Rroxscaffold_6G00398540

Protein of unknown function (DUF563)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0018886
Physical Location & Seq
Forward (+)
20388480 .. 20389188
709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00398540.1

Sequence Viewer

Length: 624 bp
ATGATTGGTGGGCCACAAAATATGGAGACATATGGAGACATTCTTTCCCAACTATCAGATTATCCTCCTATAGATTTTGTTGGAGATATGAAAACTCATTGCTTCCCTGAGGCCAATGTTGGTCTGAGAATTCATGATGAGCCTAGTTTAAATTCATCATTGAACAAGAAGCACAAGATCGACAAACTTTCTGCTTCTGTTTCTCCAACATGGAACATATCAATAAAAAGCAAGGCAGAAGTGGAAGCACCAAAATTGAGGAATTCAAAATTGGTTATCATATCTAGAAATGGATCAAGAGCGACAACTAATGAGAACTTCTTGGTGAAGATGGTTGAGAAAATTGGTTTTCAAGTTCAAGTTTTGAGACCCGAGCCAACAACTGAATTAGCAAAGATTTACTGGGATCTAAATTCAAGTGATGTCATGATTGGAGTTCATGGTGCTGCCATGACACATCTTCTGTTTATGAAGCCTGGATGGGCAGCTGAGGCCTATTATGGAGAACCTGCAAGGAAGCTTGGCCTAAAGTACACTGGCTATCACATTCTTACCAAGGAGAGCTCATTCTATTACTGGCATATAATAAAGATGATCCTATTCTTAGAGATCCAACGAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
DUF563

Protein Analysis

207

Amino Acids

23.47

Weight (kDa)

8.51

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 72 - 160 5.3e-13 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018886)

