RchiOBHm_Chr3g0467601

Cation H( ) antiporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0017139
Physical Location & Seq
Forward (+)
13725772 .. 13726759
988 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43355

Sequence Viewer

Length: 894 bp
ATGATGTTCATTCTGTTCGATCTAAAGGAGCTGTCTTTGTTTGAACTACTTACCATTGATGAGCTGAAATACAAGCTTCTCAGCATCAACTATGAACTAGAATCAGCGCAAATAAGGGCGAAGCAGGAGGTAAGCAAAAACGAGGAGATCACAAAGCAGTTGTTTCATCTCTTGAAGGTAGCTTGTCGAGAAAGAGATGAAGCAAATGACCAGTTGCAAAAACTACTCAAAATGTTCTTGCCCATACCAGCTGAAAATGAAACAAGCCCTTTGTTCTCTGAGGTCAACAATGAAAATTATCCAAGTCTGCAAAAAGCCTCAAATTTCTCAACAGTTAAAGAATCAGATGTTATATCCAAAACTAGTTCATATCCCACTAAATACAACTTTGCTGCTGATTCAAGTAACTTAGGATTTTCCAACAATGCTGCTGTTCAAGGGTGTGATGAGTCCGTTCAGGTGGCTACGATGTCTTCATCAAACTCAAAGATCATTGATCGTGCTGATGTTTTGATTGATAATATTGTTAGGGTCAGATCACTGCCTAAGAAAGGAAGATTGTTCCAGGCTGTAATGGAAAATGAGCCTTTACTTCAGACACTTCTCGTTGCTCCTCTTCCCAAGTGGAAAAACCCTCCACCTCTTCCTCCTTTAAAAAGTTCATCCAATCTCATTTATGGATGTGACTTTGGCTCACAAGAACAGATTGAAGCAGTCAAGCCAATTCGTGCAGTACAAGGTTCAAGCTCACTCGGATTTTCTCACATACCATCTTCATCTGTGTTGGACTTTGAACATGGTTCTGCTAGTGTGAAGACTCGAGTTGGTAACAGTTCAAGTGATCTCATGCAGAGTCAGATTGGGACTTGTAAGAGAAGAAAAAGAAGGTTCTGA

Protein Analysis

297

Amino Acids

33.2

Weight (kDa)

8.23

Isoelectric Point (pI)

