RchiOBHm_Chr3g0483211

Protein of unknown function (DUF563)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0018886
Physical Location & Seq
Reverse (-)
29393721 .. 29393972
252 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44798

Sequence Viewer

Length: 252 bp
ATGGATGAGAAAATTGGTTTTCAAGTTCAAGTTCTGAGACCCGAGCCAACAACGGAATTAGCAAAGATTTACTGGGATCTAAATTCAAGTGATGTCATGATTGGAGTTCATGGTGCAGCCATGACACATCTTCTGTTTATGAAGCCTGGATGGGGAGATGAGGCCTATTATGAAAAACCTGCAAGGAAGCTTGGCCTAAAGTACACTGGCTATCACATTCTTACCAAGGAGAGCTCATTATATGAGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
DUF563

Protein Analysis

83

Amino Acids

9.52

Weight (kDa)

5.85

Isoelectric Point (pI)

27.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 4 - 50 9.1e-06 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018886)

Species Orthologous Gene IDs
malus_domestica MD14G1074200.v1.1
pyrus_communis pycom14g06330
rosa_chinensis RchiOBHm_Chr3g0483211
rosa_laevigata RLG00000023296 RLG00000023298
rosa_multiflora Rmu_co8194502.1_g000001 Rmu_sc0007550.1_g000001
rosa_roxburghii Rroxscaffold_6G00398540
rosa_samantha Rh3BG290200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 187
AclWI GGATC 1 cut(s) 84
AcsI RAATTY 1 cut(s) 82
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 152
AgsI TTSAA 3 cut(s) 23, 29, 87
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 2 cut(s) 190, 234
AluI AGCT 2 cut(s) 190, 234
Alw21I GWGCWC 1 cut(s) 236
Alw26I GTCTC 1 cut(s) 31
AlwI GGATC 1 cut(s) 84
Ama87I CYCGRG 1 cut(s) 41
AoxI GGCC 2 cut(s) 162, 193
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 1 cut(s) 82
AvaI CYCGRG 1 cut(s) 41
BanII GRGCYC 1 cut(s) 236
Bbv12I GWGCWC 1 cut(s) 236
BbvI GCAGC 1 cut(s) 128
BccI CCATC 1 cut(s) 144
BciT130I CCWGG 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 31
BfuAI ACCTGC 1 cut(s) 187
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 147
BmeT110I CYCGRG 1 cut(s) 41
BmrFI CCNGG 1 cut(s) 147
BmrI ACTGGG 1 cut(s) 82
BmuI ACTGGG 1 cut(s) 82
BsaI GGTCTC 1 cut(s) 31
BsaJI CCNNGG 1 cut(s) 225
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse1I ACTGG 2 cut(s) 77, 211
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 2 cut(s) 10, 155
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 2 cut(s) 77, 211
BseXI GCAGC 1 cut(s) 128
BsgI GTGCAG 1 cut(s) 135
BshFI GGCC 2 cut(s) 164, 195
BsiHKAI GWGCWC 1 cut(s) 236
BsiHKCI CYCGRG 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 31
BsnI GGCC 2 cut(s) 164, 195
Bso31I GGTCTC 1 cut(s) 31
BsoBI CYCGRG 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 236
Bsp143I GATC 1 cut(s) 76
BspANI GGCC 2 cut(s) 164, 195
BspCNI CTCAG 1 cut(s) 27
BspHI TCATGA 1 cut(s) 96
BspMI ACCTGC 1 cut(s) 187
BspPI GGATC 1 cut(s) 84
BspTNI GGTCTC 1 cut(s) 31
BsrI ACTGG 2 cut(s) 77, 211
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 1 cut(s) 76
BssT1I CCWWGG 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 147
BstDEI CTNAG 1 cut(s) 35
BstF5I GGATG 2 cut(s) 10, 155
BstKTI GATC 1 cut(s) 79
BstMAI GTCTC 1 cut(s) 31
BstMBI GATC 1 cut(s) 76
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 145
BstV1I GCAGC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BsuRI GGCC 2 cut(s) 164, 195
BtsCI GGATG 2 cut(s) 10, 155
BtsIMutI CAGTG 1 cut(s) 204
BveI ACCTGC 1 cut(s) 187
CciI TCATGA 1 cut(s) 96
Csp6I GTAC 1 cut(s) 202
CviAII CATG 3 cut(s) 97, 110, 121
CviJI RGCY 8 cut(s) 46, 119, 145, 164, 190, 195, 210, 234
CviKI_1 RGCY 8 cut(s) 46, 119, 145, 164, 190, 195, 210, 234
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 1 cut(s) 35
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Ecl136II GAGCTC 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 225
Eco147I AGGCCT 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 236
Eco31I GGTCTC 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 41
EcoICRI GAGCTC 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 236
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 3 cut(s) 100, 113, 124
FaiI YATR 8 cut(s) 98, 111, 122, 140, 171, 241, 243, 250
FatI CATG 3 cut(s) 96, 109, 120
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 2 cut(s) 17, 162
FriOI GRGCYC 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 117
HaeIII GGCC 2 cut(s) 164, 195
Hin1II CATG 3 cut(s) 100, 113, 124
HindIII AAGCTT 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 1 cut(s) 204
HpyCH4V TGCA 2 cut(s) 116, 182
HpyF3I CTNAG 1 cut(s) 35
Hsp92II CATG 3 cut(s) 100, 113, 124
Kzo9I GATC 1 cut(s) 76
LpnPI CCDG 5 cut(s) 58, 132, 159, 192, 192
Lsp1109I GCAGC 1 cut(s) 128
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 1 cut(s) 122
MflI RGATCY 1 cut(s) 76
MhlI GDGCHC 1 cut(s) 236
MluCI AATT 3 cut(s) 12, 56, 82
MnlI CCTC 1 cut(s) 154
MspR9I CCNGG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 147
NdeII GATC 1 cut(s) 76
NlaIII CATG 3 cut(s) 100, 113, 124
PagI TCATGA 1 cut(s) 96
PceI AGGCCT 1 cut(s) 164
PkrI GCNGC 1 cut(s) 118
Psp124BI GAGCTC 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PsuI RGATCY 1 cut(s) 76
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SacI GAGCTC 1 cut(s) 236
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 1 cut(s) 76
ScrFI CCNGG 1 cut(s) 147
SduI GDGCHC 1 cut(s) 236
SetI ASST 3 cut(s) 181, 192, 236
Sse9I AATT 3 cut(s) 12, 56, 82
SseBI AGGCCT 1 cut(s) 164
SstI GAGCTC 1 cut(s) 236
StuI AGGCCT 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 145
StyI CCWWGG 1 cut(s) 225
TasI AATT 3 cut(s) 12, 56, 82
TatI WGTACW 1 cut(s) 201
TscAI CASTG 1 cut(s) 211
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 3 cut(s) 98, 155, 186
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 1 cut(s) 211
XapI RAATTY 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.