Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0019396

Physical Location & Seq

Genomic Coordinates Forward (+)

55502837 .. 55503448

Gene Structure 612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00374480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTCCGGTGTTTTCACCATACCTGCCAAATATGTATTGCAGTGGTGGACAAATACTGCTATGAGCAGGCATGCCATTGGCAAAAAATTCGATGAGGAGAGTTATGATGTAGCATTATGTGCCATAAAAGAAGCTTTAAAGCAATGCACGAGTTTGAACACCTCTGTTGAAAGCAATGCAAAACCTAATGACTCGGCAATAGATGGTATTTGTGGTATTGAAGTGAGTCAGTGTGGTATGACATCTGATGACAAGATTTTTGGTCCGAAAGTGAGTACTGCTAGCAAGACTCCTAGGAGAGTTGGGACTGGGAAAGTGGTGGCAAGGCATGGGAAAGGAAAGGTACCTCAGCCGGAAGGTATGAGAGTTGGAACACAAGACCAGTTTCCCCAAATGGTATGTCATGCTGCCTCCCATCTTAATTCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

143

Amino Acids

15.41

Weight (kDa)

8.85

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0019396)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0463751
rosa_multiflora	Rmu_sc0001918.1_g000013 Rmu_sc0002601.1_g000005
rosa_roxburghii	Rroxscaffold_5G00374480
rosa_samantha	Rh1BG413600 Rh3AG124400 Rh3BG129000 Rh3CG131300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	31
Acc65I	GGTACC	1 cut(s)	343
AccB1I	GGYRCC	1 cut(s)	343
AcsI	RAATTY	1 cut(s)	86
AfaI	GTAC	2 cut(s)	277, 345
AgsI	TTSAA	3 cut(s)	157, 170, 221
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	407
ApoI	RAATTY	1 cut(s)	86
ArsI	GACNNNNNNTTYG	4 cut(s)	242, 274, 385, 417
Asp718I	GGTACC	1 cut(s)	343
AspA2I	CCTAGG	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	7
AsuNHI	GCTAGC	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	263
AvrII	CCTAGG	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	343
BauI	CACGAG	1 cut(s)	148
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	394
BccI	CCATC	2 cut(s)	197, 423
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BfaI	CTAG	2 cut(s)	282, 294
BfuAI	ACCTGC	1 cut(s)	31
BisI	GCNGC	1 cut(s)	408
BlnI	CCTAGG	1 cut(s)	293
BlsI	GCNGC	1 cut(s)	409
BmcAI	AGTACT	1 cut(s)	277
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	345
BmrI	ACTGGG	1 cut(s)	318
BmtI	GCTAGC	1 cut(s)	285
BmuI	ACTGGG	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	348
BsaJI	CCNNGG	1 cut(s)	293
BsaWI	WCCGGW	1 cut(s)	5
Bse1I	ACTGG	2 cut(s)	313, 382
Bse3DI	GCAATG	2 cut(s)	149, 181
BseDI	CCNNGG	1 cut(s)	293
BseMI	GCAATG	2 cut(s)	149, 181
BseMII	CTCAG	1 cut(s)	362
BseNI	ACTGG	2 cut(s)	313, 382
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	394
BshNI	GGYRCC	1 cut(s)	343
BsiSI	CCGG	2 cut(s)	6, 353
BslFI	GGGAC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	319
BspCNI	CTCAG	1 cut(s)	361
BspLI	GGNNCC	1 cut(s)	345
BspMI	ACCTGC	1 cut(s)	31
BspOI	GCTAGC	1 cut(s)	285
BspT107I	GGYRCC	1 cut(s)	343
BsrDI	GCAATG	2 cut(s)	149, 181
BsrI	ACTGG	2 cut(s)	313, 382
BssECI	CCNNGG	1 cut(s)	293
BssSI	CACGAG	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	293
