Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0019391

Physical Location & Seq

Genomic Coordinates Reverse (-)

40562984 .. 40563620

Gene Structure 637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024942

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCGGATTTCAGTGGAAACGTTGAACCTGGAGAAGTTTGCAACTTCTTCAGGAAGCCAATAACAAAGAGAAATTTCAGAAAGCGTACTTCTGAAGCTGAGGACGACGAGGAATCGAATTCTGGGAGTGCTGTATTGCCAAGTCAAAGAAAAGCTGCAAAGCCTGATGGGCTGATGGCAAAGCAACAGCTAGCGACACTGGAGACCGAGACTGAGTTCTCTAGAGACGCCCGGGCAGTTCGAGAGAGAGTTTTTAAACAGTCGGAGGAGGCCTTGAAGGGAACCAGGAAAAGCACAGGCAATGAAAAACTGTATAAAGGGCTCCATGGATATACTGATCACAAGGCTGGGTTTCGTAGAGAGCTAACAGTGGCCAGTGAGAAAGCGGGAGGTTCCCATGGGCCTCTCAGGGCATCTGCTCACATCAGGGCTTCCACGCGATTTGATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016074 GO:0032991 GO:0034247 GO:0034470 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-CCCH

Protein Analysis

151

Amino Acids

16.72

Weight (kDa)

