Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019396

Physical Location & Seq

Genomic Coordinates Forward (+)

11064828 .. 11065931

Gene Structure 1104 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43005

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGATGCTACATGGGAATTTTTTTTTCCAAATGTCTGGTGTTTTCACCATACCTGCCAAATATGTATTGCAGCGGTGGACAAATACTGCTATGAGCAGGCATGCCATTGGCAAAAAATTGGATGAGGTACAATCTAAGGTCCGTCGTTACAATGATTTATGTCGACGAGCCATAATATTGGGTGAAGAAGGGTCACTTTCTCAGGAGAGTTATGATGTAGCATTATGTGCCATAAAAGAAGCTTTAAAGCAATGCACGAGTTTGAACACTTCTGTTGAAAGCAATGCAAAACCTAATGACTCGGCAATAGATGGTATTTGTGGTATTGAAGTGAGTCAGTGTGGTATGACATCTGATGACAAGATTTTTGGTCTGAAAGTGAGTACTGCTAGCAAGACTCCTAGGAGAGTTGGGACTGGGAAAGTGGTGGCAAGGCATGGGAAAGGAAAGGTACCTCAGCCGGAAGGTATGAGAGTTGGAACACAAGACCAGTTTCCCCAAATGCAAGTTTGTTCTGAGACAAGGCCGCCTATGCTGATGCAGCTACATAATGTGGTGCCTCCGCAGTTGCATAATATGGTGCCATCAATGTTTCAAAATGTCTCACCGGCACAGTTCCATAATGGCTTGTTCGACACCTGTGCAGGAGAATCGTCTCCCTCAGTAACTTGGAACTTTTCTTCCTCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

230

Amino Acids

25.33

Weight (kDa)

