Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0019396

Physical Location & Seq

Genomic Coordinates Forward (+)

10749760 .. 10751864

Gene Structure 2105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG124400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAGCAGGCATGCCATTGGCAAAAAATTGGATGAGGTACAATCTAAGGTCCGTCGTTACAATGATTTATGTCGACGAGCCATAATATTGGGTGAAGAAGGGTCACTTTCTCAGGAGAGTTATGATGTAGCATTATGTGCCATAAAAGAAGCTTTAAAGCAATGCACGAGTTTGAACACTTCTGTTGAAAGCAATGCAAAACCTAATGACTCGGCAATAGATGGTATTTGTGGTATTGAAGTGAGTCAGTGTGGTATGACATCTGATGACAAGATTTTTGGTCTGAAAGTGAGTACTGCTAGCAAGACTCCTAGGAGAGTTGGGACTGGGAAAGTGGTGGCAAGGCATGGGAAAGGAAAGGTACCTCAGCCGGAAGGTATGAGAGTTGGAACACAAGACCAGTTTCCCCAAATGCAAGTTTGTTCTGAGACAAGGCCGCCTATGCTGATGCAGCTACATAATGTGGTGCCTCCGCAGTTGCATAATATGGTGCCATCAATGTTTCAAAATGTCTCACCGGCACAGTTCCATAATGGCTTGTTCGACACCTGTGCAGGAGAATCGTCTCCCTCAGTAACTTGGAACTTTTCTTCCTCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

200

Amino Acids

21.82

Weight (kDa)

8.48

Isoelectric Point (pI)

