Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0019396

Physical Location & Seq

Genomic Coordinates Forward (+)

10917331 .. 10918693

Gene Structure 1363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG129000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGTCTGGTGTTTTCACCATACCTGCCAAATATGTATTGCAGCGGTGGACAAATACTGCTATGAGCAGGCATGCCATTGGCGAAAAATTGGATGAGGTACAATCTAAGGTCCGTCGTTACAATGATTTATGTCGACGAGCCATAATATTGGGTGAAGAAGGGTCACTTTCTCAGGAGAGTTATGATGTAGCATTGTGTGCCATAAAAGAAGCTTTAAAGCAATGCACGAGTTTGAACACCTCTGTTGAAAGCAATGCAAAACCTAATGACTCGGCAATAGATGGTATTTGTGGTATTGAAGTGAGTCAGTGTGGTATGACATCTGATGACAAGATTTTTGGTCTGAAAGTGAGTACTGCTAGCAAGACTCCTAGGAGAGTTGGGACTGGGAAAGTGGTGGCAAGGCATGGGAAAGGAAAGGTACCTCAGCCGGAAGGTATGAGAGTTGGAACACAAGACCAGTTTCCCCAAATGCAAGTTTGTTCTGAGACAAGGCCGCCTATGCTGATGCAGATACATAATGTGGTGCCTCCGCAGTTGCATAATATGGTGCCATCAATGTTTCAAAATGTCTCACCGGCACAGTTCCATAACGTGGCTTGTTCGACACCTGTGCAGGAGAATCGTCTCCCTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

212

Amino Acids

23.3

Weight (kDa)

8.87

Isoelectric Point (pI)

