Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0017795

Physical Location & Seq

Genomic Coordinates Reverse (-)

7721110 .. 7723081

Gene Structure 1972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G008340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGAATTAGGAGCGGGAGGAGTAGTAAATACCGTGTGGGAGTTGTACGAGAGTAAGGGGAAGATAGGGAGTGGACGCTACGGAGCTGTGCATGAGGCGGTTCAAAAGGCTACGGGCCAAACTGTGGCCTTGAAGGAATTCGAGCACCCAGGTGATGGGCAAGGCTTCACTCCTGAGATTCTTCGCGAAGTGGCTCTTCTCAAAGACCTGAATCAGTCCAGATATGTTGTAGATCTCATCGACGTTGAGACTCCAAGATCATCGGATACAAGTATCTATCTCGTTTTCGAGTATCTGGACATGAACTTGGGCCACTACATTAGCAAGTTTGAACCGGGATTAATGCCGAGACGGACCATCAAGATGTTTGTGTTTAGTCTCTGCAAGGGGATGGCTCACATTCACTCACATTTTGTGATACATCGAGACCTCAAATCTGACAATCTTTTCGTGGATGAAAAGCGAATGATCCTCAAGATCGGAGATCTTGGAGTTAGTCGCTCCATTACTACCCCCGCCACGGCTTTAACACCTGACATGGTCAGCTACCACTATAGGGCTCCTGAAATTTACTTGGGAGGCAGATACGGCCGCCCGGTCGACATGTGGTCTGTAGGATGTGTATTCGCCGAGATGTTGCTGGGCAAACCTCTATTCTATGGACGTGTTAAGGAACAAGCATTGAGCTCCATTTTCAGGACTCTAGGAGTACCAACCGAGGAGCAGTGGCCTGATTGCACTAGTCTGCCAAATTGGAATGCACAAGATTCTGGAGGAGGAGCTGTGGGCTTGGAAGGGATAATTCCTGACATTGATGCATATGGACTTGACCTTTTATATAAAATGCTAACCTATGATCCGGCAAAAAGAATCACGGCTAAACAAGCAATGAAACATCCCTATTTTGACCGAGAACGAGAAACTTTTGAAGACTGGGCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000086 GO:0000278 GO:0000307 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0009719 GO:0009725 GO:0009755 GO:0009934 GO:0009987 GO:0010033 GO:0010389 GO:0010468 GO:0010564 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0022603 GO:0023052 GO:0030332 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036211 GO:0042127 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0044843 GO:0046777 GO:0048509 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071310 GO:0071495 GO:0071704 GO:0071840 GO:0097472 GO:0140096 GO:1901564 GO:1901987 GO:1901990 GO:1902494 GO:1902554 GO:1902749 GO:1902911 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

314

Amino Acids

35.35

Weight (kDa)

