Rh3CG103900
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0017795
Physical Location & Seq
Reverse (-)
8239302 .. 8240694
1393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG103900.1

Sequence Viewer

Length: 957 bp
ATGGAATTAGGGGCCGGAGGAGTAGTAAATACCGTGTGGGAGTTGTACGAGAGTAAGGGGAAGATAGGGAGTGGACGCTACGGAGCTGTGCATGAGGCGGTTCAAAAGGCTACGGGCCAAACTGTGGTCTTGAAGGAATTCGAGCACCCAGGTGATGGGCAAGGCTTCACTCCTGAGATTCTTCGCGAAGTGGCTCTTCTCAAAGACCTGAATCAGTCCAGATATGTTGTAGATCTCATCGACGTTGAGGCTCCAAGTTCATCGGATACAAGTATCTATCTCGTTTTCGAGTATCTGGACATGAACTTGGGCCACTACATTAGCCAGTTTGAACCGGGACTAATGCCGAGACGGACCATCAAGATGTTTGTGTTTAGTCTCTGCAAGGGGATGGCTCACATTCACTCACATTTTGTGAAACATCGAGACCTCAAACCTAACAATCTTTTCGTGGATGAAAAGCGAATGATCCTCAAGATCGGAGATCTTGGAGTTAGTCGCTCCATTACTACCCCCGCCACGGCTTTAACACCTGACATGGTCAGCTACCACTATAGGGCTCCTGAAATTTACTTGGGAGGCAGATACGGCCGCCCGGTCGACATGTGGTCTGTAGGATGTGTATTCGCCGAGATGTTGCTGGGCAAACCTCTATTCTATGGACGTGTTAAGGAACAAGCATTGAGCTCCATTTTCAGGACTCTAGGAGTACCAACCGAGGAGCAGTGGCCTGATTGCACTACTCTGCCAAATTGGAATCCCGATTGGAATGCACAAGATTCTGGAGGAGGAGCTGTGGGCTTGGAAGGGATACTTCCTGACATTGATGCATATGGACTTGACCTTTTATATAAAATGCTAACCTATGATCCGGCAAAAAGAATCACGGCTAAACAAGCAATGAAACATCCCTATTTTGACCGAGAACGAGAAACTTTTGAAGACTGGGCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000082 GO:0000278 GO:0000307 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009888 GO:0009889 GO:0009987 GO:0010016 GO:0010033 GO:0010103 GO:0010154 GO:0010374 GO:0010376 GO:0010389 GO:0010440 GO:0010444 GO:0010468 GO:0010556 GO:0010564 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0022414 GO:0023052 GO:0030154 GO:0030332 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032875 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0036211 GO:0040007 GO:0042023 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0060560 GO:0061458 GO:0061695 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097472 GO:0099402 GO:0140096 GO:1901360 GO:1901564 GO:1901576 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902806 GO:1902911 GO:1903047 GO:1990234 GO:2000026 GO:2000037 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

318

Amino Acids

35.82

Weight (kDa)

5.63

Isoelectric Point (pI)

