Rmu_co8194502.1_g000001

Protein of unknown function (DUF563)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8194502.1
OG0018886
Physical Location & Seq
Reverse (-)
221 .. 646
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8194502.1_g000001.1.cds

Sequence Viewer

Length: 426 bp
atgttagcagagatttattgggctctaaattcgagtgacgtcatgattggggttcatggtgctgccatgacacattttctgttcatgaagcctggttctgtgttcattcaagtcattcctctcggaactgaatgggcagcagaggcatattatggagaacctgcaaagaagcttgggttgaagtacattggataccaaatccttacgaaagagagctcattatatgacaagtatgataaggatgatcctgttcttaaagatccaaggagtgtaaccagaaagggatggcaatacacaaagatgatctatcttgaggatcagacagtgagactacacctcccaagatttcggaagcagttggttggcgcttttgattacaccattgatagattgaatcagcagggtcctaatattcagtcacattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
DUF563

Protein Analysis

141

Amino Acids

16.28

Weight (kDa)

8.71

Isoelectric Point (pI)

26.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018886)

Species Orthologous Gene IDs
malus_domestica MD14G1074200.v1.1
pyrus_communis pycom14g06330
rosa_chinensis RchiOBHm_Chr3g0483211
rosa_laevigata RLG00000023296 RLG00000023298
rosa_multiflora Rmu_co8194502.1_g000001 Rmu_sc0007550.1_g000001
rosa_roxburghii Rroxscaffold_6G00398540
rosa_samantha Rh3BG290200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 42
Acc36I ACCTGC 1 cut(s) 169
AclWI GGATC 3 cut(s) 239, 254, 324
AcsI RAATTY 1 cut(s) 28
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 1 cut(s) 185
AgsI TTSAA 3 cut(s) 110, 181, 394
AjnI CCWGG 1 cut(s) 91
AluBI AGCT 2 cut(s) 172, 216
AluI AGCT 2 cut(s) 172, 216
Alw21I GWGCWC 1 cut(s) 218
Alw26I GTCTC 1 cut(s) 322
AlwI GGATC 3 cut(s) 239, 254, 324
ApeKI GCWGC 2 cut(s) 62, 137
ApoI RAATTY 1 cut(s) 28
AspLEI GCGC 1 cut(s) 368
AspS9I GGNCC 1 cut(s) 404
AvaII GGWCC 1 cut(s) 404
BanII GRGCYC 2 cut(s) 25, 218
Bbv12I GWGCWC 1 cut(s) 218
BbvI GCAGC 2 cut(s) 49, 149
BccI CCATC 1 cut(s) 279
BciT130I CCWGG 1 cut(s) 93
BciVI GTATCC 1 cut(s) 185
BcoDI GTCTC 1 cut(s) 322
BfoI RGCGCY 1 cut(s) 369
BfuAI ACCTGC 1 cut(s) 169
BfuI GTATCC 1 cut(s) 185
BisI GCNGC 2 cut(s) 63, 138
BlsI GCNGC 2 cut(s) 64, 139
Bme1390I CCNGG 1 cut(s) 93
Bme18I GGWCC 1 cut(s) 404
BmgT120I GGNCC 1 cut(s) 404
BmiI GGNNCC 1 cut(s) 405
BmrFI CCNGG 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 332
BsaHI GRCGYC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 263
BsaXI ACNNNNNCTCC 2 cut(s) 321, 351
BseBI CCWGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 263
BseGI GGATG 2 cut(s) 247, 290
BseXI GCAGC 2 cut(s) 49, 149
BsiHKAI GWGCWC 1 cut(s) 218
BsmAI GTCTC 1 cut(s) 322
Bsp1286I GDGCHC 2 cut(s) 25, 218
Bsp143I GATC 4 cut(s) 244, 259, 303, 316
BspHI TCATGA 2 cut(s) 42, 84
BspLI GGNNCC 1 cut(s) 405
BspMI ACCTGC 1 cut(s) 169
BspPI GGATC 3 cut(s) 239, 254, 324
BssECI CCNNGG 1 cut(s) 263
BssMI GATC 4 cut(s) 244, 259, 303, 316
BssNI GRCGYC 1 cut(s) 39
BssT1I CCWWGG 1 cut(s) 263
Bst2UI CCWGG 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 325
BstACI GRCGYC 1 cut(s) 39
BstF5I GGATG 2 cut(s) 247, 290
BstH2I RGCGCY 1 cut(s) 369
BstHHI GCGC 1 cut(s) 368
BstKTI GATC 4 cut(s) 247, 262, 306, 319
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 4 cut(s) 244, 259, 303, 316
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNI CCWGG 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 91
BstV1I GCAGC 2 cut(s) 49, 149
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
BsuI GTATCC 1 cut(s) 185
BtsCI GGATG 2 cut(s) 247, 290