5.75

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	16 - 302	2.5e-61	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	19 - 242	1.6e-28	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017795)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0460201 RchiOBHm_Chr3g0460211
rosa_laevigata	RLG00000025035
rosa_multiflora	Rmu_sc0000449.1_g000043 Rmu_sc0003763.1_g000004
rosa_roxburghii	Rroxscaffold_6G00419740
rosa_rugosa	Rorug03G0041100
rosa_samantha	Rh3AG098600 Rh3BG101800 Rh3CG103900 Rh3DG103100
rosa_wichuraiana	Rw3G008340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	124, 155
AccBSI	CCGCTC	1 cut(s)	14
AccI	GTMKAC	1 cut(s)	600
AccII	CGCG	1 cut(s)	186
AciI	CCGC	4 cut(s)	14, 98, 516, 592
AclWI	GGATC	2 cut(s)	463, 851
AcoI	YGGCCR	1 cut(s)	589
AcsI	RAATTY	2 cut(s)	137, 567
AfaI	GTAC	2 cut(s)	47, 711
AfiI	CCNNNNNNNGG	5 cut(s)	124, 155, 520, 556, 696
AflIII	ACRYGT	2 cut(s)	603, 664
AgsI	TTSAA	4 cut(s)	104, 133, 332, 929
AhdI	GACNNNNNGTC	1 cut(s)	607
AhlI	ACTAGT	1 cut(s)	740
AjiI	CACGTC	1 cut(s)	665
AjnI	CCWGG	1 cut(s)	148
AleI	CACNNNNGTG	1 cut(s)	150
AluBI	AGCT	4 cut(s)	86, 546, 687, 782
AluI	AGCT	4 cut(s)	86, 546, 687, 782
Alw21I	GWGCWC	2 cut(s)	147, 689
Alw26I	GTCTC	4 cut(s)	242, 343, 383, 420
AlwI	GGATC	2 cut(s)	463, 851
AoxI	GGCC	5 cut(s)	115, 126, 310, 589, 728
ApoI	RAATTY	2 cut(s)	137, 567
ArsI	GACNNNNNNTTYG	2 cut(s)	431, 463
AseI	ATTAAT	1 cut(s)	341
Asp700I	GAANNNNTTC	1 cut(s)	137
AspS9I	GGNCC	3 cut(s)	115, 310, 354
AsuC2I	CCSGG	2 cut(s)	336, 596
AsuHPI	GGTGA	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	354
BanII	GRGCYC	2 cut(s)	562, 689
BbsI	GAAGAC	1 cut(s)	936
Bbv12I	GWGCWC	2 cut(s)	147, 689
BccI	CCATC	3 cut(s)	149, 365, 385
BceAI	ACGGC	3 cut(s)	537, 604, 891
BciT130I	CCWGG	1 cut(s)	150
BciVI	GTATCC	1 cut(s)	259
BcnI	CCSGG	2 cut(s)	336, 596
BcoDI	GTCTC	4 cut(s)	242, 343, 383, 420
BcuI	ACTAGT	1 cut(s)	740
BfaI	CTAG	2 cut(s)	704, 741
BfmI	CTRYAG	2 cut(s)	553, 612
BfuI	GTATCC	1 cut(s)	259
BglII	AGATCT	2 cut(s)	232, 484
BisI	GCNGC	1 cut(s)	592
BlsI	GCNGC	1 cut(s)	593
Bme1390I	CCNGG	3 cut(s)	150, 336, 596
Bme18I	GGWCC	1 cut(s)	354
BmeRI	GACNNNNNGTC	1 cut(s)	607
BmgBI	CACGTC	1 cut(s)	665
BmgT120I	GGNCC	3 cut(s)	115, 310, 354
BmiI	GGNNCC	1 cut(s)	561
BmrFI	CCNGG	3 cut(s)	150, 336, 596
BmrI	ACTGGG	1 cut(s)	943
BmsI	GCATC	1 cut(s)	805
BmuI	ACTGGG	1 cut(s)	943
BpiI	GAAGAC	1 cut(s)	936
BpmI	CTGGAG	1 cut(s)	792
BpuEI	CTTGAG	1 cut(s)	458
BpuMI	CCSGG	2 cut(s)	336, 596
BsaI	GGTCTC	1 cut(s)	420
BsaJI	CCNNGG	3 cut(s)	148, 519, 717
BsaXI	ACNNNNNCTCC	4 cut(s)	9, 39, 768, 798
Bsc4I	CCNNNNNNNGG	5 cut(s)	124, 155, 520, 556, 696