38.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 16 - 306 4.4e-60 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 19 - 242 1.3e-25 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017795)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0460201 RchiOBHm_Chr3g0460211
rosa_laevigata RLG00000025035
rosa_multiflora Rmu_sc0000449.1_g000043 Rmu_sc0003763.1_g000004
rosa_roxburghii Rroxscaffold_6G00419740
rosa_rugosa Rorug03G0041100
rosa_samantha Rh3AG098600 Rh3BG101800 Rh3CG103900 Rh3DG103100
rosa_wichuraiana Rw3G008340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 124, 155
AccI GTMKAC 1 cut(s) 600
AccII CGCG 1 cut(s) 186
AciI CCGC 3 cut(s) 98, 516, 592
AclWI GGATC 2 cut(s) 463, 863
AcoI YGGCCR 1 cut(s) 589
AcsI RAATTY 2 cut(s) 137, 567
AfaI GTAC 2 cut(s) 47, 711
AfiI CCNNNNNNNGG 5 cut(s) 124, 155, 520, 556, 696
AflIII ACRYGT 2 cut(s) 603, 664
AgsI TTSAA 4 cut(s) 104, 133, 332, 941
AhdI GACNNNNNGTC 1 cut(s) 607
AjiI CACGTC 1 cut(s) 665
AjnI CCWGG 1 cut(s) 148
AleI CACNNNNGTG 1 cut(s) 150
AluBI AGCT 4 cut(s) 86, 546, 687, 794
AluI AGCT 4 cut(s) 86, 546, 687, 794
Alw21I GWGCWC 2 cut(s) 147, 689
Alw26I GTCTC 3 cut(s) 343, 383, 420
AlwI GGATC 2 cut(s) 463, 863
AoxI GGCC 5 cut(s) 12, 115, 310, 589, 728
ApoI RAATTY 2 cut(s) 137, 567
Asp700I GAANNNNTTC 1 cut(s) 137
AspS9I GGNCC 4 cut(s) 12, 115, 310, 354
AsuC2I CCSGG 2 cut(s) 336, 596
AsuHPI GGTGA 1 cut(s) 164
AvaII GGWCC 1 cut(s) 354
BanII GRGCYC 2 cut(s) 562, 689
BbsI GAAGAC 1 cut(s) 948
Bbv12I GWGCWC 2 cut(s) 147, 689
BccI CCATC 3 cut(s) 149, 365, 385
BceAI ACGGC 3 cut(s) 537, 604, 903
BcgI CGANNNNNNTGC 2 cut(s) 752, 786
BciT130I CCWGG 1 cut(s) 150
BciVI GTATCC 2 cut(s) 259, 804
BcnI CCSGG 2 cut(s) 336, 596
BcoDI GTCTC 3 cut(s) 343, 383, 420
BfaI CTAG 1 cut(s) 704
BfmI CTRYAG 2 cut(s) 553, 612
BfuI GTATCC 2 cut(s) 259, 804
BglII AGATCT 2 cut(s) 232, 484
BisI GCNGC 1 cut(s) 592
BlsI GCNGC 1 cut(s) 593
Bme1390I CCNGG 3 cut(s) 150, 336, 596
Bme18I GGWCC 1 cut(s) 354
BmeRI GACNNNNNGTC 1 cut(s) 607
BmgBI CACGTC 1 cut(s) 665
BmgT120I GGNCC 4 cut(s) 12, 115, 310, 354
BmiI GGNNCC 3 cut(s) 13, 252, 561
BmrFI CCNGG 3 cut(s) 150, 336, 596
BmrI ACTGGG 1 cut(s) 955
BmsI GCATC 1 cut(s) 817
BmuI ACTGGG 1 cut(s) 955
BpiI GAAGAC 1 cut(s) 948
BpmI CTGGAG 1 cut(s) 804
BpuEI CTTGAG 1 cut(s) 458
BpuMI CCSGG 2 cut(s) 336, 596
BsaI GGTCTC 1 cut(s) 420
BsaJI CCNNGG 3 cut(s) 148, 519, 717
BsaXI ACNNNNNCTCC 4 cut(s) 9, 39, 780, 810
Bsc4I CCNNNNNNNGG 5 cut(s) 124, 155, 520, 556, 696