8.86

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019396)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0463751
rosa_multiflora	Rmu_sc0001918.1_g000013 Rmu_sc0002601.1_g000005
rosa_roxburghii	Rroxscaffold_5G00374480
rosa_samantha	Rh1BG413600 Rh3AG124400 Rh3BG129000 Rh3CG131300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	61
Acc65I	GGTACC	1 cut(s)	451
AccB1I	GGYRCC	3 cut(s)	451, 556, 580
AccI	GTMKAC	1 cut(s)	163
AciI	CCGC	3 cut(s)	73, 527, 563
AcsI	RAATTY	1 cut(s)	16
AfaI	GTAC	3 cut(s)	129, 385, 453
AgsI	TTSAA	4 cut(s)	265, 278, 329, 596
AloI	GAACNNNNNNTCC	1 cut(s)	665
AluBI	AGCT	2 cut(s)	242, 544
AluI	AGCT	2 cut(s)	242, 544
Alw26I	GTCTC	3 cut(s)	512, 607, 660
AoxI	GGCC	1 cut(s)	524
ApeKI	GCWGC	2 cut(s)	70, 541
ApoI	RAATTY	1 cut(s)	16
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
Asp718I	GGTACC	1 cut(s)	451
AspA2I	CCTAGG	1 cut(s)	401
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	3 cut(s)	37, 194, 597
AsuNHI	GCTAGC	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	139
AvrII	CCTAGG	1 cut(s)	401
BanI	GGYRCC	3 cut(s)	451, 556, 580
BauI	CACGAG	1 cut(s)	256
BbvCI	CCTCAGC	1 cut(s)	456
BbvI	GCAGC	2 cut(s)	82, 553
BccI	CCATC	2 cut(s)	305, 592
BcgI	CGANNNNNNTGC	4 cut(s)	623, 633, 657, 667
BcoDI	GTCTC	3 cut(s)	512, 607, 660
BfaI	CTAG	2 cut(s)	390, 402
BfuAI	ACCTGC	1 cut(s)	61
BisI	GCNGC	3 cut(s)	71, 527, 542
BlnI	CCTAGG	1 cut(s)	401
BlsI	GCNGC	3 cut(s)	72, 528, 543
BmcAI	AGTACT	1 cut(s)	385
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	3 cut(s)	453, 558, 582
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	1 cut(s)	528
BmtI	GCTAGC	1 cut(s)	393
BmuI	ACTGGG	1 cut(s)	426
Bpu10I	CCTNAGC	1 cut(s)	456
BsaJI	CCNNGG	1 cut(s)	401
Bse118I	RCCGGY	1 cut(s)	607
Bse1I	ACTGG	2 cut(s)	421, 490
Bse3DI	GCAATG	2 cut(s)	257, 289
BseDI	CCNNGG	1 cut(s)	401
BseGI	GGATG	1 cut(s)	127
BseMI	GCAATG	2 cut(s)	257, 289
BseMII	CTCAG	4 cut(s)	215, 470, 507, 675
BseNI	ACTGG	2 cut(s)	421, 490
BseXI	GCAGC	2 cut(s)	82, 553
BsgI	GTGCAG	1 cut(s)	663
BshFI	GGCC	1 cut(s)	526
BshNI	GGYRCC	3 cut(s)	451, 556, 580
BsiSI	CCGG	2 cut(s)	461, 608
BslFI	GGGAC	1 cut(s)	427
BsmAI	GTCTC	3 cut(s)	512, 607, 660
BsmBI	CGTCTC	1 cut(s)	660
BsmFI	GGGAC	1 cut(s)	427
BsnI	GGCC	1 cut(s)	526
BspACI	CCGC	3 cut(s)	73, 527, 563
BspANI	GGCC	1 cut(s)	526
BspCNI	CTCAG	4 cut(s)	214, 469, 508, 674
BspLI	GGNNCC	3 cut(s)	453, 558, 582
BspMI	ACCTGC	1 cut(s)	61
BspOI	GCTAGC	1 cut(s)	393
BspT107I	GGYRCC	3 cut(s)	451, 556, 580
BsrDI	GCAATG	2 cut(s)	257, 289
BsrFI	RCCGGY	1 cut(s)	607
BsrI	ACTGG	2 cut(s)	421, 490
BssAI	RCCGGY	1 cut(s)	607
BssECI	CCNNGG	1 cut(s)	401
BssSI	CACGAG	1 cut(s)	256
BssT1I	CCWWGG	1 cut(s)	401
Bst2BI	CACGAG	1 cut(s)	256
Bst4CI	ACNGT	1 cut(s)	615
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstC8I	GCNNGC	3 cut(s)	98, 102, 391
BstDEI	CTNAG	5 cut(s)	135, 201, 456, 516, 661
BstF5I	GGATG	1 cut(s)	127
BstMAI	GTCTC	3 cut(s)	512, 607, 660
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 532, 541
BstNSI	RCATGY	1 cut(s)	104
BstV1I	GCAGC	2 cut(s)	82, 553
BstXI	CCANNNNNNTGG	2 cut(s)	35, 178
BsuRI	GGCC	1 cut(s)	526
BtsCI	GGATG	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	344
BveI	ACCTGC	1 cut(s)	61
Cac8I	GCNNGC	3 cut(s)	98, 102, 391
Cfr10I	RCCGGY	1 cut(s)	607
Cfr13I	GGNCC	1 cut(s)	139
Csp6I	GTAC	3 cut(s)	128, 384, 452
CviAII	CATG	3 cut(s)	11, 101, 437
