Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0017795

Physical Location & Seq

Genomic Coordinates Reverse (-)

8118824 .. 8120751

Gene Structure 1928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG101800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGAACTTGGGCCACTACATTAGCAAGTTTGAACCGGGATTAATGCCGAGACGGACCATCAAGATGTTTGTGTTTAGTCTCTGCAAGGGGATGGCTCACATTCACTCACATTTTGTGATACATCGAGACCTCAAATCTGACAATCTTTTCGTGGATGAAAAGCGAATGATCCTCAAGATCGGAGATCTTGGAGTTAGTCGCTCCATTACTACCCCCGTCACGGCTTTAACACCTGACGTGGTCAGCTACCACTATAGGGCTCCTGAAATTTACTTGGGAGGCAGATACGGCCGCCCGGTCGACATGTGGTCTGTAGGATGTGTATTCGCCGAGATGTTGCTGGGCAAACCTCTATTCTATGGACGTGTTAAAGAACAAGCATTGAGCTCCATTTTCAGGACTCTAGGAGTACCAACCGAGGAGCAGTGGCCTGATTGCACTACTCTGCCAAATTGGAATGCACAAGATTCTGGAGGAGGAGCTGTGGGCTTGGAAGGGATAATTCCTGACATTGATGCATATGGACTTGACCTTTTATATAAAATGCTAACCTATGATCCGGCAAAAAGAATCACGGCTAAACAAGCAATGAAACATCCCTATTTTGACCGAGAACGAGAAACTTTTGAAGACTGGGCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000086 GO:0000278 GO:0000307 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009719 GO:0009725 GO:0009755 GO:0009934 GO:0009987 GO:0010033 GO:0010389 GO:0010468 GO:0010564 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0022603 GO:0023052 GO:0030332 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036211 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0044843 GO:0046777 GO:0048509 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071310 GO:0071495 GO:0071704 GO:0071840 GO:0097472 GO:0140096 GO:1901564 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902911 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

214

Amino Acids

24.37

Weight (kDa)