Bse1I ACTGG 2 cut(s) 325, 950
Bse3DI GCAATG 1 cut(s) 906
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 3 cut(s) 148, 519, 717
BseGI GGATG 4 cut(s) 396, 460, 623, 907
BseLI CCNNNNNNNGG 5 cut(s) 124, 155, 520, 556, 696
BseMI GCAATG 1 cut(s) 906
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 2 cut(s) 325, 950
BseRI GAGGAG 4 cut(s) 33, 734, 801, 804
BseX3I CGGCCG 1 cut(s) 589
BseYI CCCAGC 1 cut(s) 640
Bsh1236I CGCG 1 cut(s) 186
Bsh1285I CGRYCG 2 cut(s) 592, 600
BshFI GGCC 5 cut(s) 14, 117, 312, 591, 730
BsiEI CGRYCG 2 cut(s) 592, 600
BsiHKAI GWGCWC 2 cut(s) 147, 689
BsiSI CCGG 4 cut(s) 15, 335, 596, 872
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 5 cut(s) 124, 155, 520, 556, 696
BsmAI GTCTC 3 cut(s) 343, 383, 420
BsmBI CGTCTC 1 cut(s) 343
BsmFI GGGAC 1 cut(s) 351
BsmI GAATGC 1 cut(s) 775
BsnI GGCC 5 cut(s) 14, 117, 312, 591, 730
Bso31I GGTCTC 1 cut(s) 420
Bsp1286I GDGCHC 3 cut(s) 147, 562, 689
Bsp143I GATC 5 cut(s) 232, 468, 477, 484, 868
Bsp68I TCGCGA 1 cut(s) 186
BspACI CCGC 3 cut(s) 98, 516, 592
BspANI GGCC 5 cut(s) 14, 117, 312, 591, 730
BspCNI CTCAG 1 cut(s) 166
BspFNI CGCG 1 cut(s) 186
BspLI GGNNCC 3 cut(s) 13, 252, 561
BspPI GGATC 2 cut(s) 463, 863
BspQI GCTCTTC 1 cut(s) 201
BspTNI GGTCTC 1 cut(s) 420
BsrDI GCAATG 1 cut(s) 906
BsrI ACTGG 2 cut(s) 325, 950
BssECI CCNNGG 3 cut(s) 148, 519, 717
BssMI GATC 5 cut(s) 232, 468, 477, 484, 868
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 2 cut(s) 34, 124
Bst6I CTCTTC 1 cut(s) 201
BstDEI CTNAG 1 cut(s) 174
BstDSI CCRYGG 1 cut(s) 519
BstF5I GGATG 4 cut(s) 396, 460, 623, 907
BstFNI CGCG 1 cut(s) 186
BstKTI GATC 5 cut(s) 235, 471, 480, 487, 871
BstMAI GTCTC 3 cut(s) 343, 383, 420
BstMBI GATC 5 cut(s) 232, 468, 477, 484, 868
BstMCI CGRYCG 2 cut(s) 592, 600
BstMWI GCNNNNNNNGC 2 cut(s) 588, 896
BstNI CCWGG 1 cut(s) 150
BstNSI RCATGY 1 cut(s) 607
BstSCI CCNGG 3 cut(s) 148, 334, 594
BstSFI CTRYAG 2 cut(s) 553, 612
BstUI CGCG 1 cut(s) 186
BstV2I GAAGAC 1 cut(s) 948
BstX2I RGATCY 2 cut(s) 232, 484
BstYI RGATCY 2 cut(s) 232, 484
BstZI CGGCCG 1 cut(s) 589
BsuI GTATCC 2 cut(s) 259, 804
BsuRI GGCC 5 cut(s) 14, 117, 312, 591, 730
BtgI CCRYGG 1 cut(s) 519
BtrI CACGTC 1 cut(s) 665
BtsCI GGATG 4 cut(s) 396, 460, 623, 907
BtsI GCAGTG 1 cut(s) 731
BtsIMutI CAGTG 1 cut(s) 731
BtuMI TCGCGA 1 cut(s) 186
Cfr13I GGNCC 4 cut(s) 12, 115, 310, 354
CseI GACGC 1 cut(s) 84
Csp6I GTAC 2 cut(s) 46, 710
CviAII CATG 4 cut(s) 92, 301, 538, 604
CviQI GTAC 2 cut(s) 46, 710
DdeI CTNAG 1 cut(s) 174