Bse1I	ACTGG	1 cut(s)	938
Bse3DI	GCAATG	1 cut(s)	894
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	3 cut(s)	148, 519, 717
BseGI	GGATG	4 cut(s)	396, 460, 623, 895
BseLI	CCNNNNNNNGG	5 cut(s)	124, 155, 520, 556, 696
BseMI	GCAATG	1 cut(s)	894
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	938
BseRI	GAGGAG	4 cut(s)	33, 734, 789, 792
BseX3I	CGGCCG	1 cut(s)	589
BseYI	CCCAGC	1 cut(s)	640
Bsh1236I	CGCG	1 cut(s)	186
Bsh1285I	CGRYCG	2 cut(s)	592, 600
BshFI	GGCC	5 cut(s)	117, 128, 312, 591, 730
BsiEI	CGRYCG	2 cut(s)	592, 600
BsiHKAI	GWGCWC	2 cut(s)	147, 689
BsiSI	CCGG	3 cut(s)	335, 596, 860
BslI	CCNNNNNNNGG	5 cut(s)	124, 155, 520, 556, 696
BsmAI	GTCTC	4 cut(s)	242, 343, 383, 420
BsmBI	CGTCTC	1 cut(s)	343
BsmI	GAATGC	1 cut(s)	763
BsnI	GGCC	5 cut(s)	117, 128, 312, 591, 730
Bso31I	GGTCTC	1 cut(s)	420
Bsp1286I	GDGCHC	3 cut(s)	147, 562, 689
Bsp143I	GATC	6 cut(s)	232, 257, 468, 477, 484, 856
Bsp68I	TCGCGA	1 cut(s)	186
BspACI	CCGC	4 cut(s)	14, 98, 516, 592
BspANI	GGCC	5 cut(s)	117, 128, 312, 591, 730
BspCNI	CTCAG	1 cut(s)	166
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	561
BspPI	GGATC	2 cut(s)	463, 851
BspQI	GCTCTTC	1 cut(s)	201
BspTNI	GGTCTC	1 cut(s)	420
BsrBI	CCGCTC	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	894
BsrI	ACTGG	1 cut(s)	938
BssECI	CCNNGG	3 cut(s)	148, 519, 717
BssMI	GATC	6 cut(s)	232, 257, 468, 477, 484, 856
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	2 cut(s)	34, 124
Bst6I	CTCTTC	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	174
BstDSI	CCRYGG	1 cut(s)	519
BstF5I	GGATG	4 cut(s)	396, 460, 623, 895
BstFNI	CGCG	1 cut(s)	186
BstKTI	GATC	6 cut(s)	235, 260, 471, 480, 487, 859
BstMAI	GTCTC	4 cut(s)	242, 343, 383, 420
BstMBI	GATC	6 cut(s)	232, 257, 468, 477, 484, 856
BstMCI	CGRYCG	2 cut(s)	592, 600
BstMWI	GCNNNNNNNGC	2 cut(s)	588, 884
BstNI	CCWGG	1 cut(s)	150
BstNSI	RCATGY	1 cut(s)	607
BstSCI	CCNGG	3 cut(s)	148, 334, 594
BstSFI	CTRYAG	2 cut(s)	553, 612
BstUI	CGCG	1 cut(s)	186
BstV2I	GAAGAC	1 cut(s)	936
BstX2I	RGATCY	2 cut(s)	232, 484
BstYI	RGATCY	2 cut(s)	232, 484
BstZI	CGGCCG	1 cut(s)	589
BsuI	GTATCC	1 cut(s)	259
BsuRI	GGCC	5 cut(s)	117, 128, 312, 591, 730
BtgI	CCRYGG	1 cut(s)	519
BtrI	CACGTC	1 cut(s)	665
BtsCI	GGATG	4 cut(s)	396, 460, 623, 895
BtsI	GCAGTG	1 cut(s)	731
BtsIMutI	CAGTG	1 cut(s)	731
BtuMI	TCGCGA	1 cut(s)	186
Cfr13I	GGNCC	3 cut(s)	115, 310, 354
CseI	GACGC	1 cut(s)	84
Csp6I	GTAC	2 cut(s)	46, 710
CviAII	CATG	4 cut(s)	92, 301, 538, 604
CviQI	GTAC	2 cut(s)	46, 710
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	6 cut(s)	234, 259, 470, 479, 486, 858