CviJI	RGCY	6 cut(s)	170, 242, 460, 526, 544, 627
CviKI_1	RGCY	6 cut(s)	170, 242, 460, 526, 544, 627
CviQI	GTAC	3 cut(s)	128, 384, 452
DdeI	CTNAG	5 cut(s)	135, 201, 456, 516, 661
DraI	TTTAAA	1 cut(s)	246
Eco130I	CCWWGG	1 cut(s)	401
Eco47I	GGWCC	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	401
ErhI	CCWWGG	1 cut(s)	401
Esp3I	CGTCTC	1 cut(s)	660
FaeI	CATG	3 cut(s)	14, 104, 440
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FaqI	GGGAC	1 cut(s)	427
FatI	CATG	3 cut(s)	10, 100, 436
FblI	GTMKAC	1 cut(s)	163
Fnu4HI	GCNGC	3 cut(s)	71, 527, 542
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	3 cut(s)	71, 527, 542
FspBI	CTAG	2 cut(s)	390, 402
GluI	GCNGC	3 cut(s)	71, 527, 542
HaeIII	GGCC	1 cut(s)	526
HapII	CCGG	2 cut(s)	461, 608
Hin1II	CATG	3 cut(s)	14, 104, 440
HincII	GTYRAC	1 cut(s)	164
HindII	GTYRAC	1 cut(s)	164
HindIII	AAGCTT	1 cut(s)	240
HinfI	GANTC	4 cut(s)	299, 334, 397, 650
HpaII	CCGG	2 cut(s)	461, 608
HphI	GGTGA	3 cut(s)	37, 194, 597
Hpy166II	GTNNAC	2 cut(s)	78, 164
Hpy188I	TCNGA	3 cut(s)	355, 375, 517
Hpy188III	TCNNGA	1 cut(s)	203
Hpy8I	GTNNAC	2 cut(s)	78, 164
Hpy99I	CGWCG	2 cut(s)	147, 168
HpyAV	CCTTC	2 cut(s)	182, 458
HpyCH4III	ACNGT	1 cut(s)	615
HpyCH4V	TGCA	7 cut(s)	70, 255, 287, 505, 541, 571, 644
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 532, 541
HpyF3I	CTNAG	5 cut(s)	135, 201, 456, 516, 661
Hsp92II	CATG	3 cut(s)	14, 104, 440
KpnI	GGTACC	1 cut(s)	455
Lsp1109I	GCAGC	2 cut(s)	82, 553
LweI	GCATC	1 cut(s)	528
MaeI	CTAG	2 cut(s)	390, 402
MaeIII	GTNAC	3 cut(s)	146, 192, 664
MboII	GAAGA	2 cut(s)	197, 672
MluCI	AATT	2 cut(s)	16, 116
MlyI	GAGTC	3 cut(s)	293, 343, 391
MmeI	TCCRAC	1 cut(s)	457
MnlI	CCTC	4 cut(s)	118, 465, 570, 670
MseI	TTAA	2 cut(s)	245, 691
MspA1I	CMGCKG	1 cut(s)	73
MspI	CCGG	2 cut(s)	461, 608
MwoI	GCNNNNNNNGC	3 cut(s)	227, 532, 541
NheI	GCTAGC	1 cut(s)	389
NlaIII	CATG	3 cut(s)	14, 104, 440
NlaIV	GGNNCC	3 cut(s)	453, 558, 582
NmeAIII	GCCGAG	1 cut(s)	281
NmuCI	GTSAC	1 cut(s)	192
NspI	RCATGY	1 cut(s)	104
PaeI	GCATGC	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	650
PkrI	GCNGC	3 cut(s)	72, 528, 543
PleI	GAGTC	3 cut(s)	293, 342, 391
PpsI	GAGTC	3 cut(s)	293, 342, 391
PspN4I	GGNNCC	3 cut(s)	453, 558, 582
PspPI	GGNCC	1 cut(s)	139
RsaI	GTAC	3 cut(s)	129, 385, 453
RsaNI	GTAC	3 cut(s)	128, 384, 452
SalI	GTCGAC	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	245, 691
SatI	GCNGC	3 cut(s)	71, 527, 542
Sau96I	GGNCC	1 cut(s)	139
ScaI	AGTACT	1 cut(s)	385
SchI	GAGTC	3 cut(s)	293, 343, 391
SfaNI	GCATC	1 cut(s)	528
SinI	GGWCC	1 cut(s)	139
SphI	GCATGC	1 cut(s)	104
Sse9I	AATT	2 cut(s)	16, 116
SsiI	CCGC	3 cut(s)	73, 527, 563
SspI	AATATT	1 cut(s)	177
SspMI	CTAG	2 cut(s)	390, 402
StyI	CCWWGG	1 cut(s)	401
TaaI	ACNGT	1 cut(s)	615
TaqI	TCGA	2 cut(s)	163, 633
TasI	AATT	2 cut(s)	16, 116
TatI	WGTACW	1 cut(s)	383
TauI	GCSGC	1 cut(s)	529
TfiI	GAWTC	1 cut(s)	650
Tru1I	TTAA	2 cut(s)	245, 691
Tru9I	TTAA	2 cut(s)	245, 691
TscAI	CASTG	1 cut(s)	344
TseFI	GTSAC	1 cut(s)	192
TseI	GCWGC	2 cut(s)	70, 541
Tsp45I	GTSAC	1 cut(s)	192
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	1 cut(s)	344
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	1 cut(s)	16
XceI	RCATGY	1 cut(s)	104
XmaJI	CCTAGG	1 cut(s)	401
XmiI	GTMKAC	1 cut(s)	163
XspI	CTAG	2 cut(s)	390, 402
ZrmI	AGTACT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.