50.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019396)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0463751
rosa_multiflora	Rmu_sc0001918.1_g000013 Rmu_sc0002601.1_g000005
rosa_roxburghii	Rroxscaffold_5G00374480
rosa_samantha	Rh1BG413600 Rh3AG124400 Rh3BG129000 Rh3CG131300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	361
AccB1I	GGYRCC	3 cut(s)	361, 466, 490
AccI	GTMKAC	1 cut(s)	73
AciI	CCGC	2 cut(s)	437, 473
AfaI	GTAC	3 cut(s)	39, 295, 363
AgsI	TTSAA	4 cut(s)	175, 188, 239, 506
AloI	GAACNNNNNNTCC	1 cut(s)	575
AluBI	AGCT	2 cut(s)	152, 454
AluI	AGCT	2 cut(s)	152, 454
Alw26I	GTCTC	3 cut(s)	422, 517, 570
AoxI	GGCC	1 cut(s)	434
ApeKI	GCWGC	1 cut(s)	451
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
Asp718I	GGTACC	1 cut(s)	361
AspA2I	CCTAGG	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	2 cut(s)	104, 507
AsuNHI	GCTAGC	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	49
AvrII	CCTAGG	1 cut(s)	311
BanI	GGYRCC	3 cut(s)	361, 466, 490
BauI	CACGAG	1 cut(s)	166
BbvCI	CCTCAGC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	2 cut(s)	215, 502
BcgI	CGANNNNNNTGC	4 cut(s)	533, 543, 567, 577
BcoDI	GTCTC	3 cut(s)	422, 517, 570
BfaI	CTAG	2 cut(s)	300, 312
BisI	GCNGC	2 cut(s)	437, 452
BlnI	CCTAGG	1 cut(s)	311
BlsI	GCNGC	2 cut(s)	438, 453
BmcAI	AGTACT	1 cut(s)	295
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	3 cut(s)	363, 468, 492
BmrI	ACTGGG	1 cut(s)	336
BmsI	GCATC	1 cut(s)	438
BmtI	GCTAGC	1 cut(s)	303
BmuI	ACTGGG	1 cut(s)	336
Bpu10I	CCTNAGC	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	311
Bse118I	RCCGGY	1 cut(s)	517
Bse1I	ACTGG	2 cut(s)	331, 400
Bse3DI	GCAATG	2 cut(s)	167, 199
BseDI	CCNNGG	1 cut(s)	311
BseGI	GGATG	1 cut(s)	37
BseMI	GCAATG	2 cut(s)	167, 199
BseMII	CTCAG	4 cut(s)	125, 380, 417, 585
BseNI	ACTGG	2 cut(s)	331, 400
BseXI	GCAGC	1 cut(s)	463
BsgI	GTGCAG	1 cut(s)	573
BshFI	GGCC	1 cut(s)	436
BshNI	GGYRCC	3 cut(s)	361, 466, 490
BsiSI	CCGG	2 cut(s)	371, 518
BslFI	GGGAC	1 cut(s)	337
BsmAI	GTCTC	3 cut(s)	422, 517, 570
BsmBI	CGTCTC	1 cut(s)	570
BsmFI	GGGAC	1 cut(s)	337
BsnI	GGCC	1 cut(s)	436
BspACI	CCGC	2 cut(s)	437, 473
BspANI	GGCC	1 cut(s)	436
BspCNI	CTCAG	4 cut(s)	124, 379, 418, 584
BspLI	GGNNCC	3 cut(s)	363, 468, 492
BspOI	GCTAGC	1 cut(s)	303
BspT107I	GGYRCC	3 cut(s)	361, 466, 490
BsrDI	GCAATG	2 cut(s)	167, 199
BsrFI	RCCGGY	1 cut(s)	517
BsrI	ACTGG	2 cut(s)	331, 400
BssAI	RCCGGY	1 cut(s)	517
BssECI	CCNNGG	1 cut(s)	311
BssSI	CACGAG	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	311
Bst2BI	CACGAG	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	525
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstC8I	GCNNGC	3 cut(s)	8, 12, 301
BstDEI	CTNAG	5 cut(s)	45, 111, 366, 426, 571
BstF5I	GGATG	1 cut(s)	37
BstMAI	GTCTC	3 cut(s)	422, 517, 570
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 442, 451
BstNSI	RCATGY	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	463
BstXI	CCANNNNNNTGG	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	436
BtsCI	GGATG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	254
Cac8I	GCNNGC	3 cut(s)	8, 12, 301
Cfr10I	RCCGGY	1 cut(s)	517
Cfr13I	GGNCC	1 cut(s)	49
Csp6I	GTAC	3 cut(s)	38, 294, 362
CviAII	CATG	2 cut(s)	11, 347
