Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000326.1

Orthogroup ID

OG0019391

Physical Location & Seq

Genomic Coordinates Reverse (-)

29401 .. 31825

Gene Structure 2425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000326.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atgtcaaagcgaatttgggtgaggcgaaatctcttcaaggtgaatcttggtgatgtgaaacctctcaaggaggatttggtttgcaacttcttcaggaagccaacaacaaagagaaatttcagaaagcatacttctgaagctgaggacgatgaggaatcaaattctgggagtgcggtattaccaagtcaaagaaaagctgcaaagactgatggcaagttgtttttttatagtggaccctctacgagctctgcatctgataatgggaaagtaatccttgagtttaagtcttcaaaagaaatccgatcggaggaggccttgaagggaaccgggaaaagcacaggcaatgaaaaactgtataaagggctccatggatatactgatcacaaggctgggtttcgtagagagctaacagtggccagtgagaaagcgggaggttcccatgggcctctcagggcttctgctcacatcagggcttccaggcgatttgattattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016074 GO:0032991 GO:0034247 GO:0034470 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-CCCH

Protein Analysis

164

Amino Acids

18.33

Weight (kDa)

9.96

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019391)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0461311
rosa_laevigata	RLG00000024942
rosa_multiflora	Rmu_ssc0000326.1_g000003
rosa_roxburghii	Rroxscaffold_6G00418420 Rroxscaffold_6G00418710
rosa_samantha	Rh3AG107100 Rh3BG111200 Rh3CG113000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	173, 428
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	3 cut(s)	12, 115, 160
AcuI	CTGAAG	2 cut(s)	76, 156
AfiI	CCNNNNNNNGG	1 cut(s)	307
AgsI	TTSAA	3 cut(s)	37, 291, 319
AjnI	CCWGG	1 cut(s)	476
AluBI	AGCT	4 cut(s)	140, 197, 246, 406
AluI	AGCT	4 cut(s)	140, 197, 246, 406
Alw21I	GWGCWC	1 cut(s)	248
AoxI	GGCC	3 cut(s)	312, 414, 443
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	3 cut(s)	12, 115, 160
AspS9I	GGNCC	2 cut(s)	233, 443
AsuC2I	CCSGG	1 cut(s)	328
AsuHPI	GGTGA	3 cut(s)	31, 52, 62
AvaII	GGWCC	1 cut(s)	233
BalI	TGGCCA	1 cut(s)	416
BanII	GRGCYC	2 cut(s)	248, 366
BbsI	GAAGAC	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	248
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	1 cut(s)	203
BciT130I	CCWGG	1 cut(s)	478
BclI	TGATCA	1 cut(s)	379
BcnI	CCSGG	1 cut(s)	328
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	2 cut(s)	328, 478
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	2 cut(s)	233, 443
BmiI	GGNNCC	4 cut(s)	235, 325, 365, 436
BmrFI	CCNGG	2 cut(s)	328, 478
BmsI	GCATC	1 cut(s)	260
BpiI	GAAGAC	1 cut(s)	279
Bpu10I	CCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	2 cut(s)	50, 296
BpuMI	CCSGG	1 cut(s)	328
BsaJI	CCNNGG	2 cut(s)	367, 439
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse1I	ACTGG	1 cut(s)	417
Bse3DI	GCAATG	1 cut(s)	349
BseBI	CCWGG	1 cut(s)	478
BseDI	CCNNGG	2 cut(s)	367, 439
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	2 cut(s)	132, 463
BseNI	ACTGG	1 cut(s)	417
BseRI	GAGGAG	1 cut(s)	323
BseXI	GCAGC	1 cut(s)	184
BseYI	CCCAGC	1 cut(s)	389
Bsh1285I	CGRYCG	1 cut(s)	305
BshFI	GGCC	3 cut(s)	314, 416, 445
BsiEI	CGRYCG	1 cut(s)	305
BsiHKAI	GWGCWC	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	327
BslI	CCNNNNNNNGG	1 cut(s)	307
BsnI	GGCC	3 cut(s)	314, 416, 445
Bsp1286I	GDGCHC	2 cut(s)	248, 366
Bsp143I	GATC	2 cut(s)	302, 379
Bsp19I	CCATGG	2 cut(s)	367, 439
BspACI	CCGC	2 cut(s)	173, 428
BspANI	GGCC	3 cut(s)	314, 416, 445
BspCNI	CTCAG	2 cut(s)	133, 462
BspLI	GGNNCC	4 cut(s)	235, 325, 365, 436
BsrDI	GCAATG	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	417
BssECI	CCNNGG	2 cut(s)	367, 439
BssMI	GATC	2 cut(s)	302, 379
BssT1I	CCWWGG	2 cut(s)	367, 439
Bst2UI	CCWGG	1 cut(s)	478
Bst4CI	ACNGT	2 cut(s)	354, 412
Bst6I	CTCTTC	1 cut(s)	38
BstDEI	CTNAG	2 cut(s)	141, 449
BstDSI	CCRYGG	2 cut(s)	367, 439