7.05

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	11 - 202	1.2e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	13 - 143	4e-17	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017795)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0460201 RchiOBHm_Chr3g0460211
rosa_laevigata	RLG00000025035
rosa_multiflora	Rmu_sc0000449.1_g000043 Rmu_sc0003763.1_g000004
rosa_roxburghii	Rroxscaffold_6G00419740
rosa_rugosa	Rorug03G0041100
rosa_samantha	Rh3AG098600 Rh3BG101800 Rh3CG103900 Rh3DG103100
rosa_wichuraiana	Rw3G008340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	300
AciI	CCGC	1 cut(s)	292
AclWI	GGATC	2 cut(s)	163, 551
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	267
AfaI	GTAC	1 cut(s)	411
AfiI	CCNNNNNNNGG	3 cut(s)	220, 256, 396
AflIII	ACRYGT	2 cut(s)	303, 364
AgsI	TTSAA	2 cut(s)	32, 629
AhdI	GACNNNNNGTC	1 cut(s)	307
AjiI	CACGTC	2 cut(s)	238, 365
AluBI	AGCT	3 cut(s)	246, 387, 482
AluI	AGCT	3 cut(s)	246, 387, 482
Alw21I	GWGCWC	1 cut(s)	389
Alw26I	GTCTC	3 cut(s)	43, 83, 120
AlwI	GGATC	2 cut(s)	163, 551
AoxI	GGCC	3 cut(s)	10, 289, 428
ApoI	RAATTY	1 cut(s)	267
ArsI	GACNNNNNNTTYG	2 cut(s)	131, 163
AseI	ATTAAT	1 cut(s)	41
AspS9I	GGNCC	2 cut(s)	10, 54
AsuC2I	CCSGG	2 cut(s)	36, 296
AvaII	GGWCC	1 cut(s)	54
BanII	GRGCYC	2 cut(s)	262, 389
BbsI	GAAGAC	1 cut(s)	636
Bbv12I	GWGCWC	1 cut(s)	389
BccI	CCATC	2 cut(s)	65, 85
BceAI	ACGGC	3 cut(s)	237, 304, 591
BcnI	CCSGG	2 cut(s)	36, 296
BcoDI	GTCTC	3 cut(s)	43, 83, 120
BfaI	CTAG	1 cut(s)	404
BfmI	CTRYAG	2 cut(s)	253, 312
BglII	AGATCT	1 cut(s)	184
BisI	GCNGC	1 cut(s)	292
BlsI	GCNGC	1 cut(s)	293
Bme1390I	CCNGG	2 cut(s)	36, 296
Bme18I	GGWCC	1 cut(s)	54
BmeRI	GACNNNNNGTC	1 cut(s)	307
BmgBI	CACGTC	2 cut(s)	238, 365
BmgT120I	GGNCC	2 cut(s)	10, 54
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	2 cut(s)	36, 296
BmrI	ACTGGG	1 cut(s)	643
BmsI	GCATC	1 cut(s)	505
BmuI	ACTGGG	1 cut(s)	643
BpiI	GAAGAC	1 cut(s)	636
BpmI	CTGGAG	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	158
BpuMI	CCSGG	2 cut(s)	36, 296
BsaI	GGTCTC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	417
BsaXI	ACNNNNNCTCC	2 cut(s)	468, 498
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 256, 396
Bse1I	ACTGG	1 cut(s)	638
Bse3DI	GCAATG	1 cut(s)	594
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	4 cut(s)	96, 160, 323, 595
BseLI	CCNNNNNNNGG	3 cut(s)	220, 256, 396
BseMI	GCAATG	1 cut(s)	594
BseNI	ACTGG	1 cut(s)	638
BseRI	GAGGAG	3 cut(s)	434, 489, 492
BseX3I	CGGCCG	1 cut(s)	289
BseYI	CCCAGC	1 cut(s)	340
Bsh1285I	CGRYCG	2 cut(s)	292, 300
BshFI	GGCC	3 cut(s)	12, 291, 430
BsiEI	CGRYCG	2 cut(s)	292, 300
BsiHKAI	GWGCWC	1 cut(s)	389
BsiSI	CCGG	3 cut(s)	35, 296, 560
BslI	CCNNNNNNNGG	3 cut(s)	220, 256, 396
BsmAI	GTCTC	3 cut(s)	43, 83, 120
BsmBI	CGTCTC	1 cut(s)	43
BsmI	GAATGC	1 cut(s)	463
BsnI	GGCC	3 cut(s)	12, 291, 430
Bso31I	GGTCTC	1 cut(s)	120
Bsp1286I	GDGCHC	2 cut(s)	262, 389
Bsp143I	GATC	4 cut(s)	168, 177, 184, 556
BspACI	CCGC	1 cut(s)	292
BspANI	GGCC	3 cut(s)	12, 291, 430
BspLI	GGNNCC	1 cut(s)	261
BspPI	GGATC	2 cut(s)	163, 551
BspTNI	GGTCTC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	594
BsrI	ACTGG	1 cut(s)	638
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	4 cut(s)	168, 177, 184, 556
BstF5I	GGATG	4 cut(s)	96, 160, 323, 595
BstKTI	GATC	4 cut(s)	171, 180, 187, 559
BstMAI	GTCTC	3 cut(s)	43, 83, 120
BstMBI	GATC	4 cut(s)	168, 177, 184, 556
BstMCI	CGRYCG	2 cut(s)	292, 300
BstMWI	GCNNNNNNNGC	2 cut(s)	288, 584
BstNSI	RCATGY	1 cut(s)	307
BstSCI	CCNGG	2 cut(s)	34, 294
BstSFI	CTRYAG	2 cut(s)	253, 312
BstV2I	GAAGAC	1 cut(s)	636
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BstZI	CGGCCG	1 cut(s)	289
BsuRI	GGCC	3 cut(s)	12, 291, 430
BtrI	CACGTC	2 cut(s)	238, 365
BtsCI	GGATG	4 cut(s)	96, 160, 323, 595
BtsI	GCAGTG	1 cut(s)	431
BtsIMutI	CAGTG	1 cut(s)	431
Cfr13I	GGNCC	2 cut(s)	10, 54
Csp6I	GTAC	1 cut(s)	410
CviAII	CATG	1 cut(s)	304
CviQI	GTAC	1 cut(s)	410
DpnI	GATC	4 cut(s)	170, 179, 186, 558
DpnII	GATC	4 cut(s)	168, 177, 184, 556
DriI	GACNNNNNGTC	1 cut(s)	307
EaeI	YGGCCR	1 cut(s)	289
EagI	CGGCCG	1 cut(s)	289