DpnI GATC 5 cut(s) 234, 470, 479, 486, 870
DpnII GATC 5 cut(s) 232, 468, 477, 484, 868
DriI GACNNNNNGTC 1 cut(s) 607
EaeI YGGCCR 1 cut(s) 589
EagI CGGCCG 1 cut(s) 589
Eam1104I CTCTTC 1 cut(s) 201
Eam1105I GACNNNNNGTC 1 cut(s) 607
EarI CTCTTC 1 cut(s) 201
Ecl136II GAGCTC 1 cut(s) 687
EclXI CGGCCG 1 cut(s) 589
Eco24I GRGCYC 2 cut(s) 562, 689
Eco31I GGTCTC 1 cut(s) 420
Eco47I GGWCC 1 cut(s) 354
Eco52I CGGCCG 1 cut(s) 589
Eco53kI GAGCTC 1 cut(s) 687
EcoICRI GAGCTC 1 cut(s) 687
EcoRI GAATTC 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 148
EcoT22I ATGCAT 1 cut(s) 832
EcoT38I GRGCYC 2 cut(s) 562, 689
Esp3I CGTCTC 1 cut(s) 343
FaeI CATG 4 cut(s) 95, 304, 541, 607
FalI AAGNNNNNCTT 4 cut(s) 180, 212, 798, 830
FaqI GGGAC 1 cut(s) 351
FatI CATG 4 cut(s) 91, 300, 537, 603
FauI CCCGC 1 cut(s) 523
FauNDI CATATG 1 cut(s) 832
FblI GTMKAC 1 cut(s) 600
Fnu4HI GCNGC 1 cut(s) 592
FokI GGATG 4 cut(s) 403, 467, 630, 894
FriOI GRGCYC 2 cut(s) 562, 689
Fsp4HI GCNGC 1 cut(s) 592
FspBI CTAG 1 cut(s) 704
GluI GCNGC 1 cut(s) 592
GsaI CCCAGC 1 cut(s) 644
GsuI CTGGAG 1 cut(s) 804
HaeIII GGCC 5 cut(s) 14, 117, 312, 591, 730
HapII CCGG 4 cut(s) 15, 335, 596, 872
HgaI GACGC 1 cut(s) 84
Hin1II CATG 4 cut(s) 95, 304, 541, 607
HincII GTYRAC 1 cut(s) 601
HindII GTYRAC 1 cut(s) 601
HinfI GANTC 6 cut(s) 178, 211, 700, 757, 779, 882
HpaII CCGG 4 cut(s) 15, 335, 596, 872
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 2 cut(s) 74, 601
Hpy188I TCNGA 3 cut(s) 265, 482, 956
Hpy8I GTNNAC 2 cut(s) 74, 601
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 2 cut(s) 127, 800
HpyCH4III ACNGT 2 cut(s) 34, 124
HpyCH4IV ACGT 2 cut(s) 243, 664
HpyCH4V TGCA 5 cut(s) 91, 384, 738, 773, 830
HpyF10VI GCNNNNNNNGC 2 cut(s) 588, 896
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 2 cut(s) 243, 664
Hsp92II CATG 4 cut(s) 95, 304, 541, 607
Kzo9I GATC 5 cut(s) 232, 468, 477, 484, 868
LguI GCTCTTC 1 cut(s) 201
LmnI GCTCC 7 cut(s) 83, 256, 506, 565, 692, 721, 791
LweI GCATC 1 cut(s) 817
MaeI CTAG 1 cut(s) 704
MaeII ACGT 2 cut(s) 243, 664
MalI GATC 5 cut(s) 234, 470, 479, 486, 870
MboI GATC 5 cut(s) 232, 468, 477, 484, 868
MboII GAAGA 4 cut(s) 73, 173, 188, 953
MflI RGATCY 2 cut(s) 232, 484
MhlI GDGCHC 3 cut(s) 147, 562, 689
MluCI AATT 4 cut(s) 5, 137, 567, 751
MlyI GAGTC 1 cut(s) 694
Mph1103I ATGCAT 1 cut(s) 832
MroXI GAANNNNTTC 1 cut(s) 137
MseI TTAA 2 cut(s) 527, 669
MslI CAYNNNNRTG 2 cut(s) 150, 362
MspI CCGG 4 cut(s) 15, 335, 596, 872
MspR9I CCNGG 3 cut(s) 150, 336, 596