Species Orthologous Gene IDs
malus_domestica MD14G1074200.v1.1
pyrus_communis pycom14g06330
rosa_chinensis RchiOBHm_Chr3g0483211
rosa_laevigata RLG00000023296 RLG00000023298
rosa_multiflora Rmu_co8194502.1_g000001 Rmu_sc0007550.1_g000001
rosa_roxburghii Rroxscaffold_6G00398540
rosa_samantha Rh3BG290200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 517
AclWI GGATC 4 cut(s) 301, 414, 589, 604
AcsI RAATTY 4 cut(s) 129, 151, 262, 412
AfaI GTAC 1 cut(s) 533
AgsI TTSAA 5 cut(s) 163, 267, 353, 359, 417
AjnI CCWGG 1 cut(s) 475
AjuI GAANNNNNNNTTGG 2 cut(s) 254, 286
AluBI AGCT 3 cut(s) 488, 520, 564
AluI AGCT 3 cut(s) 488, 520, 564
Alw21I GWGCWC 1 cut(s) 566
Alw26I GTCTC 3 cut(s) 20, 30, 361
AlwI GGATC 4 cut(s) 301, 414, 589, 604
Ama87I CYCGRG 1 cut(s) 371
AoxI GGCC 4 cut(s) 11, 111, 492, 523
ApeKI GCWGC 2 cut(s) 446, 485
ApoI RAATTY 4 cut(s) 129, 151, 262, 412
AspS9I GGNCC 1 cut(s) 11
AsuHPI GGTGA 1 cut(s) 337
AvaI CYCGRG 1 cut(s) 371
AxyI CCTNAGG 1 cut(s) 108
BanII GRGCYC 1 cut(s) 566
Bbv12I GWGCWC 1 cut(s) 566
BbvCI CCTCAGC 1 cut(s) 489
BbvI GCAGC 2 cut(s) 433, 497
BccI CCATC 2 cut(s) 325, 474
BciT130I CCWGG 1 cut(s) 477
BcoDI GTCTC 3 cut(s) 20, 30, 361
BfaI CTAG 2 cut(s) 144, 285
BfmI CTRYAG 1 cut(s) 69
BfuAI ACCTGC 1 cut(s) 517
BisI GCNGC 2 cut(s) 447, 486
BlsI GCNGC 2 cut(s) 448, 487
Bme1390I CCNGG 1 cut(s) 477
BmeT110I CYCGRG 1 cut(s) 371
BmgT120I GGNCC 1 cut(s) 11
BmrFI CCNGG 1 cut(s) 477
BmrI ACTGGG 1 cut(s) 412
BmuI ACTGGG 1 cut(s) 412
Bpu10I CCTNAGC 1 cut(s) 489
BsaI GGTCTC 1 cut(s) 361
BsaJI CCNNGG 1 cut(s) 555
Bse1I ACTGG 3 cut(s) 407, 541, 581
Bse21I CCTNAGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 97
BseBI CCWGG 1 cut(s) 477
BseDI CCNNGG 1 cut(s) 555
BseGI GGATG 1 cut(s) 485
BseMI GCAATG 1 cut(s) 97
BseMII CTCAG 3 cut(s) 99, 116, 480
BseNI ACTGG 3 cut(s) 407, 541, 581
BseXI GCAGC 2 cut(s) 433, 497
BshFI GGCC 4 cut(s) 13, 113, 494, 525
BsiHKAI GWGCWC 1 cut(s) 566
BsiHKCI CYCGRG 1 cut(s) 371
BsmAI GTCTC 3 cut(s) 20, 30, 361
BsnI GGCC 4 cut(s) 13, 113, 494, 525
Bso31I GGTCTC 1 cut(s) 361
BsoBI CYCGRG 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 566
Bsp143I GATC 5 cut(s) 177, 293, 406, 594, 609
BspANI GGCC 4 cut(s) 13, 113, 494, 525
BspCNI CTCAG 3 cut(s) 100, 117, 481
BspHI TCATGA 2 cut(s) 133, 426
BspMI ACCTGC 1 cut(s) 517
BspPI GGATC 4 cut(s) 301, 414, 589, 604
BspTNI GGTCTC 1 cut(s) 361
BsrDI GCAATG 1 cut(s) 97
BsrI ACTGG 3 cut(s) 407, 541, 581
BssECI CCNNGG 1 cut(s) 555
BssMI GATC 5 cut(s) 177, 293, 406, 594, 609
BssT1I CCWWGG 1 cut(s) 555
Bst2UI CCWGG 1 cut(s) 477
BstDEI CTNAG 4 cut(s) 108, 125, 489, 604
BstF5I GGATG 1 cut(s) 485
BstKTI GATC 5 cut(s) 180, 296, 409, 597, 612
BstMAI GTCTC 3 cut(s) 20, 30, 361
BstMBI GATC 5 cut(s) 177, 293, 406, 594, 609
BstMWI GCNNNNNNNGC 1 cut(s) 491
BstNI CCWGG 1 cut(s) 477
BstSCI CCNGG 1 cut(s) 475
BstSFI CTRYAG 1 cut(s) 69
BstV1I GCAGC 2 cut(s) 433, 497
BstX2I RGATCY 2 cut(s) 406, 609
BstYI RGATCY 2 cut(s) 406, 609
Bsu36I CCTNAGG 1 cut(s) 108
BsuRI GGCC 4 cut(s) 13, 113, 494, 525
BtsCI GGATG 1 cut(s) 485
BtsIMutI CAGTG 1 cut(s) 534
BveI ACCTGC 1 cut(s) 517
CciI TCATGA 2 cut(s) 133, 426
Cfr13I GGNCC 1 cut(s) 11
Csp6I GTAC 1 cut(s) 532
CviAII CATG 5 cut(s) 134, 210, 427, 440, 451
