Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0019391

Physical Location & Seq

Genomic Coordinates Forward (+)

9055980 .. 9056607

Gene Structure 628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG107100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCGGATTTCGGTGGAAACGCTGAACCTGGAGAAGTTTGCAACTTCTTCCGGAAGCCAACAACAAAGAGAAATTTCAGAAAGCGTACTTCTGAAGCTGAGGACGATGAGGAATCAAATTCTGGGAGTGCGAGCTCTGCATCTGATAATGGGAAAGTAATCCTTGAGTCTAAGTCTTCAAAAGAAATCCAAGTTGAACACGATAGCAGAGCAACAGTGACACTGGAGACTGAGACTGAGTTCTCTAGAGACGCCCGGGCAGTTCGAGAGAGAGTTTTTAAACAGTCGGAGGAGGCCTTGAAGGGAACCGGGAAAAGCACAGGCAATGAAAAACTGTATAAAGGGCTCCATGGATATAGTGATCACAAGGCTGGGTTTCGTAGAGAGCTAACAGTGGCCAGTGAGAAAGCGGGAGGTTCCCATGGGCCTCTCAGGGCTTCTGCTCACATGAGGGCTTCCACGCGATTTGATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016074 GO:0032991 GO:0034247 GO:0034470 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-CCCH

Protein Analysis

158

Amino Acids

17.41

Weight (kDa)

7.87

Isoelectric Point (pI)