CviJI	RGCY	6 cut(s)	80, 152, 370, 436, 454, 537
CviKI_1	RGCY	6 cut(s)	80, 152, 370, 436, 454, 537
CviQI	GTAC	3 cut(s)	38, 294, 362
DdeI	CTNAG	5 cut(s)	45, 111, 366, 426, 571
DraI	TTTAAA	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	311
Eco47I	GGWCC	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	311
ErhI	CCWWGG	1 cut(s)	311
Esp3I	CGTCTC	1 cut(s)	570
FaeI	CATG	2 cut(s)	14, 350
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	2 cut(s)	10, 346
FblI	GTMKAC	1 cut(s)	73
Fnu4HI	GCNGC	2 cut(s)	437, 452
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	2 cut(s)	437, 452
FspBI	CTAG	2 cut(s)	300, 312
GluI	GCNGC	2 cut(s)	437, 452
HaeIII	GGCC	1 cut(s)	436
HapII	CCGG	2 cut(s)	371, 518
Hin1II	CATG	2 cut(s)	14, 350
HincII	GTYRAC	1 cut(s)	74
HindII	GTYRAC	1 cut(s)	74
HindIII	AAGCTT	1 cut(s)	150
HinfI	GANTC	4 cut(s)	209, 244, 307, 560
HpaII	CCGG	2 cut(s)	371, 518
HphI	GGTGA	2 cut(s)	104, 507
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	3 cut(s)	265, 285, 427
Hpy188III	TCNNGA	1 cut(s)	113
Hpy8I	GTNNAC	1 cut(s)	74
Hpy99I	CGWCG	2 cut(s)	57, 78
HpyAV	CCTTC	2 cut(s)	92, 368
HpyCH4III	ACNGT	1 cut(s)	525
HpyCH4V	TGCA	6 cut(s)	165, 197, 415, 451, 481, 554
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 442, 451
HpyF3I	CTNAG	5 cut(s)	45, 111, 366, 426, 571
Hsp92II	CATG	2 cut(s)	14, 350
KpnI	GGTACC	1 cut(s)	365
LpnPI	CCDG	7 cut(s)	98, 312, 384, 413, 531, 540, 562
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	1 cut(s)	438
MaeI	CTAG	2 cut(s)	300, 312
MaeIII	GTNAC	3 cut(s)	56, 102, 574
MboII	GAAGA	2 cut(s)	107, 582
MluCI	AATT	1 cut(s)	26
MlyI	GAGTC	3 cut(s)	203, 253, 301
MmeI	TCCRAC	1 cut(s)	367
MnlI	CCTC	4 cut(s)	28, 375, 480, 580
MseI	TTAA	2 cut(s)	155, 601
MspI	CCGG	2 cut(s)	371, 518
MwoI	GCNNNNNNNGC	3 cut(s)	137, 442, 451
NheI	GCTAGC	1 cut(s)	299
NlaIII	CATG	2 cut(s)	14, 350
NlaIV	GGNNCC	3 cut(s)	363, 468, 492
NmeAIII	GCCGAG	1 cut(s)	191
NmuCI	GTSAC	1 cut(s)	102
NspI	RCATGY	1 cut(s)	14
PaeI	GCATGC	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	560
PkrI	GCNGC	2 cut(s)	438, 453
PleI	GAGTC	3 cut(s)	203, 252, 301
PpsI	GAGTC	3 cut(s)	203, 252, 301
PspN4I	GGNNCC	3 cut(s)	363, 468, 492
PspPI	GGNCC	1 cut(s)	49
RsaI	GTAC	3 cut(s)	39, 295, 363
RsaNI	GTAC	3 cut(s)	38, 294, 362
SalI	GTCGAC	1 cut(s)	72
SaqAI	TTAA	2 cut(s)	155, 601
SatI	GCNGC	2 cut(s)	437, 452
Sau96I	GGNCC	1 cut(s)	49
ScaI	AGTACT	1 cut(s)	295
SchI	GAGTC	3 cut(s)	203, 253, 301
SetI	ASST	9 cut(s)	39, 51, 154, 205, 363, 367, 379, 456, 551
SfaNI	GCATC	1 cut(s)	438
SinI	GGWCC	1 cut(s)	49
SphI	GCATGC	1 cut(s)	14
Sse9I	AATT	1 cut(s)	26
SsiI	CCGC	2 cut(s)	437, 473
SspI	AATATT	1 cut(s)	87
SspMI	CTAG	2 cut(s)	300, 312
StyI	CCWWGG	1 cut(s)	311
TaaI	ACNGT	1 cut(s)	525
TaqI	TCGA	2 cut(s)	73, 543
TasI	AATT	1 cut(s)	26
TatI	WGTACW	1 cut(s)	293
TauI	GCSGC	1 cut(s)	439
TfiI	GAWTC	1 cut(s)	560
Tru1I	TTAA	2 cut(s)	155, 601
Tru9I	TTAA	2 cut(s)	155, 601
TscAI	CASTG	1 cut(s)	254
TseFI	GTSAC	1 cut(s)	102
TseI	GCWGC	1 cut(s)	451
Tsp45I	GTSAC	1 cut(s)	102
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	49
XceI	RCATGY	1 cut(s)	14
XmaJI	CCTAGG	1 cut(s)	311
XmiI	GTMKAC	1 cut(s)	73
XspI	CTAG	2 cut(s)	300, 312
ZrmI	AGTACT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.