CviQI GTAC 1 cut(s) 532
DdeI CTNAG 4 cut(s) 108, 125, 489, 604
DpnI GATC 5 cut(s) 179, 295, 408, 596, 611
DpnII GATC 5 cut(s) 177, 293, 406, 594, 609
DraI TTTAAA 1 cut(s) 150
Ecl136II GAGCTC 1 cut(s) 564
Eco130I CCWWGG 1 cut(s) 555
Eco147I AGGCCT 1 cut(s) 494
Eco24I GRGCYC 1 cut(s) 566
Eco31I GGTCTC 1 cut(s) 361
Eco53kI GAGCTC 1 cut(s) 564
Eco81I CCTNAGG 1 cut(s) 108
Eco88I CYCGRG 1 cut(s) 371
EcoICRI GAGCTC 1 cut(s) 564
EcoRI GAATTC 2 cut(s) 129, 262
EcoRII CCWGG 1 cut(s) 475
EcoT14I CCWWGG 1 cut(s) 555
EcoT38I GRGCYC 1 cut(s) 566
ErhI CCWWGG 1 cut(s) 555
FaeI CATG 5 cut(s) 137, 213, 430, 443, 454
FatI CATG 5 cut(s) 133, 209, 426, 439, 450
FauNDI CATATG 1 cut(s) 31
Fnu4HI GCNGC 2 cut(s) 447, 486
FokI GGATG 1 cut(s) 492
FriOI GRGCYC 1 cut(s) 566
Fsp4HI GCNGC 2 cut(s) 447, 486
FspBI CTAG 2 cut(s) 144, 285
GluI GCNGC 2 cut(s) 447, 486
HaeIII GGCC 4 cut(s) 13, 113, 494, 525
Hin1II CATG 5 cut(s) 137, 213, 430, 443, 454
HindIII AAGCTT 1 cut(s) 518
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 1 cut(s) 534
Hpy188I TCNGA 2 cut(s) 58, 126
Hpy188III TCNNGA 4 cut(s) 134, 285, 297, 427
Hpy8I GTNNAC 1 cut(s) 534
HpyCH4V TGCA 1 cut(s) 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 491
HpyF3I CTNAG 4 cut(s) 108, 125, 489, 604
Hsp92II CATG 5 cut(s) 137, 213, 430, 443, 454
Kzo9I GATC 5 cut(s) 177, 293, 406, 594, 609
LpnPI CCDG 7 cut(s) 120, 388, 462, 489, 522, 522, 562
Lsp1109I GCAGC 2 cut(s) 433, 497
MaeI CTAG 2 cut(s) 144, 285
MalI GATC 5 cut(s) 179, 295, 408, 596, 611
MboI GATC 5 cut(s) 177, 293, 406, 594, 609
MboII GAAGA 2 cut(s) 340, 452
MflI RGATCY 2 cut(s) 406, 609
MhlI GDGCHC 1 cut(s) 566
MluCI AATT 8 cut(s) 129, 151, 254, 262, 269, 342, 386, 412
MmeI TCCRAC 2 cut(s) 61, 230
MnlI CCTC 4 cut(s) 75, 103, 252, 484
MseI TTAA 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 488
MspR9I CCNGG 1 cut(s) 477
MvaI CCWGG 1 cut(s) 477
MwoI GCNNNNNNNGC 1 cut(s) 491
NdeI CATATG 1 cut(s) 31
NdeII GATC 5 cut(s) 177, 293, 406, 594, 609
NlaIII CATG 5 cut(s) 137, 213, 430, 443, 454
PagI TCATGA 2 cut(s) 133, 426
PceI AGGCCT 1 cut(s) 494
PkrI GCNGC 2 cut(s) 448, 487
Psp124BI GAGCTC 1 cut(s) 566
Psp6I CCWGG 1 cut(s) 475
PspGI CCWGG 1 cut(s) 475
PspPI GGNCC 1 cut(s) 11
PsuI RGATCY 2 cut(s) 406, 609
PvuII CAGCTG 1 cut(s) 488
RsaI GTAC 1 cut(s) 533
RsaNI GTAC 1 cut(s) 532
SacI GAGCTC 1 cut(s) 566
SaqAI TTAA 1 cut(s) 149
SatI GCNGC 2 cut(s) 447, 486
Sau3AI GATC 5 cut(s) 177, 293, 406, 594, 609
Sau96I GGNCC 1 cut(s) 11
ScrFI CCNGG 1 cut(s) 477
SduI GDGCHC 1 cut(s) 566
SetI ASST 4 cut(s) 490, 511, 522, 566
SfcI CTRYAG 1 cut(s) 69
Sse9I AATT 8 cut(s) 129, 151, 254, 262, 269, 342, 386, 412
SseBI AGGCCT 1 cut(s) 494
SspMI CTAG 2 cut(s) 144, 285
SstI GAGCTC 1 cut(s) 566
StuI AGGCCT 1 cut(s) 494
StyD4I CCNGG 1 cut(s) 475
StyI CCWWGG 1 cut(s) 555
TaqI TCGA 1 cut(s) 180
TasI AATT 8 cut(s) 129, 151, 254, 262, 269, 342, 386, 412
TatI WGTACW 1 cut(s) 531
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TscAI CASTG 1 cut(s) 541
TseI GCWGC 2 cut(s) 446, 485
TspDTI ATGAA 5 cut(s) 104, 122, 144, 428, 485
TspRI CASTG 1 cut(s) 541
XapI RAATTY 4 cut(s) 129, 151, 262, 412
XbaI TCTAGA 1 cut(s) 284
XspI CTAG 2 cut(s) 144, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.