Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0019391

Physical Location & Seq

Genomic Coordinates Forward (+)

9079499 .. 9079848

Gene Structure 350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG111200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGCGGATTTCGGTGGAAACGCAGAACCTGGAGAAGTTTGCAACTTCTTCAGGAAGCCAACAACAAAGAGAAATTTCAGAAAGCATACTTCTGAAGCTGAGGACGATGAGGAATCAAATTCTGGGAGTGCGGTATTACCAAGTCAAAGAAAAGCTGCAAAGACTGATGGCAAGTTGTTTTTTTCTAGTGGACCCTCTACGAGCTCTGCATCTGATAATGGGAAAGTAATCCTTGAGTTTAAGTCTTCAAAAGAAATCCGAGTAACACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016074 GO:0032991 GO:0034247 GO:0034470 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-CCCH

Protein Analysis

90

Amino Acids

9.8

Weight (kDa)

8.85

Isoelectric Point (pI)

32.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019391)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0461311
rosa_laevigata	RLG00000024942
rosa_multiflora	Rmu_ssc0000326.1_g000003
rosa_roxburghii	Rroxscaffold_6G00418420 Rroxscaffold_6G00418710
rosa_samantha	Rh3AG107100 Rh3BG111200 Rh3CG113000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 131
AcsI	RAATTY	2 cut(s)	73, 118
AcuI	CTGAAG	2 cut(s)	34, 114
AgsI	TTSAA	1 cut(s)	249
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	3 cut(s)	98, 155, 204
AluI	AGCT	3 cut(s)	98, 155, 204
Alw21I	GWGCWC	1 cut(s)	206
AlwNI	CAGNNNCTG	1 cut(s)	29
ApeKI	GCWGC	1 cut(s)	155
ApoI	RAATTY	2 cut(s)	73, 118
AspS9I	GGNCC	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	206
BbvCI	CCTCAGC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	1 cut(s)	161
BciT130I	CCWGG	1 cut(s)	30
BfaI	CTAG	1 cut(s)	186
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
Bme1390I	CCNGG	1 cut(s)	30
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	218
BpiI	GAAGAC	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	51
Bpu10I	CCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	254
BseBI	CCWGG	1 cut(s)	30
BseMII	CTCAG	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	206
BspACI	CCGC	2 cut(s)	5, 131
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	99
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	142
BstV2I	GAAGAC	1 cut(s)	237
CaiI	CAGNNNCTG	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	191
CviJI	RGCY	4 cut(s)	58, 98, 155, 204
CviKI_1	RGCY	4 cut(s)	58, 98, 155, 204
DdeI	CTNAG	1 cut(s)	99
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	204
Eco57I	CTGAAG	2 cut(s)	34, 114
EcoICRI	GAGCTC	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	206
FaiI	YATR	1 cut(s)	87
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
Fnu4HI	GCNGC	1 cut(s)	156
FriOI	GRGCYC	1 cut(s)	206
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	1 cut(s)	186
GluI	GCNGC	1 cut(s)	156
GsuI	CTGGAG	1 cut(s)	51
HinfI	GANTC	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188I	TCNGA	4 cut(s)	80, 94, 214, 260
Hpy188III	TCNNGA	1 cut(s)	52
Hpy8I	GTNNAC	1 cut(s)	191
HpyCH4V	TGCA	3 cut(s)	42, 158, 209
HpyF3I	CTNAG	1 cut(s)	99
LpnPI	CCDG	4 cut(s)	15, 37, 42, 108
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	1 cut(s)	218
MaeI	CTAG	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	262
MboII	GAAGA	2 cut(s)	40, 237
MhlI	GDGCHC	1 cut(s)	206
MluCI	AATT	2 cut(s)	73, 118
MnlI	CCTC	3 cut(s)	94, 103, 205
MseI	TTAA	1 cut(s)	240
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
NlaIV	GGNNCC	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	157
Psp124BI	GAGCTC	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	1 cut(s)	191
PstNI	CAGNNNCTG	1 cut(s)	29
SacI	GAGCTC	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	1 cut(s)	156
Sau96I	GGNCC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	206
SetI	ASST	4 cut(s)	31, 100, 157, 206
SfaNI	GCATC	1 cut(s)	218
SgeI	CNNG	9 cut(s)	41, 42, 64, 135, 153, 184, 198, 213, 245
SinI	GGWCC	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	2 cut(s)	73, 118
SsiI	CCGC	2 cut(s)	5, 131
SspMI	CTAG	1 cut(s)	186
SstI	GAGCTC	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	28
TasI	AATT	2 cut(s)	73, 118
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TseI	GCWGC	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	2 cut(s)	73, 118
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.