Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0019396

Physical Location & Seq

Genomic Coordinates Forward (+)

53586470 .. 53587045

Gene Structure 576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG413600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGTCTGGTGTTTTCACCATACCTGCCAAATATGTATTGCAGCGGTGGACAAATACTGCTATAAGCAGGCATGCCATTGGCGAAAAATTGGATGAGGTACAATCTAAGGTCCGTCGTTACAATGATTTATGTCGACGAGCCATAATATTGGGTGAAGAAGGGTCACTTTCTCAGGAGAGCTATGATGTAGCATTATGTGCCATAAAAGAAGCTTTAAAGCAATGCACGAGTTTGAACACCTCTGTTGAAAGCAATGCAAAACCTAATGACTCGGCAATAGATGGTATTTGTGGTATTGAAGTGAGTCAGTGTGGTATGACATCTGATGACAAGATTTTTGGTCTGAAAGTGAGTACTGCTAGCAAGACTCCTAGGAGAGTTGGGACTAGGAAAGTGGTGGCAAGGCATGGGAAAGGAAAGGTACCTCAGCCGGAAGGTATGAGAGTTGGAACACAAGACCAGTTTCCCCAAATG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

158

Amino Acids

17.29

Weight (kDa)

9.18

Isoelectric Point (pI)

44.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019396)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0463751
rosa_multiflora	Rmu_sc0001918.1_g000013 Rmu_sc0002601.1_g000005
rosa_roxburghii	Rroxscaffold_5G00374480
rosa_samantha	Rh1BG413600 Rh3AG124400 Rh3BG129000 Rh3CG131300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	31
Acc65I	GGTACC	1 cut(s)	421
AccB1I	GGYRCC	1 cut(s)	421
AccI	GTMKAC	1 cut(s)	133
AciI	CCGC	1 cut(s)	43
AfaI	GTAC	3 cut(s)	99, 355, 423
AgsI	TTSAA	3 cut(s)	235, 248, 299
AluBI	AGCT	2 cut(s)	180, 212
AluI	AGCT	2 cut(s)	180, 212
ApeKI	GCWGC	1 cut(s)	40
ArsI	GACNNNNNNTTYG	2 cut(s)	320, 352
Asp718I	GGTACC	1 cut(s)	421
AspA2I	CCTAGG	1 cut(s)	371
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	2 cut(s)	7, 164
AsuNHI	GCTAGC	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	109
AvrII	CCTAGG	1 cut(s)	371
BanI	GGYRCC	1 cut(s)	421
BauI	CACGAG	1 cut(s)	226
BbvCI	CCTCAGC	1 cut(s)	426
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	1 cut(s)	275
BfaI	CTAG	3 cut(s)	360, 372, 387
BfuAI	ACCTGC	1 cut(s)	31
BisI	GCNGC	1 cut(s)	41
BlnI	CCTAGG	1 cut(s)	371
BlsI	GCNGC	1 cut(s)	42
BmcAI	AGTACT	1 cut(s)	355
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	423
BmtI	GCTAGC	1 cut(s)	363
Bpu10I	CCTNAGC	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	371
Bse1I	ACTGG	1 cut(s)	460
Bse3DI	GCAATG	2 cut(s)	227, 259
BseDI	CCNNGG	1 cut(s)	371
BseGI	GGATG	1 cut(s)	97
BseMI	GCAATG	2 cut(s)	227, 259
BseMII	CTCAG	2 cut(s)	185, 440
BseNI	ACTGG	1 cut(s)	460
BseXI	GCAGC	1 cut(s)	52
BshNI	GGYRCC	1 cut(s)	421
BsiSI	CCGG	1 cut(s)	431
BslFI	GGGAC	1 cut(s)	397
BsmFI	GGGAC	1 cut(s)	397
BspACI	CCGC	1 cut(s)	43
BspCNI	CTCAG	2 cut(s)	184, 439
BspLI	GGNNCC	1 cut(s)	423
BspMI	ACCTGC	1 cut(s)	31
BspOI	GCTAGC	1 cut(s)	363
BspT107I	GGYRCC	1 cut(s)	421
BsrDI	GCAATG	2 cut(s)	227, 259
BsrI	ACTGG	1 cut(s)	460
BssECI	CCNNGG	1 cut(s)	371
BssSI	CACGAG	1 cut(s)	226
BssT1I	CCWWGG	1 cut(s)	371
Bst2BI	CACGAG	1 cut(s)	226
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstC8I	GCNNGC	3 cut(s)	68, 72, 361
BstDEI	CTNAG	3 cut(s)	105, 171, 426
BstF5I	GGATG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNSI	RCATGY	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	52
