Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001918.1

Orthogroup ID

OG0019396

Physical Location & Seq

Genomic Coordinates Reverse (-)

59469 .. 60080

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001918.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgtctggtgttttcaccatacctgccaaatatgtattgcagcggtggacaaatactgctatgagcaggcatgccattggcgaaaaattggatgaggtacaatctaaggtccgtcgttacaatgatttatgtcgacgagccataatattgggtgaagaagggtcactttctcaggagagttatgatgtagcattatgtgccataaaagaagccttaaagcaatgcacgagtttgaacacctctgttgaaagcaatgcaaaacctaatgactcggcagttgatggtatttgtggtattgaagtgagtcagtgtggtatgacatctgatgacaagatttttggtccgaaagtgagtactgctagcaagactcctaggagagttgggactgggaaagtggtggcaaggcatgggaaaggaaaggtacctcagccggaaggtatgagagttggcacacaagaccagtttccccaaatggtatgtcatgctgcctcccatcttaattctgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

169

Amino Acids

18.3

Weight (kDa)

8.94

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019396)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0463751
rosa_multiflora	Rmu_sc0001918.1_g000013 Rmu_sc0002601.1_g000005
rosa_roxburghii	Rroxscaffold_5G00374480
rosa_samantha	Rh1BG413600 Rh3AG124400 Rh3BG129000 Rh3CG131300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	31
Acc65I	GGTACC	1 cut(s)	421
AccB1I	GGYRCC	1 cut(s)	421
AccI	GTMKAC	1 cut(s)	133
AciI	CCGC	1 cut(s)	43
AfaI	GTAC	3 cut(s)	99, 355, 423
AgsI	TTSAA	3 cut(s)	235, 248, 299
ApeKI	GCWGC	2 cut(s)	40, 485
ArsI	GACNNNNNNTTYG	4 cut(s)	320, 352, 463, 495
Asp718I	GGTACC	1 cut(s)	421
AspA2I	CCTAGG	1 cut(s)	371
AspS9I	GGNCC	2 cut(s)	109, 341
AsuHPI	GGTGA	2 cut(s)	7, 164
AsuNHI	GCTAGC	1 cut(s)	359
AvaII	GGWCC	2 cut(s)	109, 341
AvrII	CCTAGG	1 cut(s)	371
BanI	GGYRCC	1 cut(s)	421
BauI	CACGAG	1 cut(s)	226
BbvCI	CCTCAGC	1 cut(s)	426
BbvI	GCAGC	2 cut(s)	52, 472
BccI	CCATC	2 cut(s)	275, 501
BfaI	CTAG	2 cut(s)	360, 372
BfuAI	ACCTGC	1 cut(s)	31
BisI	GCNGC	2 cut(s)	41, 486
BlnI	CCTAGG	1 cut(s)	371
BlsI	GCNGC	2 cut(s)	42, 487
BmcAI	AGTACT	1 cut(s)	355
Bme18I	GGWCC	2 cut(s)	109, 341
BmgT120I	GGNCC	2 cut(s)	109, 341
BmiI	GGNNCC	1 cut(s)	423
BmrI	ACTGGG	1 cut(s)	396
BmtI	GCTAGC	1 cut(s)	363
BmuI	ACTGGG	1 cut(s)	396
Bpu10I	CCTNAGC	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	371
Bse1I	ACTGG	2 cut(s)	391, 460
Bse3DI	GCAATG	2 cut(s)	227, 259
BseDI	CCNNGG	1 cut(s)	371
BseGI	GGATG	1 cut(s)	97
BseMI	GCAATG	2 cut(s)	227, 259
BseMII	CTCAG	2 cut(s)	185, 440
BseNI	ACTGG	2 cut(s)	391, 460
BseXI	GCAGC	2 cut(s)	52, 472
BshNI	GGYRCC	1 cut(s)	421
BsiSI	CCGG	1 cut(s)	431
BslFI	GGGAC	1 cut(s)	397
BsmFI	GGGAC	1 cut(s)	397
BspACI	CCGC	1 cut(s)	43
BspCNI	CTCAG	2 cut(s)	184, 439
BspLI	GGNNCC	1 cut(s)	423
BspMI	ACCTGC	1 cut(s)	31
BspOI	GCTAGC	1 cut(s)	363
BspT107I	GGYRCC	1 cut(s)	421
BsrDI	GCAATG	2 cut(s)	227, 259
BsrI	ACTGG	2 cut(s)	391, 460
BssECI	CCNNGG	1 cut(s)	371
BssSI	CACGAG	1 cut(s)	226
BssT1I	CCWWGG	1 cut(s)	371
Bst2BI	CACGAG	1 cut(s)	226
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstC8I	GCNNGC	3 cut(s)	68, 72, 361
BstDEI	CTNAG	3 cut(s)	105, 171, 426
BstF5I	GGATG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNSI	RCATGY	1 cut(s)	74
BstV1I	GCAGC	2 cut(s)	52, 472