55.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019396)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0463751
rosa_multiflora	Rmu_sc0001918.1_g000013 Rmu_sc0002601.1_g000005
rosa_roxburghii	Rroxscaffold_5G00374480
rosa_samantha	Rh1BG413600 Rh3AG124400 Rh3BG129000 Rh3CG131300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	31
Acc65I	GGTACC	1 cut(s)	421
AccB1I	GGYRCC	3 cut(s)	421, 526, 550
AccB7I	CCANNNNNTGG	1 cut(s)	595
AccI	GTMKAC	1 cut(s)	133
AciI	CCGC	3 cut(s)	43, 497, 533
AfaI	GTAC	3 cut(s)	99, 355, 423
AfiI	CCNNNNNNNGG	1 cut(s)	595
AgsI	TTSAA	4 cut(s)	235, 248, 299, 566
AluBI	AGCT	1 cut(s)	212
AluI	AGCT	1 cut(s)	212
Alw26I	GTCTC	3 cut(s)	482, 577, 632
AoxI	GGCC	1 cut(s)	494
ApeKI	GCWGC	1 cut(s)	40
ArsI	GACNNNNNNTTYG	2 cut(s)	320, 352
Asp718I	GGTACC	1 cut(s)	421
AspA2I	CCTAGG	1 cut(s)	371
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	3 cut(s)	7, 164, 567
AsuNHI	GCTAGC	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	109
AvrII	CCTAGG	1 cut(s)	371
BanI	GGYRCC	3 cut(s)	421, 526, 550
BauI	CACGAG	1 cut(s)	226
BbvCI	CCTCAGC	1 cut(s)	426
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	2 cut(s)	275, 562
BcgI	CGANNNNNNTGC	4 cut(s)	595, 605, 629, 639
BcoDI	GTCTC	3 cut(s)	482, 577, 632
BfaI	CTAG	2 cut(s)	360, 372
BfuAI	ACCTGC	1 cut(s)	31
BisI	GCNGC	2 cut(s)	41, 497
BlnI	CCTAGG	1 cut(s)	371
BlsI	GCNGC	2 cut(s)	42, 498
BmcAI	AGTACT	1 cut(s)	355
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	3 cut(s)	423, 528, 552
BmrI	ACTGGG	1 cut(s)	396
BmsI	GCATC	1 cut(s)	498
BmtI	GCTAGC	1 cut(s)	363
BmuI	ACTGGG	1 cut(s)	396
Bpu10I	CCTNAGC	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	371
Bsc4I	CCNNNNNNNGG	1 cut(s)	595
Bse118I	RCCGGY	1 cut(s)	577
Bse1I	ACTGG	2 cut(s)	391, 460
Bse3DI	GCAATG	2 cut(s)	227, 259
BseDI	CCNNGG	1 cut(s)	371
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	595
BseMI	GCAATG	2 cut(s)	227, 259
BseMII	CTCAG	3 cut(s)	185, 440, 477
BseNI	ACTGG	2 cut(s)	391, 460
BseXI	GCAGC	1 cut(s)	52
BsgI	GTGCAG	1 cut(s)	635
BshFI	GGCC	1 cut(s)	496
BshNI	GGYRCC	3 cut(s)	421, 526, 550
BsiSI	CCGG	2 cut(s)	431, 578
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	1 cut(s)	595
BsmAI	GTCTC	3 cut(s)	482, 577, 632
BsmBI	CGTCTC	1 cut(s)	632
BsmFI	GGGAC	1 cut(s)	397
BsnI	GGCC	1 cut(s)	496
BspACI	CCGC	3 cut(s)	43, 497, 533
BspANI	GGCC	1 cut(s)	496
BspCNI	CTCAG	3 cut(s)	184, 439, 478
BspLI	GGNNCC	3 cut(s)	423, 528, 552
BspMI	ACCTGC	1 cut(s)	31
BspOI	GCTAGC	1 cut(s)	363
BspT107I	GGYRCC	3 cut(s)	421, 526, 550
BsrDI	GCAATG	2 cut(s)	227, 259
BsrFI	RCCGGY	1 cut(s)	577
BsrI	ACTGG	2 cut(s)	391, 460
BssAI	RCCGGY	1 cut(s)	577
BssECI	CCNNGG	1 cut(s)	371
BssSI	CACGAG	1 cut(s)	226
BssT1I	CCWWGG	1 cut(s)	371
Bst2BI	CACGAG	1 cut(s)	226
Bst4CI	ACNGT	1 cut(s)	585
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstC8I	GCNNGC	3 cut(s)	68, 72, 361
BstDEI	CTNAG	5 cut(s)	105, 171, 426, 486, 633
BstF5I	GGATG	1 cut(s)	97
BstMAI	GTCTC	3 cut(s)	482, 577, 632
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 502
BstNSI	RCATGY	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	52
BstXI	CCANNNNNNTGG	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	496
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	314
BveI	ACCTGC	1 cut(s)	31
Cac8I	GCNNGC	3 cut(s)	68, 72, 361
Cfr10I	RCCGGY	1 cut(s)	577
Cfr13I	GGNCC	1 cut(s)	109
Csp6I	GTAC	3 cut(s)	98, 354, 422
CviAII	CATG	2 cut(s)	71, 407
CviJI	RGCY	5 cut(s)	140, 212, 430, 496, 599
