Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019391

Physical Location & Seq

Genomic Coordinates Forward (+)

9384729 .. 9385881

Gene Structure 1153 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42773

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCGGATTTCGGTGGAAACGCAGAACCTGGAGAAGTTTGCAACTTCTTCAGGAAGCCAACAACAAAGAGAAATTTCAGAAAGCATACTTCTGAAGCTGAGGACGATGAGGAATCAAATTCTGGGAGTGCGGTATTACCAAGTCAAAGAAAAGCTGCAAAGACTGATTGCGAGTTGTTTTTTTCTAGTGGACCCTCTACGAGCTCTGCATCTGATAATGGGAAAGTAATCCTTGAGTTTAAGTATGGAGATTCCTGCAAGTTTGTGCATGATCGTGGGGACTACAAGTCTGGCTGGCAGATGGAAAGGGAGTGGGATGAAACAGAGAAAGTCAGGAAGAGAAATTTAGCTTTGCTGGCGAGGAAGTTGATGATGATGATGATGACAAGGACGACGCATCATTCAAAGAACAAGAAGTGCTTTGTGTGCAACAAGCCGACTCTTGGCATTTTCAATACAGCTCATGAGATACGCAAAAGGATGGCTGTAGGGGGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016074 GO:0032991 GO:0034247 GO:0034470 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-CCCH

Protein Analysis

166

Amino Acids

18.84

Weight (kDa)

9.34

Isoelectric Point (pI)