DpnII	GATC	6 cut(s)	232, 257, 468, 477, 484, 856
DriI	GACNNNNNGTC	1 cut(s)	607
EaeI	YGGCCR	1 cut(s)	589
EagI	CGGCCG	1 cut(s)	589
Eam1104I	CTCTTC	1 cut(s)	201
Eam1105I	GACNNNNNGTC	1 cut(s)	607
EarI	CTCTTC	1 cut(s)	201
Ecl136II	GAGCTC	1 cut(s)	687
EclXI	CGGCCG	1 cut(s)	589
Eco24I	GRGCYC	2 cut(s)	562, 689
Eco31I	GGTCTC	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	354
Eco52I	CGGCCG	1 cut(s)	589
Eco53kI	GAGCTC	1 cut(s)	687
EcoICRI	GAGCTC	1 cut(s)	687
EcoRI	GAATTC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	148
EcoT22I	ATGCAT	1 cut(s)	820
EcoT38I	GRGCYC	2 cut(s)	562, 689
Esp3I	CGTCTC	1 cut(s)	343
FaeI	CATG	4 cut(s)	95, 304, 541, 607
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FatI	CATG	4 cut(s)	91, 300, 537, 603
FauI	CCCGC	2 cut(s)	7, 523
FauNDI	CATATG	1 cut(s)	820
FblI	GTMKAC	1 cut(s)	600
Fnu4HI	GCNGC	1 cut(s)	592
FokI	GGATG	4 cut(s)	403, 467, 630, 882
FriOI	GRGCYC	2 cut(s)	562, 689
Fsp4HI	GCNGC	1 cut(s)	592
FspBI	CTAG	2 cut(s)	704, 741
GluI	GCNGC	1 cut(s)	592
GsaI	CCCAGC	1 cut(s)	644
GsuI	CTGGAG	1 cut(s)	792
HaeIII	GGCC	5 cut(s)	117, 128, 312, 591, 730
HapII	CCGG	3 cut(s)	335, 596, 860
HgaI	GACGC	1 cut(s)	84
Hin1II	CATG	4 cut(s)	95, 304, 541, 607
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HinfI	GANTC	6 cut(s)	178, 211, 250, 700, 767, 870
HpaII	CCGG	3 cut(s)	335, 596, 860
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	2 cut(s)	74, 601
Hpy188I	TCNGA	4 cut(s)	265, 439, 482, 944
Hpy8I	GTNNAC	2 cut(s)	74, 601
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	2 cut(s)	127, 788
HpyCH4III	ACNGT	2 cut(s)	34, 124
HpyCH4IV	ACGT	2 cut(s)	243, 664
HpyCH4V	TGCA	5 cut(s)	91, 384, 738, 761, 818
HpyF10VI	GCNNNNNNNGC	2 cut(s)	588, 884
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	2 cut(s)	243, 664
Hsp92II	CATG	4 cut(s)	95, 304, 541, 607
Kzo9I	GATC	6 cut(s)	232, 257, 468, 477, 484, 856
LguI	GCTCTTC	1 cut(s)	201
LmnI	GCTCC	7 cut(s)	11, 83, 506, 565, 692, 721, 779
LweI	GCATC	1 cut(s)	805
MaeI	CTAG	2 cut(s)	704, 741
MaeII	ACGT	2 cut(s)	243, 664
MalI	GATC	6 cut(s)	234, 259, 470, 479, 486, 858
MbiI	CCGCTC	1 cut(s)	14
MboI	GATC	6 cut(s)	232, 257, 468, 477, 484, 856
MboII	GAAGA	4 cut(s)	73, 173, 188, 941
MflI	RGATCY	2 cut(s)	232, 484
MhlI	GDGCHC	3 cut(s)	147, 562, 689
MluCI	AATT	5 cut(s)	5, 137, 567, 751, 801
MlyI	GAGTC	2 cut(s)	244, 694
MnlI	CCTC	9 cut(s)	11, 88, 440, 482, 572, 660, 712, 767, 770
Mph1103I	ATGCAT	1 cut(s)	820
MroXI	GAANNNNTTC	1 cut(s)	137
MseI	TTAA	3 cut(s)	341, 527, 669
MslI	CAYNNNNRTG	2 cut(s)	150, 362
MspI	CCGG	3 cut(s)	335, 596, 860
MspR9I	CCNGG	3 cut(s)	150, 336, 596