CviKI_1	RGCY	5 cut(s)	140, 212, 430, 496, 599
CviQI	GTAC	3 cut(s)	98, 354, 422
DdeI	CTNAG	5 cut(s)	105, 171, 426, 486, 633
DraI	TTTAAA	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	371
Eco47I	GGWCC	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	371
ErhI	CCWWGG	1 cut(s)	371
Esp3I	CGTCTC	1 cut(s)	632
FaeI	CATG	2 cut(s)	74, 410
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	2 cut(s)	70, 406
FblI	GTMKAC	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	41, 497
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	2 cut(s)	41, 497
FspBI	CTAG	2 cut(s)	360, 372
GluI	GCNGC	2 cut(s)	41, 497
HaeIII	GGCC	1 cut(s)	496
HapII	CCGG	2 cut(s)	431, 578
Hin1II	CATG	2 cut(s)	74, 410
HincII	GTYRAC	1 cut(s)	134
HindII	GTYRAC	1 cut(s)	134
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	4 cut(s)	269, 304, 367, 622
HpaII	CCGG	2 cut(s)	431, 578
HphI	GGTGA	3 cut(s)	7, 164, 567
Hpy166II	GTNNAC	2 cut(s)	48, 134
Hpy188I	TCNGA	3 cut(s)	325, 345, 487
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	2 cut(s)	48, 134
Hpy99I	CGWCG	2 cut(s)	117, 138
HpyAV	CCTTC	2 cut(s)	152, 428
HpyCH4III	ACNGT	1 cut(s)	585
HpyCH4IV	ACGT	1 cut(s)	594
HpyCH4V	TGCA	7 cut(s)	40, 225, 257, 475, 511, 541, 616
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 502
HpyF3I	CTNAG	5 cut(s)	105, 171, 426, 486, 633
HpySE526I	ACGT	1 cut(s)	594
Hsp92II	CATG	2 cut(s)	74, 410
KpnI	GGTACC	1 cut(s)	425
LpnPI	CCDG	9 cut(s)	36, 52, 158, 372, 444, 473, 591, 602, 624
Lsp1109I	GCAGC	1 cut(s)	52
LweI	GCATC	1 cut(s)	498
MaeI	CTAG	2 cut(s)	360, 372
MaeII	ACGT	1 cut(s)	594
MaeIII	GTNAC	2 cut(s)	116, 162
MboII	GAAGA	1 cut(s)	167
MluCI	AATT	1 cut(s)	86
MlyI	GAGTC	3 cut(s)	263, 313, 361
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	4 cut(s)	88, 250, 435, 540
MseI	TTAA	1 cut(s)	215
MspA1I	CMGCKG	1 cut(s)	43
MspI	CCGG	2 cut(s)	431, 578
MwoI	GCNNNNNNNGC	2 cut(s)	197, 502
NheI	GCTAGC	1 cut(s)	359
NlaIII	CATG	2 cut(s)	74, 410
NlaIV	GGNNCC	3 cut(s)	423, 528, 552
NmeAIII	GCCGAG	1 cut(s)	251
NmuCI	GTSAC	1 cut(s)	162
NspI	RCATGY	1 cut(s)	74
PaeI	GCATGC	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	622
PflMI	CCANNNNNTGG	1 cut(s)	595
PkrI	GCNGC	2 cut(s)	42, 498
PleI	GAGTC	3 cut(s)	263, 312, 361
PpsI	GAGTC	3 cut(s)	263, 312, 361
PspN4I	GGNNCC	3 cut(s)	423, 528, 552
PspPI	GGNCC	1 cut(s)	109
RsaI	GTAC	3 cut(s)	99, 355, 423
RsaNI	GTAC	3 cut(s)	98, 354, 422
SalI	GTCGAC	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	215
SatI	GCNGC	2 cut(s)	41, 497
Sau96I	GGNCC	1 cut(s)	109
ScaI	AGTACT	1 cut(s)	355
SchI	GAGTC	3 cut(s)	263, 313, 361
SfaNI	GCATC	1 cut(s)	498
SinI	GGWCC	1 cut(s)	109
SphI	GCATGC	1 cut(s)	74
Sse9I	AATT	1 cut(s)	86
SsiI	CCGC	3 cut(s)	43, 497, 533
SspI	AATATT	1 cut(s)	147
SspMI	CTAG	2 cut(s)	360, 372
StyI	CCWWGG	1 cut(s)	371
TaaI	ACNGT	1 cut(s)	585
TaiI	ACGT	1 cut(s)	597
TaqI	TCGA	2 cut(s)	133, 605
TasI	AATT	1 cut(s)	86
TatI	WGTACW	1 cut(s)	353
TauI	GCSGC	1 cut(s)	499
TfiI	GAWTC	1 cut(s)	622
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TscAI	CASTG	1 cut(s)	314
TseFI	GTSAC	1 cut(s)	162
TseI	GCWGC	1 cut(s)	40
Tsp45I	GTSAC	1 cut(s)	162
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	314
Van91I	CCANNNNNTGG	1 cut(s)	595
VpaK11BI	GGWCC	1 cut(s)	109
XceI	RCATGY	1 cut(s)	74
XmaJI	CCTAGG	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	133
XspI	CTAG	2 cut(s)	360, 372
ZrmI	AGTACT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.