51.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 18 - 215 1e-29 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09940
fragaria_vesca FvH4_6g14520
malus_domestica MD12G1136600.v1.1
rosa_chinensis RchiOBHm_Chr3g0467601
rosa_laevigata RLG00000024486
rosa_multiflora Rmu_sc0011632.1_g000011
rosa_roxburghii Rroxscaffold_6G00413560
rosa_rugosa Rorug03G0088400
rosa_samantha Rh3AG136700 Rh3BG158500 Rh3CG158200 Rh3DG159000
rosa_wichuraiana Rw3G012950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 322
AcuI CTGAAG 1 cut(s) 578
AfaI GTAC 1 cut(s) 735
AfiI CCNNNNNNNGG 1 cut(s) 551
AgsI TTSAA 8 cut(s) 44, 175, 402, 437, 710, 744, 794, 837
AhlI ACTAGT 1 cut(s) 362
AjnI CCWGG 1 cut(s) 564
AluBI AGCT 6 cut(s) 31, 64, 76, 182, 251, 747
AluI AGCT 6 cut(s) 31, 64, 76, 182, 251, 747
Ama87I CYCGRG 1 cut(s) 819
ApeKI GCWGC 2 cut(s) 392, 428
ApoI RAATTY 1 cut(s) 322
AspLEI GCGC 1 cut(s) 109
AvaI CYCGRG 1 cut(s) 819
BbsI GAAGAC 2 cut(s) 465, 821
BbvI GCAGC 2 cut(s) 379, 415
BccI CCATC 1 cut(s) 778
BciT130I CCWGG 1 cut(s) 566
BcuI ACTAGT 1 cut(s) 362
BfaI CTAG 3 cut(s) 98, 363, 807
BisI GCNGC 2 cut(s) 393, 429
BlsI GCNGC 2 cut(s) 394, 430
Bme1390I CCNGG 1 cut(s) 566
BmeT110I CYCGRG 1 cut(s) 819
BmrFI CCNGG 1 cut(s) 566
BmsI GCATC 1 cut(s) 93
BpiI GAAGAC 2 cut(s) 465, 821
Bsc4I CCNNNNNNNGG 1 cut(s) 551
Bse1I ACTGG 1 cut(s) 211
BseBI CCWGG 1 cut(s) 566
BseGI GGATG 2 cut(s) 662, 686
BseLI CCNNNNNNNGG 1 cut(s) 551
BseMII CTCAG 2 cut(s) 94, 270
BseNI ACTGG 1 cut(s) 211
BseRI GAGGAG 2 cut(s) 158, 603
BseXI GCAGC 2 cut(s) 379, 415
BsgI GTGCAG 1 cut(s) 750
BsiHKCI CYCGRG 1 cut(s) 819
BslFI GGGAC 1 cut(s) 877
BslI CCNNNNNNNGG 1 cut(s) 551
BsmFI GGGAC 1 cut(s) 877
BsoBI CYCGRG 1 cut(s) 819
Bsp143I GATC 6 cut(s) 19, 147, 489, 496, 536, 841
BspCNI CTCAG 2 cut(s) 93, 271
BsrI ACTGG 1 cut(s) 211
BssMI GATC 6 cut(s) 19, 147, 489, 496, 536, 841
Bst2UI CCWGG 1 cut(s) 566
Bst4CI ACNGT 2 cut(s) 334, 833
Bst6I CTCTTC 2 cut(s) 621, 648
BstDEI CTNAG 4 cut(s) 80, 279, 409, 546
BstENI CCTNNNNNAGG 1 cut(s) 549
BstF5I GGATG 2 cut(s) 662, 686
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 6 cut(s) 22, 150, 492, 499, 539, 844
BstMBI GATC 6 cut(s) 19, 147, 489, 496, 536, 841
BstNI CCWGG 1 cut(s) 566
BstSCI CCNGG 1 cut(s) 564
BstV1I GCAGC 2 cut(s) 379, 415
BstV2I GAAGAC 2 cut(s) 465, 821
BtsCI GGATG 2 cut(s) 662, 686
BtsI GCAGTG 1 cut(s) 539
BtsIMutI CAGTG 1 cut(s) 539
CfoI GCGC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 734
CviAII CATG 2 cut(s) 797, 847
CviQI GTAC 1 cut(s) 734
DdeI CTNAG 4 cut(s) 80, 279, 409, 546
DpnI GATC 6 cut(s) 21, 149, 491, 498, 538, 843
DpnII GATC 6 cut(s) 19, 147, 489, 496, 536, 841
DraI TTTAAA 1 cut(s) 654
Eam1104I CTCTTC 2 cut(s) 621, 648
EarI CTCTTC 2 cut(s) 621, 648
Eco57I CTGAAG 1 cut(s) 578
Eco88I CYCGRG 1 cut(s) 819
EcoNI CCTNNNNNAGG 1 cut(s) 549
EcoRII CCWGG 1 cut(s) 564
FaeI CATG 2 cut(s) 800, 850
FaiI YATR 8 cut(s) 93, 245, 353, 370, 678, 767, 798, 848