Eam1105I	GACNNNNNGTC	1 cut(s)	307
Ecl136II	GAGCTC	1 cut(s)	387
EclXI	CGGCCG	1 cut(s)	289
Eco24I	GRGCYC	2 cut(s)	262, 389
Eco31I	GGTCTC	1 cut(s)	120
Eco47I	GGWCC	1 cut(s)	54
Eco52I	CGGCCG	1 cut(s)	289
Eco53kI	GAGCTC	1 cut(s)	387
EcoICRI	GAGCTC	1 cut(s)	387
EcoT22I	ATGCAT	1 cut(s)	520
EcoT38I	GRGCYC	2 cut(s)	262, 389
Esp3I	CGTCTC	1 cut(s)	43
FaeI	CATG	1 cut(s)	307
FaiI	YATR	8 cut(s)	255, 305, 360, 520, 522, 538, 540, 555
FatI	CATG	1 cut(s)	303
FauNDI	CATATG	1 cut(s)	520
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	292
FokI	GGATG	4 cut(s)	103, 167, 330, 582
FriOI	GRGCYC	2 cut(s)	262, 389
Fsp4HI	GCNGC	1 cut(s)	292
FspBI	CTAG	1 cut(s)	404
GluI	GCNGC	1 cut(s)	292
GsaI	CCCAGC	1 cut(s)	344
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	3 cut(s)	12, 291, 430
HapII	CCGG	3 cut(s)	35, 296, 560
Hin1II	CATG	1 cut(s)	307
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	3 cut(s)	400, 467, 570
HpaII	CCGG	3 cut(s)	35, 296, 560
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	3 cut(s)	139, 182, 644
Hpy188III	TCNNGA	7 cut(s)	61, 125, 175, 263, 397, 471, 506
Hpy8I	GTNNAC	1 cut(s)	301
HpyAV	CCTTC	1 cut(s)	488
HpyCH4IV	ACGT	2 cut(s)	237, 364
HpyCH4V	TGCA	4 cut(s)	84, 438, 461, 518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	288, 584
HpySE526I	ACGT	2 cut(s)	237, 364
Hsp92II	CATG	1 cut(s)	307
Kzo9I	GATC	4 cut(s)	168, 177, 184, 556
LmnI	GCTCC	5 cut(s)	206, 265, 392, 421, 479
LweI	GCATC	1 cut(s)	505
MaeI	CTAG	1 cut(s)	404
MaeII	ACGT	2 cut(s)	237, 364
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	4 cut(s)	170, 179, 186, 558
MboI	GATC	4 cut(s)	168, 177, 184, 556
MboII	GAAGA	1 cut(s)	641
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	2 cut(s)	262, 389
MluCI	AATT	3 cut(s)	267, 451, 501
MlyI	GAGTC	1 cut(s)	394
MnlI	CCTC	7 cut(s)	140, 182, 272, 360, 412, 467, 470
Mph1103I	ATGCAT	1 cut(s)	520
MseI	TTAA	3 cut(s)	41, 227, 369
MslI	CAYNNNNRTG	1 cut(s)	62
MspI	CCGG	3 cut(s)	35, 296, 560
MspR9I	CCNGG	2 cut(s)	36, 296
Mva1269I	GAATGC	1 cut(s)	463
MwoI	GCNNNNNNNGC	2 cut(s)	288, 584
NciI	CCSGG	2 cut(s)	36, 296
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	4 cut(s)	168, 177, 184, 556
NlaIII	CATG	1 cut(s)	307
NlaIV	GGNNCC	1 cut(s)	261
NmeAIII	GCCGAG	2 cut(s)	72, 355
NmuCI	GTSAC	1 cut(s)	217
NsiI	ATGCAT	1 cut(s)	520
NspI	RCATGY	1 cut(s)	307
PciI	ACATGT	1 cut(s)	303
PctI	GAATGC	1 cut(s)	463
PfeI	GAWTC	2 cut(s)	467, 570
PflFI	GACNNNGTC	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	293
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
PscI	ACATGT	1 cut(s)	303
PshBI	ATTAAT	1 cut(s)	41
Psp124BI	GAGCTC	1 cut(s)	389
PspFI	CCCAGC	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	2 cut(s)	10, 54
PsuI	RGATCY	1 cut(s)	184
PsyI	GACNNNGTC	1 cut(s)	239
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
RseI	CAYNNNNRTG	1 cut(s)	62
SacI	GAGCTC	1 cut(s)	389
SalI	GTCGAC	1 cut(s)	299
SaqAI	TTAA	3 cut(s)	41, 227, 369
SatI	GCNGC	1 cut(s)	292
Sau3AI	GATC	4 cut(s)	168, 177, 184, 556
Sau96I	GGNCC	2 cut(s)	10, 54
SchI	GAGTC	1 cut(s)	394
ScrFI	CCNGG	2 cut(s)	36, 296
SduI	GDGCHC	2 cut(s)	262, 389
SfaNI	GCATC	1 cut(s)	505
SfcI	CTRYAG	2 cut(s)	253, 312
SinI	GGWCC	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	3 cut(s)	267, 451, 501
SsiI	CCGC	1 cut(s)	292
SspMI	CTAG	1 cut(s)	404
SstI	GAGCTC	1 cut(s)	389
StyD4I	CCNGG	2 cut(s)	34, 294
TaiI	ACGT	2 cut(s)	240, 367
TaqI	TCGA	2 cut(s)	124, 300
TaqII	GACCGA	1 cut(s)	624
TasI	AATT	3 cut(s)	267, 451, 501
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	2 cut(s)	467, 570
Tru1I	TTAA	3 cut(s)	41, 227, 369
Tru9I	TTAA	3 cut(s)	41, 227, 369
TscAI	CASTG	1 cut(s)	431
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	3 cut(s)	17, 171, 605
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	1 cut(s)	431
Tth111I	GACNNNGTC	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	54
VspI	ATTAAT	1 cut(s)	41
XapI	RAATTY	1 cut(s)	267
XceI	RCATGY	1 cut(s)	307
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	1 cut(s)	404
Zsp2I	ATGCAT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.