9.55

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019391)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0461311
rosa_laevigata	RLG00000024942
rosa_multiflora	Rmu_ssc0000326.1_g000003
rosa_roxburghii	Rroxscaffold_6G00418420 Rroxscaffold_6G00418710
rosa_samantha	Rh3AG107100 Rh3BG111200 Rh3CG113000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	439
AciI	CCGC	2 cut(s)	5, 386
AclI	AACGTT	1 cut(s)	21
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	2 cut(s)	73, 118
AcuI	CTGAAG	2 cut(s)	34, 114
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	1 cut(s)	88
AgsI	TTSAA	2 cut(s)	26, 277
AjnI	CCWGG	2 cut(s)	28, 284
AluBI	AGCT	4 cut(s)	98, 155, 190, 364
AluI	AGCT	4 cut(s)	98, 155, 190, 364
Alw26I	GTCTC	3 cut(s)	197, 203, 219
Ama87I	CYCGRG	1 cut(s)	231
AoxI	GGCC	3 cut(s)	270, 372, 401
ApeKI	GCWGC	1 cut(s)	155
ApoI	RAATTY	2 cut(s)	73, 118
AspS9I	GGNCC	1 cut(s)	401
AsuC2I	CCSGG	2 cut(s)	232, 233
AsuNHI	GCTAGC	1 cut(s)	190
AvaI	CYCGRG	1 cut(s)	231
BalI	TGGCCA	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	324
BbvCI	CCTCAGC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	2 cut(s)	161, 169
BciT130I	CCWGG	2 cut(s)	30, 286
BclI	TGATCA	1 cut(s)	337
BcnI	CCSGG	2 cut(s)	232, 233
BcoDI	GTCTC	3 cut(s)	197, 203, 219
BfaI	CTAG	2 cut(s)	191, 222
BglI	GCCNNNNNGGC	1 cut(s)	169
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
Bme1390I	CCNGG	4 cut(s)	30, 232, 233, 286
BmeT110I	CYCGRG	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	3 cut(s)	283, 323, 394
BmrFI	CCNGG	4 cut(s)	30, 232, 233, 286
BmsI	GCATC	1 cut(s)	422
BmtI	GCTAGC	1 cut(s)	194
BpmI	CTGGAG	2 cut(s)	51, 221
Bpu10I	CCTNAGC	1 cut(s)	99
BpuMI	CCSGG	2 cut(s)	232, 233
BsaHI	GRCGYC	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	3 cut(s)	231, 325, 397
Bse1I	ACTGG	2 cut(s)	204, 375
Bse3DI	GCAATG	1 cut(s)	307
BseBI	CCWGG	2 cut(s)	30, 286
BseDI	CCNNGG	3 cut(s)	231, 325, 397
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	3 cut(s)	90, 204, 421
BseNI	ACTGG	2 cut(s)	204, 375
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	142
BseYI	CCCAGC	1 cut(s)	347
Bsh1236I	CGCG	1 cut(s)	439
BshFI	GGCC	3 cut(s)	272, 374, 403
BsiHKCI	CYCGRG	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	232
BsmAI	GTCTC	3 cut(s)	197, 203, 219
BsmBI	CGTCTC	1 cut(s)	219
BsnI	GGCC	3 cut(s)	272, 374, 403
Bso31I	GGTCTC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	337
Bsp19I	CCATGG	2 cut(s)	325, 397
BspACI	CCGC	2 cut(s)	5, 386
BspANI	GGCC	3 cut(s)	272, 374, 403
BspCNI	CTCAG	3 cut(s)	91, 205, 420
BspFNI	CGCG	1 cut(s)	439
BspLI	GGNNCC	3 cut(s)	283, 323, 394
BspOI	GCTAGC	1 cut(s)	194
BspTNI	GGTCTC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	307
BsrI	ACTGG	2 cut(s)	204, 375
BssECI	CCNNGG	3 cut(s)	231, 325, 397
BssMI	GATC	1 cut(s)	337
BssNI	GRCGYC	1 cut(s)	228
BssT1I	CCWWGG	2 cut(s)	325, 397
Bst2UI	CCWGG	2 cut(s)	30, 286
Bst4CI	ACNGT	3 cut(s)	261, 312, 370
BstACI	GRCGYC	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	3 cut(s)	99, 213, 407
BstDSI	CCRYGG	2 cut(s)	325, 397
BstFNI	CGCG	1 cut(s)	439
BstKTI	GATC	1 cut(s)	340
BstMAI	GTCTC	3 cut(s)	197, 203, 219
BstMBI	GATC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	1 cut(s)	169
BstNI	CCWGG	2 cut(s)	30, 286
BstSCI	CCNGG	4 cut(s)	28, 230, 231, 284
BstUI	CGCG	1 cut(s)	439
BstV1I	GCAGC	1 cut(s)	142
BsuRI	GGCC	3 cut(s)	272, 374, 403
BtgI	CCRYGG	2 cut(s)	325, 397
BtsIMutI	CAGTG	4 cut(s)	19, 197, 375, 382
Cac8I	GCNNGC	1 cut(s)	192
Cfr13I	GGNCC	1 cut(s)	401
Cfr9I	CCCGGG	1 cut(s)	231
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	87
CspCI	CAANNNNNGTGG	1 cut(s)	424
CviAII	CATG	2 cut(s)	326, 398
CviQI	GTAC	1 cut(s)	87
DdeI	CTNAG	3 cut(s)	99, 213, 407