FaqI GGGAC 1 cut(s) 877
FatI CATG 2 cut(s) 796, 846
Fnu4HI GCNGC 2 cut(s) 393, 429
FokI GGATG 2 cut(s) 649, 693
Fsp4HI GCNGC 2 cut(s) 393, 429
FspBI CTAG 3 cut(s) 98, 363, 807
GlaI GCGC 1 cut(s) 108
GluI GCNGC 2 cut(s) 393, 429
HhaI GCGC 1 cut(s) 109
Hin1II CATG 2 cut(s) 800, 850
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 6 cut(s) 101, 341, 398, 449, 817, 853
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 7 cut(s) 280, 346, 536, 597, 755, 858, 893
Hpy188III TCNNGA 2 cut(s) 172, 188
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 2 cut(s) 169, 879
HpyCH4III ACNGT 2 cut(s) 334, 833
HpyCH4V TGCA 4 cut(s) 217, 310, 731, 850
HpyF3I CTNAG 4 cut(s) 80, 279, 409, 546
Hsp92II CATG 2 cut(s) 800, 850
HspAI GCGC 1 cut(s) 107
Kzo9I GATC 6 cut(s) 19, 147, 489, 496, 536, 841
LmnI GCTCC 2 cut(s) 28, 616
LpnPI CCDG 6 cut(s) 110, 224, 261, 443, 551, 578
Lsp1109I GCAGC 2 cut(s) 379, 415
LweI GCATC 1 cut(s) 93
MaeI CTAG 3 cut(s) 98, 363, 807
MaeIII GTNAC 3 cut(s) 404, 683, 827
MalI GATC 6 cut(s) 21, 149, 491, 498, 538, 843
MboI GATC 6 cut(s) 19, 147, 489, 496, 536, 841
MboII GAAGA 7 cut(s) 465, 567, 608, 635, 765, 826, 888
MluCI AATT 3 cut(s) 295, 322, 723
MlyI GAGTC 3 cut(s) 458, 811, 862
MmeI TCCRAC 2 cut(s) 444, 765
MnlI CCTC 8 cut(s) 121, 136, 274, 328, 624, 645, 651, 657
MseI TTAA 2 cut(s) 336, 653
MspA1I CMGCKG 1 cut(s) 251
MspR9I CCNGG 1 cut(s) 566
MvaI CCWGG 1 cut(s) 566
NdeII GATC 6 cut(s) 19, 147, 489, 496, 536, 841
NlaIII CATG 2 cut(s) 800, 850
NmuCI GTSAC 1 cut(s) 683
PaeR7I CTCGAG 1 cut(s) 819
PfeI GAWTC 3 cut(s) 101, 341, 398
PkrI GCNGC 2 cut(s) 394, 430
PleI GAGTC 3 cut(s) 457, 811, 861
PpsI GAGTC 3 cut(s) 457, 811, 861
Psp6I CCWGG 1 cut(s) 564
PspGI CCWGG 1 cut(s) 564
PspXI VCTCGAGB 1 cut(s) 819
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 1 cut(s) 735
RsaNI GTAC 1 cut(s) 734
SaqAI TTAA 2 cut(s) 336, 653
SatI GCNGC 2 cut(s) 393, 429
Sau3AI GATC 6 cut(s) 19, 147, 489, 496, 536, 841
SchI GAGTC 3 cut(s) 458, 811, 862
ScrFI CCNGG 1 cut(s) 566
SfaNI GCATC 1 cut(s) 93
Sfr274I CTCGAG 1 cut(s) 819
SlaI CTCGAG 1 cut(s) 819
SmlI CTYRAG 1 cut(s) 819
SmoI CTYRAG 1 cut(s) 819
SpeI ACTAGT 1 cut(s) 362
Sse9I AATT 3 cut(s) 295, 322, 723
SspI AATATT 1 cut(s) 523
SspMI CTAG 3 cut(s) 98, 363, 807
StyD4I CCNGG 1 cut(s) 564
TaaI ACNGT 2 cut(s) 334, 833
TaqI TCGA 3 cut(s) 18, 187, 820
TasI AATT 3 cut(s) 295, 322, 723
TatI WGTACW 1 cut(s) 733
TfiI GAWTC 3 cut(s) 101, 341, 398
Tru1I TTAA 2 cut(s) 336, 653
Tru9I TTAA 2 cut(s) 336, 653
TscAI CASTG 1 cut(s) 546
TseFI GTSAC 1 cut(s) 683
TseI GCWGC 2 cut(s) 392, 428
Tsp45I GTSAC 1 cut(s) 683
TspDTI ATGAA 9 cut(s) 108, 155, 213, 273, 306, 357, 465, 651, 765
TspGWI ACGGA 1 cut(s) 442
TspRI CASTG 1 cut(s) 546
XagI CCTNNNNNAGG 1 cut(s) 549
XapI RAATTY 1 cut(s) 322
XhoI CTCGAG 1 cut(s) 819
XspI CTAG 3 cut(s) 98, 363, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.