Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0019391

Physical Location & Seq

Genomic Coordinates Reverse (-)

40289943 .. 40292188

Gene Structure 2246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00418710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCGGATTTCGGTGGAAACGCAGAACCTGGAGAAGTTGCAAGCTTCTTCAGGAAGCCAACTACAAAGAGAAATTTCAGAAAGCGTACTTCTGAAGCTGAGGACGATGAGGAATCAAATTCTGGGAGTGCAGTATTACCAAGTCAAAGAAAAGCTGCAAAGCCTGATGGCAAGTTGTTTTTTTCTAGTCGACCCTCTAAGAGCTCCGCATCTGATGATGGGAAAGTAATCCTTGAGTTTAAGTCTTCAAAAGAAATTCAAGTTGGACACGATAGCAGAGCAACAGTGACACTGGAGACTGAGACTGAGTTCTCTAGAGACGCCCGGGCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016074 GO:0032991 GO:0034247 GO:0034470 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-CCCH

Protein Analysis

111

Amino Acids

12.13

Weight (kDa)

6.61

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019391)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0461311
rosa_laevigata	RLG00000024942
rosa_multiflora	Rmu_ssc0000326.1_g000003
rosa_roxburghii	Rroxscaffold_6G00418420 Rroxscaffold_6G00418710
rosa_samantha	Rh3AG107100 Rh3BG111200 Rh3CG113000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	190
AciI	CCGC	2 cut(s)	5, 207
AcsI	RAATTY	3 cut(s)	73, 118, 255
AcuI	CTGAAG	2 cut(s)	34, 114
AcyI	GRCGYC	1 cut(s)	321
AfaI	GTAC	1 cut(s)	88
AgsI	TTSAA	2 cut(s)	249, 260
AjnI	CCWGG	1 cut(s)	28
AjuI	GAANNNNNNNTTGG	2 cut(s)	246, 278
AluBI	AGCT	4 cut(s)	45, 98, 155, 204
AluI	AGCT	4 cut(s)	45, 98, 155, 204
Alw21I	GWGCWC	1 cut(s)	206
Alw26I	GTCTC	3 cut(s)	290, 296, 312
AlwNI	CAGNNNCTG	1 cut(s)	29
Ama87I	CYCGRG	1 cut(s)	324
ApeKI	GCWGC	1 cut(s)	155
ApoI	RAATTY	3 cut(s)	73, 118, 255
AsuC2I	CCSGG	2 cut(s)	325, 326
AvaI	CYCGRG	1 cut(s)	324
BanII	GRGCYC	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	206
BbvCI	CCTCAGC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	2 cut(s)	161, 212
BciT130I	CCWGG	1 cut(s)	30
BcnI	CCSGG	2 cut(s)	325, 326
BcoDI	GTCTC	3 cut(s)	290, 296, 312
BfaI	CTAG	2 cut(s)	186, 315
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
Bme1390I	CCNGG	3 cut(s)	30, 325, 326
BmeT110I	CYCGRG	1 cut(s)	324
BmrFI	CCNGG	3 cut(s)	30, 325, 326
BmsI	GCATC	1 cut(s)	218
BpiI	GAAGAC	1 cut(s)	237
BpmI	CTGGAG	2 cut(s)	51, 314
Bpu10I	CCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	2 cut(s)	325, 326
BsaHI	GRCGYC	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	324
Bse1I	ACTGG	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	324
BseMII	CTCAG	3 cut(s)	90, 291, 297
BseNI	ACTGG	1 cut(s)	297
BseXI	GCAGC	1 cut(s)	142
BsgI	GTGCAG	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	206
BsiHKCI	CYCGRG	1 cut(s)	324
BsiSI	CCGG	1 cut(s)	325
BsmAI	GTCTC	3 cut(s)	290, 296, 312
BsmBI	CGTCTC	1 cut(s)	312
BsoBI	CYCGRG	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	206
BspACI	CCGC	2 cut(s)	5, 207
BspCNI	CTCAG	3 cut(s)	91, 292, 298
BsrI	ACTGG	1 cut(s)	297
BssECI	CCNNGG	1 cut(s)	324
BssNI	GRCGYC	1 cut(s)	321
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	286
BstACI	GRCGYC	1 cut(s)	321
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	4 cut(s)	99, 198, 300, 306
BstMAI	GTCTC	3 cut(s)	290, 296, 312