BstXI	CCANNNNNNTGG	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	314
BveI	ACCTGC	1 cut(s)	31
Cac8I	GCNNGC	3 cut(s)	68, 72, 361
Cfr13I	GGNCC	2 cut(s)	109, 341
Csp6I	GTAC	3 cut(s)	98, 354, 422
CviAII	CATG	3 cut(s)	71, 407, 482
CviJI	RGCY	3 cut(s)	140, 212, 430
CviKI_1	RGCY	3 cut(s)	140, 212, 430
CviQI	GTAC	3 cut(s)	98, 354, 422
DdeI	CTNAG	3 cut(s)	105, 171, 426
Eco130I	CCWWGG	1 cut(s)	371
Eco47I	GGWCC	2 cut(s)	109, 341
EcoT14I	CCWWGG	1 cut(s)	371
ErhI	CCWWGG	1 cut(s)	371
FaeI	CATG	3 cut(s)	74, 410, 485
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	3 cut(s)	70, 406, 481
FblI	GTMKAC	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	41, 486
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	2 cut(s)	41, 486
FspBI	CTAG	2 cut(s)	360, 372
GluI	GCNGC	2 cut(s)	41, 486
HapII	CCGG	1 cut(s)	431
Hin1II	CATG	3 cut(s)	74, 410, 485
HincII	GTYRAC	1 cut(s)	134
HindII	GTYRAC	1 cut(s)	134
HinfI	GANTC	3 cut(s)	269, 304, 367
HpaII	CCGG	1 cut(s)	431
HphI	GGTGA	2 cut(s)	7, 164
Hpy166II	GTNNAC	2 cut(s)	48, 134
Hpy188I	TCNGA	2 cut(s)	325, 345
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	2 cut(s)	48, 134
Hpy99I	CGWCG	2 cut(s)	117, 138
HpyAV	CCTTC	2 cut(s)	152, 428
HpyCH4V	TGCA	3 cut(s)	40, 225, 257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	3 cut(s)	105, 171, 426
Hsp92II	CATG	3 cut(s)	74, 410, 485
KpnI	GGTACC	1 cut(s)	425
LpnPI	CCDG	6 cut(s)	36, 52, 158, 372, 444, 473
Lsp1109I	GCAGC	2 cut(s)	52, 472
MaeI	CTAG	2 cut(s)	360, 372
MaeIII	GTNAC	2 cut(s)	116, 162
MboII	GAAGA	1 cut(s)	167
MluCI	AATT	2 cut(s)	86, 499
MlyI	GAGTC	3 cut(s)	263, 313, 361
MnlI	CCTC	4 cut(s)	88, 250, 435, 499
MseI	TTAA	2 cut(s)	215, 498
MspA1I	CMGCKG	1 cut(s)	43
MspI	CCGG	1 cut(s)	431
MwoI	GCNNNNNNNGC	1 cut(s)	197
NheI	GCTAGC	1 cut(s)	359
NlaIII	CATG	3 cut(s)	74, 410, 485
NlaIV	GGNNCC	1 cut(s)	423
NmeAIII	GCCGAG	1 cut(s)	251
NmuCI	GTSAC	1 cut(s)	162
NspI	RCATGY	1 cut(s)	74
PaeI	GCATGC	1 cut(s)	74
PkrI	GCNGC	2 cut(s)	42, 487
PleI	GAGTC	3 cut(s)	263, 312, 361
PpsI	GAGTC	3 cut(s)	263, 312, 361
PspN4I	GGNNCC	1 cut(s)	423
PspPI	GGNCC	2 cut(s)	109, 341
RsaI	GTAC	3 cut(s)	99, 355, 423
RsaNI	GTAC	3 cut(s)	98, 354, 422
SalI	GTCGAC	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	215, 498
SatI	GCNGC	2 cut(s)	41, 486
Sau96I	GGNCC	2 cut(s)	109, 341
ScaI	AGTACT	1 cut(s)	355
SchI	GAGTC	3 cut(s)	263, 313, 361
SetI	ASST	8 cut(s)	25, 99, 111, 242, 265, 423, 427, 439
SinI	GGWCC	2 cut(s)	109, 341
SphI	GCATGC	1 cut(s)	74
Sse9I	AATT	2 cut(s)	86, 499
SsiI	CCGC	1 cut(s)	43
SspI	AATATT	1 cut(s)	147
SspMI	CTAG	2 cut(s)	360, 372
StyI	CCWWGG	1 cut(s)	371
TaqI	TCGA	1 cut(s)	133
TasI	AATT	2 cut(s)	86, 499
TatI	WGTACW	1 cut(s)	353
Tru1I	TTAA	2 cut(s)	215, 498
Tru9I	TTAA	2 cut(s)	215, 498
TscAI	CASTG	1 cut(s)	314
TseFI	GTSAC	1 cut(s)	162
TseI	GCWGC	2 cut(s)	40, 485
Tsp45I	GTSAC	1 cut(s)	162
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	314
VpaK11BI	GGWCC	2 cut(s)	109, 341
XceI	RCATGY	1 cut(s)	74
XmaJI	CCTAGG	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	133
XspI	CTAG	2 cut(s)	360, 372
ZrmI	AGTACT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.