Bst2BI	CACGAG	1 cut(s)	148
BstAPI	GCANNNNNTGC	1 cut(s)	119
BstC8I	GCNNGC	3 cut(s)	68, 72, 283
BstDEI	CTNAG	1 cut(s)	348
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	394
BtsI	GCAGTG	1 cut(s)	47
BtsIMutI	CAGTG	2 cut(s)	47, 236
BveI	ACCTGC	1 cut(s)	31
Cac8I	GCNNGC	3 cut(s)	68, 72, 283
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	2 cut(s)	276, 344
CviAII	CATG	3 cut(s)	71, 329, 404
CviJI	RGCY	2 cut(s)	134, 352
CviKI_1	RGCY	2 cut(s)	134, 352
CviQI	GTAC	2 cut(s)	276, 344
DdeI	CTNAG	1 cut(s)	348
DraI	TTTAAA	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	293
Eco47I	GGWCC	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	293
ErhI	CCWWGG	1 cut(s)	293
FaeI	CATG	3 cut(s)	74, 332, 407
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	3 cut(s)	70, 328, 403
Fnu4HI	GCNGC	1 cut(s)	408
Fsp4HI	GCNGC	1 cut(s)	408
FspBI	CTAG	2 cut(s)	282, 294
GluI	GCNGC	1 cut(s)	408
HapII	CCGG	2 cut(s)	6, 353
Hin1II	CATG	3 cut(s)	74, 332, 407
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	3 cut(s)	191, 226, 289
HpaII	CCGG	2 cut(s)	6, 353
HphI	GGTGA	1 cut(s)	7
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	2 cut(s)	247, 267
Hpy8I	GTNNAC	1 cut(s)	48
HpyAV	CCTTC	1 cut(s)	350
HpyCH4V	TGCA	3 cut(s)	40, 147, 179
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	348
Hsp92II	CATG	3 cut(s)	74, 332, 407
KpnI	GGTACC	1 cut(s)	347
LpnPI	CCDG	6 cut(s)	19, 36, 52, 294, 366, 395
Lsp1109I	GCAGC	1 cut(s)	394
MaeI	CTAG	2 cut(s)	282, 294
MluCI	AATT	2 cut(s)	86, 421
MlyI	GAGTC	3 cut(s)	185, 235, 283
MmeI	TCCRAC	1 cut(s)	349
MnlI	CCTC	4 cut(s)	88, 172, 357, 421
MseI	TTAA	2 cut(s)	137, 420
MspI	CCGG	2 cut(s)	6, 353
MwoI	GCNNNNNNNGC	1 cut(s)	119
NheI	GCTAGC	1 cut(s)	281
NlaIII	CATG	3 cut(s)	74, 332, 407
NlaIV	GGNNCC	1 cut(s)	345
NmeAIII	GCCGAG	1 cut(s)	173
NspI	RCATGY	1 cut(s)	74
PaeI	GCATGC	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	409
PleI	GAGTC	3 cut(s)	185, 234, 283
PpsI	GAGTC	3 cut(s)	185, 234, 283
PspN4I	GGNNCC	1 cut(s)	345
PspPI	GGNCC	1 cut(s)	263
RsaI	GTAC	2 cut(s)	277, 345
RsaNI	GTAC	2 cut(s)	276, 344
SaqAI	TTAA	2 cut(s)	137, 420
SatI	GCNGC	1 cut(s)	408
Sau96I	GGNCC	1 cut(s)	263
ScaI	AGTACT	1 cut(s)	277
SchI	GAGTC	3 cut(s)	185, 235, 283
SetI	ASST	7 cut(s)	25, 136, 164, 187, 345, 349, 361
SinI	GGWCC	1 cut(s)	263
SphI	GCATGC	1 cut(s)	74
Sse9I	AATT	2 cut(s)	86, 421
SspMI	CTAG	2 cut(s)	282, 294
StyI	CCWWGG	1 cut(s)	293
TaqI	TCGA	1 cut(s)	90
TasI	AATT	2 cut(s)	86, 421
TatI	WGTACW	1 cut(s)	275
Tru1I	TTAA	2 cut(s)	137, 420
Tru9I	TTAA	2 cut(s)	137, 420
TscAI	CASTG	2 cut(s)	47, 236
TseI	GCWGC	1 cut(s)	407
TspRI	CASTG	2 cut(s)	47, 236
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	86
XceI	RCATGY	1 cut(s)	74
XmaJI	CCTAGG	1 cut(s)	293
XspI	CTAG	2 cut(s)	282, 294
ZrmI	AGTACT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.