BstKTI	GATC	2 cut(s)	305, 382
BstMBI	GATC	2 cut(s)	302, 379
BstMCI	CGRYCG	1 cut(s)	305
BstNI	CCWGG	1 cut(s)	478
BstSCI	CCNGG	2 cut(s)	326, 476
BstV1I	GCAGC	1 cut(s)	184
BstV2I	GAAGAC	1 cut(s)	279
BsuRI	GGCC	3 cut(s)	314, 416, 445
BtgI	CCRYGG	2 cut(s)	367, 439
BtsIMutI	CAGTG	2 cut(s)	417, 424
Cfr13I	GGNCC	2 cut(s)	233, 443
CviAII	CATG	2 cut(s)	368, 440
DdeI	CTNAG	2 cut(s)	141, 449
DpnI	GATC	2 cut(s)	304, 381
DpnII	GATC	2 cut(s)	302, 379
EaeI	YGGCCR	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Ecl136II	GAGCTC	1 cut(s)	246
Eco130I	CCWWGG	2 cut(s)	367, 439
Eco147I	AGGCCT	1 cut(s)	314
Eco24I	GRGCYC	2 cut(s)	248, 366
Eco47I	GGWCC	1 cut(s)	233
Eco53kI	GAGCTC	1 cut(s)	246
Eco57I	CTGAAG	2 cut(s)	76, 156
EcoICRI	GAGCTC	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	476
EcoT14I	CCWWGG	2 cut(s)	367, 439
EcoT38I	GRGCYC	2 cut(s)	248, 366
ErhI	CCWWGG	2 cut(s)	367, 439
FaeI	CATG	2 cut(s)	371, 443
FaiI	YATR	6 cut(s)	129, 228, 357, 369, 375, 441
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FatI	CATG	2 cut(s)	367, 439
FauI	CCCGC	1 cut(s)	421
FbaI	TGATCA	1 cut(s)	379
Fnu4HI	GCNGC	1 cut(s)	198
FriOI	GRGCYC	2 cut(s)	248, 366
Fsp4HI	GCNGC	1 cut(s)	198
GluI	GCNGC	1 cut(s)	198
GsaI	CCCAGC	1 cut(s)	393
HaeIII	GGCC	3 cut(s)	314, 416, 445
HapII	CCGG	1 cut(s)	327
Hin1II	CATG	2 cut(s)	371, 443
HinfI	GANTC	2 cut(s)	43, 155
HpaII	CCGG	1 cut(s)	327
HphI	GGTGA	3 cut(s)	31, 52, 62
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	5 cut(s)	122, 136, 256, 302, 307
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	313
HpyCH4III	ACNGT	2 cut(s)	354, 412
HpyCH4V	TGCA	3 cut(s)	84, 200, 251
HpyF3I	CTNAG	2 cut(s)	141, 449
Hsp92II	CATG	2 cut(s)	371, 443
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	2 cut(s)	302, 379
LmnI	GCTCC	1 cut(s)	369
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	1 cut(s)	260
MalI	GATC	2 cut(s)	304, 381
MboI	GATC	2 cut(s)	302, 379
MboII	GAAGA	3 cut(s)	25, 82, 279
MhlI	GDGCHC	2 cut(s)	248, 366
MlsI	TGGCCA	1 cut(s)	416
MluCI	AATT	3 cut(s)	12, 115, 160
MluNI	TGGCCA	1 cut(s)	416
Mox20I	TGGCCA	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	416
MseI	TTAA	1 cut(s)	282
Msp20I	TGGCCA	1 cut(s)	416
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	2 cut(s)	328, 478
MvaI	CCWGG	1 cut(s)	478
NciI	CCSGG	1 cut(s)	328
NcoI	CCATGG	2 cut(s)	367, 439
NdeII	GATC	2 cut(s)	302, 379
NlaIII	CATG	2 cut(s)	371, 443
NlaIV	GGNNCC	4 cut(s)	235, 325, 365, 436
PceI	AGGCCT	1 cut(s)	314
PfeI	GAWTC	2 cut(s)	43, 155
PkrI	GCNGC	1 cut(s)	199
Ple19I	CGATCG	1 cut(s)	305
Psp124BI	GAGCTC	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	476
PspFI	CCCAGC	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	476
PspN4I	GGNNCC	4 cut(s)	235, 325, 365, 436
PspPI	GGNCC	2 cut(s)	233, 443
PvuI	CGATCG	1 cut(s)	305
SacI	GAGCTC	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	2 cut(s)	302, 379
Sau96I	GGNCC	2 cut(s)	233, 443
ScrFI	CCNGG	2 cut(s)	328, 478
SduI	GDGCHC	2 cut(s)	248, 366
SetI	ASST	7 cut(s)	42, 64, 142, 199, 248, 408, 436
SfaNI	GCATC	1 cut(s)	260
SinI	GGWCC	1 cut(s)	233
SmlI	CTYRAG	2 cut(s)	65, 275
SmoI	CTYRAG	2 cut(s)	65, 275
Sse9I	AATT	3 cut(s)	12, 115, 160
SseBI	AGGCCT	1 cut(s)	314
SsiI	CCGC	2 cut(s)	173, 428
SstI	GAGCTC	1 cut(s)	248
StuI	AGGCCT	1 cut(s)	314
StyD4I	CCNGG	2 cut(s)	326, 476
StyI	CCWWGG	2 cut(s)	367, 439
TaaI	ACNGT	2 cut(s)	354, 412
TasI	AATT	3 cut(s)	12, 115, 160
TfiI	GAWTC	2 cut(s)	43, 155
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	2 cut(s)	417, 424
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	360
TspRI	CASTG	2 cut(s)	417, 424
VpaK11BI	GGWCC	1 cut(s)	233
XapI	RAATTY	3 cut(s)	12, 115, 160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.