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
DraI	TTTAAA	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	372
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	325, 397
Eco147I	AGGCCT	1 cut(s)	272
Eco24I	GRGCYC	1 cut(s)	324
Eco31I	GGTCTC	1 cut(s)	197
Eco57I	CTGAAG	2 cut(s)	34, 114
Eco88I	CYCGRG	1 cut(s)	231
EcoRI	GAATTC	1 cut(s)	118
EcoRII	CCWGG	2 cut(s)	28, 284
EcoT14I	CCWWGG	2 cut(s)	325, 397
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	2 cut(s)	325, 397
Esp3I	CGTCTC	1 cut(s)	219
FaeI	CATG	2 cut(s)	329, 401
FaiI	YATR	4 cut(s)	315, 327, 333, 399
FatI	CATG	2 cut(s)	325, 397
FauI	CCCGC	1 cut(s)	379
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	1 cut(s)	156
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	2 cut(s)	191, 222
GluI	GCNGC	1 cut(s)	156
GsaI	CCCAGC	1 cut(s)	351
GsuI	CTGGAG	2 cut(s)	51, 221
HaeIII	GGCC	3 cut(s)	272, 374, 403
HapII	CCGG	1 cut(s)	232
HgaI	GACGC	1 cut(s)	236
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	2 cut(s)	329, 401
HinfI	GANTC	1 cut(s)	113
HpaII	CCGG	1 cut(s)	232
Hpy188I	TCNGA	3 cut(s)	80, 94, 265
Hpy188III	TCNNGA	3 cut(s)	52, 222, 242
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	3 cut(s)	261, 312, 370
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	2 cut(s)	42, 158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	169
HpyF3I	CTNAG	3 cut(s)	99, 213, 407
HpySE526I	ACGT	1 cut(s)	21
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	2 cut(s)	329, 401
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	1 cut(s)	337
LmnI	GCTCC	1 cut(s)	327
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	1 cut(s)	422
MaeI	CTAG	2 cut(s)	191, 222
MaeII	ACGT	1 cut(s)	21
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	324
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	2 cut(s)	73, 118
MluNI	TGGCCA	1 cut(s)	374
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	6 cut(s)	94, 103, 259, 262, 383, 414
Mox20I	TGGCCA	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	374
MseI	TTAA	1 cut(s)	255
Msp20I	TGGCCA	1 cut(s)	374
MspI	CCGG	1 cut(s)	232
MspR9I	CCNGG	4 cut(s)	30, 232, 233, 286
MvaI	CCWGG	2 cut(s)	30, 286
MvnI	CGCG	1 cut(s)	439
MwoI	GCNNNNNNNGC	1 cut(s)	169
NciI	CCSGG	2 cut(s)	232, 233
NcoI	CCATGG	2 cut(s)	325, 397
NdeII	GATC	1 cut(s)	337
NheI	GCTAGC	1 cut(s)	190
NlaIII	CATG	2 cut(s)	329, 401
NlaIV	GGNNCC	3 cut(s)	283, 323, 394
PceI	AGGCCT	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	157
Psp1406I	AACGTT	1 cut(s)	21
Psp6I	CCWGG	2 cut(s)	28, 284
PspFI	CCCAGC	1 cut(s)	347
PspGI	CCWGG	2 cut(s)	28, 284
PspN4I	GGNNCC	3 cut(s)	283, 323, 394
PspPI	GGNCC	1 cut(s)	401
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	1 cut(s)	337
Sau96I	GGNCC	1 cut(s)	401
ScrFI	CCNGG	4 cut(s)	30, 232, 233, 286
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	7 cut(s)	24, 31, 100, 157, 192, 366, 394
SfaNI	GCATC	1 cut(s)	422
SmaI	CCCGGG	1 cut(s)	233
SrfI	GCCCGGGC	1 cut(s)	233
Sse9I	AATT	2 cut(s)	73, 118
SseBI	AGGCCT	1 cut(s)	272
SsiI	CCGC	2 cut(s)	5, 386
SspMI	CTAG	2 cut(s)	191, 222
StuI	AGGCCT	1 cut(s)	272
StyD4I	CCNGG	4 cut(s)	28, 230, 231, 284
StyI	CCWWGG	2 cut(s)	325, 397
TaaI	ACNGT	3 cut(s)	261, 312, 370
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	2 cut(s)	116, 241
TaqII	GACCGA	1 cut(s)	221
TasI	AATT	2 cut(s)	73, 118
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	4 cut(s)	19, 204, 375, 382
TseI	GCWGC	1 cut(s)	155
TspDTI	ATGAA	1 cut(s)	318
TspMI	CCCGGG	1 cut(s)	231
TspRI	CASTG	4 cut(s)	19, 204, 375, 382
XapI	RAATTY	2 cut(s)	73, 118
XbaI	TCTAGA	1 cut(s)	221
XmaI	CCCGGG	1 cut(s)	231
XspI	CTAG	2 cut(s)	191, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.