BtsIMutI CAGTG 1 cut(s) 330
BveI ACCTGC 1 cut(s) 169
CciI TCATGA 2 cut(s) 42, 84
CfoI GCGC 1 cut(s) 368
Cfr13I GGNCC 1 cut(s) 404
Csp6I GTAC 1 cut(s) 184
CviAII CATG 4 cut(s) 43, 56, 67, 85
CviJI RGCY 4 cut(s) 23, 91, 172, 216
CviKI_1 RGCY 4 cut(s) 23, 91, 172, 216
CviQI GTAC 1 cut(s) 184
DpnI GATC 4 cut(s) 246, 261, 305, 318
DpnII GATC 4 cut(s) 244, 259, 303, 316
Ecl136II GAGCTC 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 263
Eco24I GRGCYC 2 cut(s) 25, 218
Eco47I GGWCC 1 cut(s) 404
Eco53kI GAGCTC 1 cut(s) 216
EcoICRI GAGCTC 1 cut(s) 216
EcoO109I RGGNCCY 1 cut(s) 404
EcoRII CCWGG 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 263
EcoT38I GRGCYC 2 cut(s) 25, 218
ErhI CCWWGG 1 cut(s) 263
FaeI CATG 4 cut(s) 46, 59, 70, 88
FaiI YATR 9 cut(s) 44, 57, 68, 86, 148, 153, 223, 225, 234
FatI CATG 4 cut(s) 42, 55, 66, 84
Fnu4HI GCNGC 2 cut(s) 63, 138
FokI GGATG 2 cut(s) 254, 297
FriOI GRGCYC 2 cut(s) 25, 218
Fsp4HI GCNGC 2 cut(s) 63, 138
GlaI GCGC 1 cut(s) 367
GluI GCNGC 2 cut(s) 63, 138
HaeII RGCGCY 1 cut(s) 369
HhaI GCGC 1 cut(s) 368
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 4 cut(s) 46, 59, 70, 88
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 1 cut(s) 394
Hpy188I TCNGA 3 cut(s) 125, 321, 351
Hpy188III TCNNGA 3 cut(s) 43, 85, 311
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpySE526I ACGT 1 cut(s) 39
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 4 cut(s) 46, 59, 70, 88
HspAI GCGC 1 cut(s) 366
Kzo9I GATC 4 cut(s) 244, 259, 303, 316
LpnPI CCDG 6 cut(s) 78, 105, 174, 261, 289, 386
Lsp1109I GCAGC 2 cut(s) 49, 149
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 3 cut(s) 35, 271, 417
MalI GATC 4 cut(s) 246, 261, 305, 318
MboI GATC 4 cut(s) 244, 259, 303, 316
MflI RGATCY 1 cut(s) 259
MhlI GDGCHC 2 cut(s) 25, 218
MluCI AATT 1 cut(s) 28
MnlI CCTC 4 cut(s) 129, 136, 307, 347
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 1 cut(s) 299
MspR9I CCNGG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 143
NdeII GATC 4 cut(s) 244, 259, 303, 316
NlaIII CATG 4 cut(s) 46, 59, 70, 88
NlaIV GGNNCC 1 cut(s) 405
NmuCI GTSAC 2 cut(s) 35, 417
PagI TCATGA 2 cut(s) 42, 84
PfeI GAWTC 1 cut(s) 394
PkrI GCNGC 2 cut(s) 64, 139
PpuMI RGGWCCY 1 cut(s) 404
Psp124BI GAGCTC 1 cut(s) 218
Psp5II RGGWCCY 1 cut(s) 404
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 405
PspPI GGNCC 1 cut(s) 404
PspPPI RGGWCCY 1 cut(s) 404
PsuI RGATCY 1 cut(s) 259
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 299
SacI GAGCTC 1 cut(s) 218
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 2 cut(s) 63, 138
Sau3AI GATC 4 cut(s) 244, 259, 303, 316
Sau96I GGNCC 1 cut(s) 404
ScrFI CCNGG 1 cut(s) 93
SduI GDGCHC 2 cut(s) 25, 218
SetI ASST 5 cut(s) 42, 163, 174, 218, 339
SinI GGWCC 1 cut(s) 404
SmiMI CAYNNNNRTG 1 cut(s) 299
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 1 cut(s) 28
SspI AATATT 1 cut(s) 412
SstI GAGCTC 1 cut(s) 218
StyD4I CCNGG 1 cut(s) 91
StyI CCWWGG 1 cut(s) 263
TaaI ACNGT 1 cut(s) 325
TaiI ACGT 1 cut(s) 42
TaqI TCGA 1 cut(s) 32
TasI AATT 1 cut(s) 28
TatI WGTACW 1 cut(s) 183
TfiI GAWTC 1 cut(s) 394
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TscAI CASTG 1 cut(s) 330
TseFI GTSAC 2 cut(s) 35, 417
TseI GCWGC 2 cut(s) 62, 137
Tsp45I GTSAC 2 cut(s) 35, 417
TspDTI ATGAA 4 cut(s) 44, 73, 94, 101
TspRI CASTG 1 cut(s) 330
VpaK11BI GGWCC 1 cut(s) 404
XapI RAATTY 1 cut(s) 28
ZraI GACGTC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.