	117, 312, 572
BsiHKAI	GWGCWC	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	335
BslI	CCNNNNNNNGG	3 cut(s)	124, 155, 520
BsmAI	GTCTC	4 cut(s)	242, 343, 383, 420
BsmBI	CGTCTC	1 cut(s)	343
BsnI	GGCC	3 cut(s)	117, 312, 572
Bso31I	GGTCTC	1 cut(s)	420
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	5 cut(s)	232, 257, 468, 477, 484
Bsp68I	TCGCGA	1 cut(s)	186
BspACI	CCGC	3 cut(s)	14, 98, 516
BspANI	GGCC	3 cut(s)	117, 312, 572
BspCNI	CTCAG	1 cut(s)	166
BspFNI	CGCG	1 cut(s)	186
BspPI	GGATC	1 cut(s)	463
BspQI	GCTCTTC	1 cut(s)	201
BspTNI	GGTCTC	1 cut(s)	420
BssECI	CCNNGG	3 cut(s)	148, 519, 559
BssMI	GATC	5 cut(s)	232, 257, 468, 477, 484
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	2 cut(s)	34, 124
Bst6I	CTCTTC	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	174
BstDSI	CCRYGG	1 cut(s)	519
BstF5I	GGATG	2 cut(s)	396, 460
BstFNI	CGCG	1 cut(s)	186
BstKTI	GATC	5 cut(s)	235, 260, 471, 480, 487
BstMAI	GTCTC	4 cut(s)	242, 343, 383, 420
BstMBI	GATC	5 cut(s)	232, 257, 468, 477, 484
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	2 cut(s)	148, 334
BstUI	CGCG	1 cut(s)	186
BstX2I	RGATCY	2 cut(s)	232, 484
BstYI	RGATCY	2 cut(s)	232, 484
BsuI	GTATCC	1 cut(s)	259
BsuRI	GGCC	3 cut(s)	117, 312, 572
BtgI	CCRYGG	1 cut(s)	519
BtsCI	GGATG	2 cut(s)	396, 460
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	1 cut(s)	573
BtuMI	TCGCGA	1 cut(s)	186
Cfr13I	GGNCC	3 cut(s)	115, 310, 354
CseI	GACGC	1 cut(s)	84
Csp6I	GTAC	2 cut(s)	46, 552
CviAII	CATG	3 cut(s)	92, 301, 538
CviQI	GTAC	2 cut(s)	46, 552
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	5 cut(s)	234, 259, 470, 479, 486
DpnII	GATC	5 cut(s)	232, 257, 468, 477, 484
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco31I	GGTCTC	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	354
EcoRI	GAATTC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	148
Esp3I	CGTCTC	1 cut(s)	343
FaeI	CATG	3 cut(s)	95, 304, 541
FaiI	YATR	4 cut(s)	93, 225, 302, 539
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FatI	CATG	3 cut(s)	91, 300, 537
FauI	CCCGC	2 cut(s)	7, 523
FokI	GGATG	2 cut(s)	403, 467
FspBI	CTAG	1 cut(s)	546
HaeIII	GGCC	3 cut(s)	117, 312, 572
HapII	CCGG	1 cut(s)	335
HgaI	GACGC	1 cut(s)	84
Hin1II	CATG	3 cut(s)	95, 304, 541
HinfI	GANTC	4 cut(s)	178, 211, 250, 542
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	3 cut(s)	265, 439, 482
Hpy188III	TCNNGA	7 cut(s)	173, 185, 219, 296, 361, 425, 475
Hpy8I	GTNNAC	1 cut(s)	74
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	2 cut(s)	34, 124
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	2 cut(s)	91, 384
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	3 cut(s)	95, 304, 541
Kzo9I	GATC	5 cut(s)	232, 257, 468, 477, 484
LguI	GCTCTTC	1 cut(s)	201
LmnI	GCTCC	3 cut(s)	83, 506, 563
LpnPI	CCDG	8 cut(s)	135, 162, 186, 221, 232, 281, 348, 546
MaeI	CTAG	1 cut(s)	546
MaeII	ACGT	1 cut(s)	243
MalI	GATC	5 cut(s)	234, 259, 470, 479, 486
MboI	GATC	5 cut(s)	232, 257, 468, 477, 484
MboII	GAAGA	3 cut(s)	73, 173, 188
MflI	RGATCY	2 cut(s)	232, 484
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	2 cut(s)	5, 137
MlyI	GAGTC	2 cut(s)	244, 536
MnlI	CCTC	5 cut(s)	11, 88, 440, 482, 554
MroXI	GAANNNNTTC	1 cut(s)	137
MseI	TTAA	2 cut(s)	341, 527
MslI	CAYNNNNRTG	2 cut(s)	150, 362
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	2 cut(s)	150, 336
MvaI	CCWGG	1 cut(s)	150
MvnI	CGCG	1 cut(s)	186
NciI	CCSGG	1 cut(s)	336
NdeII	GATC	5 cut(s)	232, 257, 468, 477, 484
NlaIII	CATG	3 cut(s)	95, 304, 541
NmeAIII	GCCGAG	1 cut(s)	372
NruI	TCGCGA	1 cut(s)	186
OliI	CACNNNNGTG	1 cut(s)	150
PciSI	GCTCTTC	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	137
PfeI	GAWTC	2 cut(s)	178, 211
PflMI	CCANNNNNTGG	2 cut(s)	124, 155
PleI	GAGTC	2 cut(s)	244, 536
PpsI	GAGTC	2 cut(s)	244, 536
PshBI	ATTAAT	1 cut(s)	341
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspPI	GGNCC	3 cut(s)	115, 310, 354
PsuI	RGATCY	2 cut(s)	232, 484
RruI	TCGCGA	1 cut(s)	186
RsaI	GTAC	2 cut(s)	47, 553
RsaNI	GTAC	2 cut(s)	46, 552
RseI	CAYNNNNRTG	2 cut(s)	150, 362
SapI	GCTCTTC	1 cut(s)	201
SaqAI	TTAA	2 cut(s)	341, 527
Sau3AI	GATC	5 cut(s)	232, 257, 468, 477, 484
Sau96I	GGNCC	3 cut(s)	115, 310, 354
SchI	GAGTC	2 cut(s)	244, 536
ScrFI	CCNGG	2 cut(s)	150, 336
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	6 cut(s)	88, 154, 210, 246, 432, 535
SinI	GGWCC	1 cut(s)	354
SmiMI	CAYNNNNRTG	2 cut(s)	150, 362
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	2 cut(s)	5, 137
SsiI	CCGC	3 cut(s)	14, 98, 516
SspMI	CTAG	1 cut(s)	546
StyD4I	CCNGG	2 cut(s)	148, 334
TaaI	ACNGT	2 cut(s)	34, 124
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	4 cut(s)	141, 240, 288, 424
TasI	AATT	2 cut(s)	5, 137
TfiI	GAWTC	2 cut(s)	178, 211
Tru1I	TTAA	2 cut(s)	341, 527
Tru9I	TTAA	2 cut(s)	341, 527
TscAI	CASTG	1 cut(s)	573
TspDTI	ATGAA	2 cut(s)	317, 471
TspGWI	ACGGA	2 cut(s)	96, 367
TspRI	CASTG	1 cut(s)	573
Van91I	CCANNNNNTGG	2 cut(s)	124, 155
VpaK11BI	GGWCC	1 cut(s)	354
VspI	ATTAAT	1 cut(s)	341
XapI	RAATTY	1 cut(s)	137
XmnI	GAANNNNTTC	1 cut(s)	137
XspI	CTAG	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.