BstXI	CCANNNNNNTGG	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	314
BveI	ACCTGC	1 cut(s)	31
Cac8I	GCNNGC	3 cut(s)	68, 72, 361
Cfr13I	GGNCC	1 cut(s)	109
Csp6I	GTAC	3 cut(s)	98, 354, 422
CviAII	CATG	2 cut(s)	71, 407
CviJI	RGCY	4 cut(s)	140, 180, 212, 430
CviKI_1	RGCY	4 cut(s)	140, 180, 212, 430
CviQI	GTAC	3 cut(s)	98, 354, 422
DdeI	CTNAG	3 cut(s)	105, 171, 426
DraI	TTTAAA	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	371
Eco47I	GGWCC	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	371
ErhI	CCWWGG	1 cut(s)	371
FaeI	CATG	2 cut(s)	74, 410
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	2 cut(s)	70, 406
FblI	GTMKAC	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	41
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	1 cut(s)	41
FspBI	CTAG	3 cut(s)	360, 372, 387
GluI	GCNGC	1 cut(s)	41
HapII	CCGG	1 cut(s)	431
Hin1II	CATG	2 cut(s)	74, 410
HincII	GTYRAC	1 cut(s)	134
HindII	GTYRAC	1 cut(s)	134
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	3 cut(s)	269, 304, 367
HpaII	CCGG	1 cut(s)	431
HphI	GGTGA	2 cut(s)	7, 164
Hpy166II	GTNNAC	2 cut(s)	48, 134
Hpy188I	TCNGA	2 cut(s)	325, 345
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	2 cut(s)	48, 134
Hpy99I	CGWCG	2 cut(s)	117, 138
HpyAV	CCTTC	2 cut(s)	152, 428
HpyCH4V	TGCA	3 cut(s)	40, 225, 257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	3 cut(s)	105, 171, 426
Hsp92II	CATG	2 cut(s)	74, 410
KpnI	GGTACC	1 cut(s)	425
LpnPI	CCDG	4 cut(s)	36, 52, 158, 444
Lsp1109I	GCAGC	1 cut(s)	52
MaeI	CTAG	3 cut(s)	360, 372, 387
MaeIII	GTNAC	2 cut(s)	116, 162
MboII	GAAGA	1 cut(s)	167
MluCI	AATT	1 cut(s)	86
MlyI	GAGTC	3 cut(s)	263, 313, 361
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	3 cut(s)	88, 250, 435
MseI	TTAA	1 cut(s)	215
MspA1I	CMGCKG	1 cut(s)	43
MspI	CCGG	1 cut(s)	431
MwoI	GCNNNNNNNGC	1 cut(s)	197
NheI	GCTAGC	1 cut(s)	359
NlaIII	CATG	2 cut(s)	74, 410
NlaIV	GGNNCC	1 cut(s)	423
NmeAIII	GCCGAG	1 cut(s)	251
NmuCI	GTSAC	1 cut(s)	162
NspI	RCATGY	1 cut(s)	74
PaeI	GCATGC	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	42
PleI	GAGTC	3 cut(s)	263, 312, 361
PpsI	GAGTC	3 cut(s)	263, 312, 361
PspN4I	GGNNCC	1 cut(s)	423
PspPI	GGNCC	1 cut(s)	109
RsaI	GTAC	3 cut(s)	99, 355, 423
RsaNI	GTAC	3 cut(s)	98, 354, 422
SalI	GTCGAC	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	215
SatI	GCNGC	1 cut(s)	41
Sau96I	GGNCC	1 cut(s)	109
ScaI	AGTACT	1 cut(s)	355
SchI	GAGTC	3 cut(s)	263, 313, 361
SinI	GGWCC	1 cut(s)	109
SphI	GCATGC	1 cut(s)	74
Sse9I	AATT	1 cut(s)	86
SsiI	CCGC	1 cut(s)	43
SspI	AATATT	1 cut(s)	147
SspMI	CTAG	3 cut(s)	360, 372, 387
StyI	CCWWGG	1 cut(s)	371
TaqI	TCGA	1 cut(s)	133
TasI	AATT	1 cut(s)	86
TatI	WGTACW	1 cut(s)	353
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TscAI	CASTG	1 cut(s)	314
TseFI	GTSAC	1 cut(s)	162
TseI	GCWGC	1 cut(s)	40
Tsp45I	GTSAC	1 cut(s)	162
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	109
XceI	RCATGY	1 cut(s)	74
XmaJI	CCTAGG	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	133
XspI	CTAG	3 cut(s)	360, 372, 387
ZrmI	AGTACT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.