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	3 cut(s)	28, 323, 324
BstV1I	GCAGC	1 cut(s)	142
BstV2I	GAAGAC	1 cut(s)	237
BtsIMutI	CAGTG	2 cut(s)	290, 291
Cac8I	GCNNGC	1 cut(s)	43
CaiI	CAGNNNCTG	1 cut(s)	29
Cfr9I	CCCGGG	1 cut(s)	324
CseI	GACGC	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	87
CviJI	RGCY	6 cut(s)	45, 58, 98, 155, 163, 204
CviKI_1	RGCY	6 cut(s)	45, 58, 98, 155, 163, 204
CviQI	GTAC	1 cut(s)	87
DdeI	CTNAG	4 cut(s)	99, 198, 300, 306
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	206
Eco53kI	GAGCTC	1 cut(s)	204
Eco57I	CTGAAG	2 cut(s)	34, 114
Eco88I	CYCGRG	1 cut(s)	324
EcoICRI	GAGCTC	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	206
Esp3I	CGTCTC	1 cut(s)	312
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FblI	GTMKAC	1 cut(s)	190
Fnu4HI	GCNGC	1 cut(s)	156
FriOI	GRGCYC	1 cut(s)	206
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	2 cut(s)	186, 315
GluI	GCNGC	1 cut(s)	156
GsuI	CTGGAG	2 cut(s)	51, 314
HapII	CCGG	1 cut(s)	325
HgaI	GACGC	1 cut(s)	329
Hin1I	GRCGYC	1 cut(s)	321
HincII	GTYRAC	1 cut(s)	191
HindII	GTYRAC	1 cut(s)	191
HindIII	AAGCTT	1 cut(s)	43
HinfI	GANTC	1 cut(s)	113
HpaII	CCGG	1 cut(s)	325
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188I	TCNGA	3 cut(s)	80, 94, 214
Hpy188III	TCNNGA	2 cut(s)	52, 315
Hpy8I	GTNNAC	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4V	TGCA	3 cut(s)	41, 131, 158
HpyF3I	CTNAG	4 cut(s)	99, 198, 300, 306
Hsp92I	GRCGYC	1 cut(s)	321
LmnI	GCTCC	1 cut(s)	209
LpnPI	CCDG	6 cut(s)	15, 37, 42, 108, 177, 278
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	1 cut(s)	218
MaeI	CTAG	2 cut(s)	186, 315
MaeIII	GTNAC	1 cut(s)	286
MboII	GAAGA	2 cut(s)	40, 237
MhlI	GDGCHC	1 cut(s)	206
MluCI	AATT	3 cut(s)	73, 118, 255
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	3 cut(s)	94, 103, 205
MseI	TTAA	1 cut(s)	240
MspI	CCGG	1 cut(s)	325
MspR9I	CCNGG	3 cut(s)	30, 325, 326
MvaI	CCWGG	1 cut(s)	30
NciI	CCSGG	2 cut(s)	325, 326
NmuCI	GTSAC	1 cut(s)	286
PfeI	GAWTC	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	157
Psp124BI	GAGCTC	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	29
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
SacI	GAGCTC	1 cut(s)	206
SalI	GTCGAC	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	1 cut(s)	156
ScrFI	CCNGG	3 cut(s)	30, 325, 326
SduI	GDGCHC	1 cut(s)	206
SetI	ASST	5 cut(s)	31, 47, 100, 157, 206
SfaNI	GCATC	1 cut(s)	218
SmaI	CCCGGG	1 cut(s)	326
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
SrfI	GCCCGGGC	1 cut(s)	326
Sse9I	AATT	3 cut(s)	73, 118, 255
SsiI	CCGC	2 cut(s)	5, 207
SspMI	CTAG	2 cut(s)	186, 315
SstI	GAGCTC	1 cut(s)	206
StyD4I	CCNGG	3 cut(s)	28, 323, 324
TaaI	ACNGT	1 cut(s)	286
TaqI	TCGA	1 cut(s)	190
TasI	AATT	3 cut(s)	73, 118, 255
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	2 cut(s)	291, 297
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	286
TspMI	CCCGGG	1 cut(s)	324
TspRI	CASTG	2 cut(s)	291, 297
XapI	RAATTY	3 cut(s)	73, 118, 255
XbaI	TCTAGA	1 cut(s)	314
XmaI	CCCGGG	1 cut(s)	324
XmiI	GTMKAC	1 cut(s)	190
XspI	CTAG	2 cut(s)	186, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.