Mva1269I	GAATGC	1 cut(s)	763
MvaI	CCWGG	1 cut(s)	150
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	2 cut(s)	588, 884
NciI	CCSGG	2 cut(s)	336, 596
NdeI	CATATG	1 cut(s)	820
NdeII	GATC	6 cut(s)	232, 257, 468, 477, 484, 856
NlaIII	CATG	4 cut(s)	95, 304, 541, 607
NlaIV	GGNNCC	1 cut(s)	561
NmeAIII	GCCGAG	2 cut(s)	372, 655
NruI	TCGCGA	1 cut(s)	186
NsiI	ATGCAT	1 cut(s)	820
NspI	RCATGY	1 cut(s)	607
OliI	CACNNNNGTG	1 cut(s)	150
PciI	ACATGT	1 cut(s)	603
PciSI	GCTCTTC	1 cut(s)	201
PctI	GAATGC	1 cut(s)	763
PdmI	GAANNNNTTC	1 cut(s)	137
PfeI	GAWTC	4 cut(s)	178, 211, 767, 870
PflFI	GACNNNGTC	1 cut(s)	539
PflMI	CCANNNNNTGG	2 cut(s)	124, 155
PkrI	GCNGC	1 cut(s)	593
PleI	GAGTC	2 cut(s)	244, 694
PpsI	GAGTC	2 cut(s)	244, 694
PscI	ACATGT	1 cut(s)	603
PshBI	ATTAAT	1 cut(s)	341
Psp124BI	GAGCTC	1 cut(s)	689
Psp6I	CCWGG	1 cut(s)	148
PspFI	CCCAGC	1 cut(s)	640
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	561
PspPI	GGNCC	3 cut(s)	115, 310, 354
PsuI	RGATCY	2 cut(s)	232, 484
PsyI	GACNNNGTC	1 cut(s)	539
RruI	TCGCGA	1 cut(s)	186
RsaI	GTAC	2 cut(s)	47, 711
RsaNI	GTAC	2 cut(s)	46, 710
RseI	CAYNNNNRTG	2 cut(s)	150, 362
SacI	GAGCTC	1 cut(s)	689
SalI	GTCGAC	1 cut(s)	599
SapI	GCTCTTC	1 cut(s)	201
SaqAI	TTAA	3 cut(s)	341, 527, 669
SatI	GCNGC	1 cut(s)	592
Sau3AI	GATC	6 cut(s)	232, 257, 468, 477, 484, 856
Sau96I	GGNCC	3 cut(s)	115, 310, 354
SchI	GAGTC	2 cut(s)	244, 694
ScrFI	CCNGG	3 cut(s)	150, 336, 596
SduI	GDGCHC	3 cut(s)	147, 562, 689
SfaNI	GCATC	1 cut(s)	805
SfcI	CTRYAG	2 cut(s)	553, 612
SinI	GGWCC	1 cut(s)	354
SmiMI	CAYNNNNRTG	2 cut(s)	150, 362
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
SpeI	ACTAGT	1 cut(s)	740
Sse9I	AATT	5 cut(s)	5, 137, 567, 751, 801
SsiI	CCGC	4 cut(s)	14, 98, 516, 592
SspMI	CTAG	2 cut(s)	704, 741
SstI	GAGCTC	1 cut(s)	689
StyD4I	CCNGG	3 cut(s)	148, 334, 594
TaaI	ACNGT	2 cut(s)	34, 124
TaiI	ACGT	2 cut(s)	246, 667
TaqI	TCGA	5 cut(s)	141, 240, 288, 424, 600
TaqII	GACCGA	1 cut(s)	924
TasI	AATT	5 cut(s)	5, 137, 567, 751, 801
TauI	GCSGC	1 cut(s)	594
TfiI	GAWTC	4 cut(s)	178, 211, 767, 870
Tru1I	TTAA	3 cut(s)	341, 527, 669
Tru9I	TTAA	3 cut(s)	341, 527, 669
TscAI	CASTG	1 cut(s)	731
TspDTI	ATGAA	3 cut(s)	317, 471, 905
TspGWI	ACGGA	2 cut(s)	96, 367
TspRI	CASTG	1 cut(s)	731
Tth111I	GACNNNGTC	1 cut(s)	539
Van91I	CCANNNNNTGG	2 cut(s)	124, 155
VpaK11BI	GGWCC	1 cut(s)	354
VspI	ATTAAT	1 cut(s)	341
XapI	RAATTY	2 cut(s)	137, 567
XceI	RCATGY	1 cut(s)	607
XmiI	GTMKAC	1 cut(s)	600
XmnI	GAANNNNTTC	1 cut(s)	137
XspI	CTAG	2 cut(s)	704, 741
Zsp2I	ATGCAT	1 cut(s)	820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.