Mva1269I GAATGC 1 cut(s) 775
MvaI CCWGG 1 cut(s) 150
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 2 cut(s) 588, 896
NciI CCSGG 2 cut(s) 336, 596
NdeI CATATG 1 cut(s) 832
NdeII GATC 5 cut(s) 232, 468, 477, 484, 868
NlaIII CATG 4 cut(s) 95, 304, 541, 607
NlaIV GGNNCC 3 cut(s) 13, 252, 561
NmeAIII GCCGAG 2 cut(s) 372, 655
NruI TCGCGA 1 cut(s) 186
NsiI ATGCAT 1 cut(s) 832
NspI RCATGY 1 cut(s) 607
OliI CACNNNNGTG 1 cut(s) 150
PciI ACATGT 1 cut(s) 603
PciSI GCTCTTC 1 cut(s) 201
PctI GAATGC 1 cut(s) 775
PdmI GAANNNNTTC 1 cut(s) 137
PfeI GAWTC 5 cut(s) 178, 211, 757, 779, 882
PflFI GACNNNGTC 1 cut(s) 539
PflMI CCANNNNNTGG 2 cut(s) 124, 155
PkrI GCNGC 1 cut(s) 593
PleI GAGTC 1 cut(s) 694
PpsI GAGTC 1 cut(s) 694
PscI ACATGT 1 cut(s) 603
Psp124BI GAGCTC 1 cut(s) 689
Psp6I CCWGG 1 cut(s) 148
PspFI CCCAGC 1 cut(s) 640
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 3 cut(s) 13, 252, 561
PspPI GGNCC 4 cut(s) 12, 115, 310, 354
PsuI RGATCY 2 cut(s) 232, 484
PsyI GACNNNGTC 1 cut(s) 539
RruI TCGCGA 1 cut(s) 186
RsaI GTAC 2 cut(s) 47, 711
RsaNI GTAC 2 cut(s) 46, 710
RseI CAYNNNNRTG 2 cut(s) 150, 362
SacI GAGCTC 1 cut(s) 689
SalI GTCGAC 1 cut(s) 599
SapI GCTCTTC 1 cut(s) 201
SaqAI TTAA 2 cut(s) 527, 669
SatI GCNGC 1 cut(s) 592
Sau3AI GATC 5 cut(s) 232, 468, 477, 484, 868
Sau96I GGNCC 4 cut(s) 12, 115, 310, 354
SchI GAGTC 1 cut(s) 694
ScrFI CCNGG 3 cut(s) 150, 336, 596
SduI GDGCHC 3 cut(s) 147, 562, 689
SfaNI GCATC 1 cut(s) 817
SfcI CTRYAG 2 cut(s) 553, 612
SinI GGWCC 1 cut(s) 354
SmiMI CAYNNNNRTG 2 cut(s) 150, 362
SmlI CTYRAG 1 cut(s) 473
SmoI CTYRAG 1 cut(s) 473
Sse9I AATT 4 cut(s) 5, 137, 567, 751
SsiI CCGC 3 cut(s) 98, 516, 592
SspMI CTAG 1 cut(s) 704
SstI GAGCTC 1 cut(s) 689
StyD4I CCNGG 3 cut(s) 148, 334, 594
TaaI ACNGT 2 cut(s) 34, 124
TaiI ACGT 2 cut(s) 246, 667
TaqI TCGA 5 cut(s) 141, 240, 288, 424, 600
TaqII GACCGA 1 cut(s) 936
TasI AATT 4 cut(s) 5, 137, 567, 751
TauI GCSGC 1 cut(s) 594
TfiI GAWTC 5 cut(s) 178, 211, 757, 779, 882
Tru1I TTAA 2 cut(s) 527, 669
Tru9I TTAA 2 cut(s) 527, 669
TscAI CASTG 1 cut(s) 731
TspDTI ATGAA 4 cut(s) 249, 317, 471, 917
TspGWI ACGGA 2 cut(s) 96, 367
TspRI CASTG 1 cut(s) 731
Tth111I GACNNNGTC 1 cut(s) 539
Van91I CCANNNNNTGG 2 cut(s) 124, 155
VpaK11BI GGWCC 1 cut(s) 354
XapI RAATTY 2 cut(s) 137, 567
XceI RCATGY 1 cut(s) 607
XmiI GTMKAC 1 cut(s) 600
XmnI GAANNNNTTC 1 cut(s) 137
XspI CTAG 1 cut(s) 704
Zsp2I ATGCAT 1 cut(s) 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.