35.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019391)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0461311
rosa_laevigata	RLG00000024942
rosa_multiflora	Rmu_ssc0000326.1_g000003
rosa_roxburghii	Rroxscaffold_6G00418420 Rroxscaffold_6G00418710
rosa_samantha	Rh3AG107100 Rh3BG111200 Rh3CG113000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	463
AccIII	TCCGGA	1 cut(s)	51
AciI	CCGC	2 cut(s)	5, 410
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	2 cut(s)	73, 118
AcuI	CTGAAG	1 cut(s)	114
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	1 cut(s)	88
AgsI	TTSAA	3 cut(s)	180, 197, 301
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	3 cut(s)	98, 135, 388
AluI	AGCT	3 cut(s)	98, 135, 388
Alw21I	GWGCWC	1 cut(s)	137
Alw26I	GTCTC	3 cut(s)	221, 227, 243
Ama87I	CYCGRG	1 cut(s)	255
Aor13HI	TCCGGA	1 cut(s)	51
AoxI	GGCC	3 cut(s)	294, 396, 425
ApoI	RAATTY	2 cut(s)	73, 118
AspS9I	GGNCC	1 cut(s)	425
AsuC2I	CCSGG	3 cut(s)	256, 257, 310
AvaI	CYCGRG	1 cut(s)	255
BalI	TGGCCA	1 cut(s)	398
BanII	GRGCYC	2 cut(s)	137, 348
BbsI	GAAGAC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	137
BbvCI	CCTCAGC	1 cut(s)	99
BciT130I	CCWGG	1 cut(s)	30
BclI	TGATCA	1 cut(s)	361
BcnI	CCSGG	3 cut(s)	256, 257, 310
BcoDI	GTCTC	3 cut(s)	221, 227, 243
BfaI	CTAG	1 cut(s)	246
Bme1390I	CCNGG	4 cut(s)	30, 256, 257, 310
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	425
BmiI	GGNNCC	3 cut(s)	307, 347, 418
BmrFI	CCNGG	4 cut(s)	30, 256, 257, 310
BmsI	GCATC	1 cut(s)	149
BpiI	GAAGAC	1 cut(s)	168
BpmI	CTGGAG	2 cut(s)	51, 245
Bpu10I	CCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	185
BpuMI	CCSGG	3 cut(s)	256, 257, 310
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	3 cut(s)	255, 349, 421
BsaWI	WCCGGW	1 cut(s)	51
Bse1I	ACTGG	2 cut(s)	228, 399
Bse3DI	GCAATG	1 cut(s)	331
BseAI	TCCGGA	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	3 cut(s)	255, 349, 421
BseMI	GCAATG	1 cut(s)	331
BseMII	CTCAG	4 cut(s)	90, 222, 228, 445
BseNI	ACTGG	2 cut(s)	228, 399
BseRI	GAGGAG	1 cut(s)	305
BseYI	CCCAGC	1 cut(s)	371
Bsh1236I	CGCG	1 cut(s)	463
BshFI	GGCC	3 cut(s)	296, 398, 427
BsiHKAI	GWGCWC	1 cut(s)	137
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	3 cut(s)	52, 256, 309
BsmAI	GTCTC	3 cut(s)	221, 227, 243
BsmBI	CGTCTC	1 cut(s)	243
BsnI	GGCC	3 cut(s)	296, 398, 427
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	137, 348
Bsp13I	TCCGGA	1 cut(s)	51
Bsp143I	GATC	1 cut(s)	361
Bsp19I	CCATGG	2 cut(s)	349, 421
BspACI	CCGC	2 cut(s)	5, 410
BspANI	GGCC	3 cut(s)	296, 398, 427
BspCNI	CTCAG	4 cut(s)	91, 223, 229, 444
BspEI	TCCGGA	1 cut(s)	51
BspFNI	CGCG	1 cut(s)	463
BspLI	GGNNCC	3 cut(s)	307, 347, 418
BsrDI	GCAATG	1 cut(s)	331
BsrI	ACTGG	2 cut(s)	228, 399
BssECI	CCNNGG	3 cut(s)	255, 349, 421
BssMI	GATC	1 cut(s)	361
BssNI	GRCGYC	1 cut(s)	252
BssT1I	CCWWGG	2 cut(s)	349, 421
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	4 cut(s)	217, 285, 336, 394
BstACI	GRCGYC	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	5 cut(s)	99, 171, 231, 237, 431
BstDSI	CCRYGG	2 cut(s)	349, 421
BstFNI	CGCG	1 cut(s)	463
BstKTI	GATC	1 cut(s)	364
BstMAI	GTCTC	3 cut(s)	221, 227, 243
BstMBI	GATC	1 cut(s)	361
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	4 cut(s)	28, 254, 255, 308
BstUI	CGCG	1 cut(s)	463
BstV2I	GAAGAC	1 cut(s)	168
BsuRI	GGCC	3 cut(s)	296, 398, 427
BtgI	CCRYGG	2 cut(s)	349, 421
BtsIMutI	CAGTG	4 cut(s)	221, 222, 399, 406
Cac8I	GCNNGC	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	425
Cfr9I	CCCGGG	1 cut(s)	255
CseI	GACGC	1 cut(s)	260
Csp6I	GTAC	1 cut(s)	87
CspCI	CAANNNNNGTGG	1 cut(s)	448
CviAII	CATG	3 cut(s)	350, 422, 448
CviQI	GTAC	1 cut(s)	87
DdeI	CTNAG	5 cut(s)	99, 171, 231, 237, 431