29.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019391)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0461311
rosa_laevigata	RLG00000024942
rosa_multiflora	Rmu_ssc0000326.1_g000003
rosa_roxburghii	Rroxscaffold_6G00418420 Rroxscaffold_6G00418710
rosa_samantha	Rh3AG107100 Rh3BG111200 Rh3CG113000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 131
AcsI	RAATTY	3 cut(s)	73, 118, 343
AcuI	CTGAAG	2 cut(s)	34, 114
AfiI	CCNNNNNNNGG	1 cut(s)	443
AgsI	TTSAA	2 cut(s)	405, 454
AhdI	GACNNNNNGTC	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	5 cut(s)	98, 155, 204, 350, 461
AluI	AGCT	5 cut(s)	98, 155, 204, 350, 461
Alw21I	GWGCWC	1 cut(s)	206
AlwNI	CAGNNNCTG	1 cut(s)	29
ApeKI	GCWGC	1 cut(s)	155
ApoI	RAATTY	3 cut(s)	73, 118, 343
AspS9I	GGNCC	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	206
BbvCI	CCTCAGC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	2 cut(s)	295, 475
BciT130I	CCWGG	1 cut(s)	30
BfaI	CTAG	1 cut(s)	186
BfmI	CTRYAG	1 cut(s)	486
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
Bme1390I	CCNGG	1 cut(s)	30
Bme18I	GGWCC	1 cut(s)	191
BmeRI	GACNNNNNGTC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	2 cut(s)	218, 406
BpmI	CTGGAG	1 cut(s)	51
Bpu10I	CCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
BseBI	CCWGG	1 cut(s)	30
BseGI	GGATG	2 cut(s)	322, 486
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseMII	CTCAG	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	206
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmFI	GGGAC	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	206
Bsp143I	GATC	1 cut(s)	271
BspACI	CCGC	2 cut(s)	5, 131
BspCNI	CTCAG	1 cut(s)	91
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	1 cut(s)	193
BssMI	GATC	1 cut(s)	271
Bst2UI	CCWGG	1 cut(s)	30
Bst6I	CTCTTC	1 cut(s)	332
BstC8I	GCNNGC	2 cut(s)	296, 357
BstDEI	CTNAG	1 cut(s)	99
BstF5I	GGATG	2 cut(s)	322, 486
BstKTI	GATC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	2 cut(s)	356, 426
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	28
BstSFI	CTRYAG	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	142
BtsCI	GGATG	2 cut(s)	322, 486
Cac8I	GCNNGC	2 cut(s)	296, 357
CaiI	CAGNNNCTG	1 cut(s)	29
CciI	TCATGA	1 cut(s)	463
Cfr13I	GGNCC	1 cut(s)	191
CseI	GACGC	1 cut(s)	403
CviAII	CATG	2 cut(s)	269, 464
CviJI	RGCY	9 cut(s)	58, 98, 155, 204, 294, 350, 436, 461, 485
CviKI_1	RGCY	9 cut(s)	58, 98, 155, 204, 294, 350, 436, 461, 485
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
DriI	GACNNNNNGTC	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	332
Eam1105I	GACNNNNNGTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	332
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	204
Eco57I	CTGAAG	2 cut(s)	34, 114
EcoICRI	GAGCTC	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	206
FaeI	CATG	2 cut(s)	272, 467
FaiI	YATR	4 cut(s)	87, 246, 270, 465
FalI	AAGNNNNNCTT	4 cut(s)	216, 248, 404, 436
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	2 cut(s)	268, 463
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	2 cut(s)	329, 493
FriOI	GRGCYC	1 cut(s)	206
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	1 cut(s)	186
GluI	GCNGC	1 cut(s)	156
GsuI	CTGGAG	1 cut(s)	51
HgaI	GACGC	1 cut(s)	403
Hin1II	CATG	2 cut(s)	272, 467
HinfI	GANTC	3 cut(s)	113, 251, 439
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188I	TCNGA	3 cut(s)	80, 94, 214
Hpy188III	TCNNGA	3 cut(s)	52, 334, 464
Hpy8I	GTNNAC	1 cut(s)	191
Hpy99I	CGWCG	1 cut(s)	397
HpyCH4V	TGCA	6 cut(s)	42, 158, 209, 258, 268, 429
HpyF10VI	GCNNNNNNNGC	2 cut(s)	356, 426
HpyF3I	CTNAG	1 cut(s)	99
Hsp92II	CATG	2 cut(s)	272, 467
Kzo9I	GATC	1 cut(s)	271
LpnPI	CCDG	9 cut(s)	15, 37, 42, 108, 268, 276, 280, 319, 341
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	2 cut(s)	218, 406
MaeI	CTAG	1 cut(s)	186
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	2 cut(s)	40, 349
MhlI	GDGCHC	1 cut(s)	206
MluCI	AATT	3 cut(s)	73, 118, 343
MlyI	GAGTC	1 cut(s)	433
MnlI	CCTC	4 cut(s)	94, 103, 205, 354
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	273
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	356, 426
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	2 cut(s)	272, 467
NlaIV	GGNNCC	1 cut(s)	193
PagI	TCATGA	1 cut(s)	463
PfeI	GAWTC	2 cut(s)	113, 251
PkrI	GCNGC	1 cut(s)	157
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
Psp124BI	GAGCTC	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	1 cut(s)	191
PstNI	CAGNNNCTG	1 cut(s)	29
RseI	CAYNNNNRTG	1 cut(s)	273
SacI	GAGCTC	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	1 cut(s)	271
Sau96I	GGNCC	1 cut(s)	191
SchI	GAGTC	1 cut(s)	433
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	206
SetI	ASST	6 cut(s)	31, 100, 157, 206, 352, 463
SfaNI	GCATC	2 cut(s)	218, 406
SfcI	CTRYAG	1 cut(s)	486
SinI	GGWCC	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	3 cut(s)	73, 118, 343
SsiI	CCGC	2 cut(s)	5, 131
SspMI	CTAG	1 cut(s)	186
SstI	GAGCTC	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	28
TasI	AATT	3 cut(s)	73, 118, 343
TfiI	GAWTC	2 cut(s)	113, 251
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TseI	GCWGC	1 cut(s)	155
TspDTI	ATGAA	1 cut(s)	333
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	3 cut(s)	73, 118, 343
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.