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
DraI	TTTAAA	1 cut(s)	280
EaeI	YGGCCR	1 cut(s)	396
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	135
Eco130I	CCWWGG	2 cut(s)	349, 421
Eco147I	AGGCCT	1 cut(s)	296
Eco24I	GRGCYC	2 cut(s)	137, 348
Eco53kI	GAGCTC	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	135
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	2 cut(s)	349, 421
EcoT38I	GRGCYC	2 cut(s)	137, 348
ErhI	CCWWGG	2 cut(s)	349, 421
Esp3I	CGTCTC	1 cut(s)	243
FaeI	CATG	3 cut(s)	353, 425, 451
FaiI	YATR	5 cut(s)	339, 351, 357, 423, 449
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
FatI	CATG	3 cut(s)	349, 421, 447
FauI	CCCGC	1 cut(s)	403
FbaI	TGATCA	1 cut(s)	361
FriOI	GRGCYC	2 cut(s)	137, 348
FspBI	CTAG	1 cut(s)	246
GsaI	CCCAGC	1 cut(s)	375
GsuI	CTGGAG	2 cut(s)	51, 245
HaeIII	GGCC	3 cut(s)	296, 398, 427
HapII	CCGG	3 cut(s)	52, 256, 309
HgaI	GACGC	1 cut(s)	260
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	3 cut(s)	353, 425, 451
HinfI	GANTC	2 cut(s)	113, 167
HpaII	CCGG	3 cut(s)	52, 256, 309
Hpy188I	TCNGA	4 cut(s)	80, 94, 145, 289
Hpy188III	TCNNGA	3 cut(s)	52, 246, 266
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	4 cut(s)	217, 285, 336, 394
HpyCH4V	TGCA	2 cut(s)	42, 140
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	5 cut(s)	99, 171, 231, 237, 431
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	3 cut(s)	353, 425, 451
Kpn2I	TCCGGA	1 cut(s)	51
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	1 cut(s)	361
LmnI	GCTCC	1 cut(s)	351
LweI	GCATC	1 cut(s)	149
MaeI	CTAG	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MboII	GAAGA	2 cut(s)	40, 168
MhlI	GDGCHC	2 cut(s)	137, 348
MlsI	TGGCCA	1 cut(s)	398
MluCI	AATT	2 cut(s)	73, 118
MluNI	TGGCCA	1 cut(s)	398
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	7 cut(s)	94, 103, 283, 286, 407, 438, 444
Mox20I	TGGCCA	1 cut(s)	398
MroI	TCCGGA	1 cut(s)	51
MscI	TGGCCA	1 cut(s)	398
MseI	TTAA	1 cut(s)	279
Msp20I	TGGCCA	1 cut(s)	398
MspI	CCGG	3 cut(s)	52, 256, 309
MspR9I	CCNGG	4 cut(s)	30, 256, 257, 310
MvaI	CCWGG	1 cut(s)	30
MvnI	CGCG	1 cut(s)	463
MwoI	GCNNNNNNNGC	1 cut(s)	137
NciI	CCSGG	3 cut(s)	256, 257, 310
NcoI	CCATGG	2 cut(s)	349, 421
NdeII	GATC	1 cut(s)	361
NlaIII	CATG	3 cut(s)	353, 425, 451
NlaIV	GGNNCC	3 cut(s)	307, 347, 418
NmuCI	GTSAC	1 cut(s)	217
PceI	AGGCCT	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	113
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
Psp124BI	GAGCTC	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	3 cut(s)	307, 347, 418
PspPI	GGNCC	1 cut(s)	425
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
SacI	GAGCTC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	279
Sau3AI	GATC	1 cut(s)	361
Sau96I	GGNCC	1 cut(s)	425
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	4 cut(s)	30, 256, 257, 310
SduI	GDGCHC	2 cut(s)	137, 348
SetI	ASST	5 cut(s)	31, 100, 137, 390, 418
SfaNI	GCATC	1 cut(s)	149
SmaI	CCCGGG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SrfI	GCCCGGGC	1 cut(s)	257
Sse9I	AATT	2 cut(s)	73, 118
SseBI	AGGCCT	1 cut(s)	296
SsiI	CCGC	2 cut(s)	5, 410
SspMI	CTAG	1 cut(s)	246
SstI	GAGCTC	1 cut(s)	137
StuI	AGGCCT	1 cut(s)	296
StyD4I	CCNGG	4 cut(s)	28, 254, 255, 308
StyI	CCWWGG	2 cut(s)	349, 421
TaaI	ACNGT	4 cut(s)	217, 285, 336, 394
TaqI	TCGA	1 cut(s)	265
TasI	AATT	2 cut(s)	73, 118
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	4 cut(s)	222, 228, 399, 406
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	342
TspMI	CCCGGG	1 cut(s)	255
TspRI	CASTG	4 cut(s)	222, 228, 399, 406
XapI	RAATTY	2 cut(s)	73, 118
XbaI	TCTAGA	1 cut(s)	245
XmaI	CCCGGG	1 cut(s)	255
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.