RchiOBHm_Chr3g0487681

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0018585
Physical Location & Seq
Reverse (-)
34930242 .. 34932894
2653 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45211

Sequence Viewer

Length: 990 bp
ATGGCGAGTGCAGAACCCTTACGTTCGAATACGGCCGCCGTAGAATTGCGCCGTCTGACAGTGTTGTCGGTGCTGAGCGAGTGCGTCCGGATACTCAAAGCAGATTATCTACTGCTGCTATTTCTCTCCCTTATCTTCCTCTTCCCAAAATGTTTTTCCTCCATATCCCACCCGACCCGCCAAAGCCTCCTCAAAGCCGAGCATCCCTTTCCTGATCAATACCAGTCGGAGACTCTTCTTGCTCTTGCTTTCTCATTCTTCACCCACATCTTTTCCTTGTGGGGATTTCTCTATCATCTCTTGGGTCTCTGGTCAATCACATACGTCGTATTTCAGTGCTTTTATAGCCGTAGCCGTTTCATCAAATGCGAGACAATATACGCCATGTTTAAATCTTTGTGTGTCTCCTTTTTCCCTCTGCTAGGTGTGATCCTAATCTTTGTTCCCAACATTGTTAGTTTGTTTAATCTGGTTCACTTTGGCCAAATTTTGTTTAAGGGGCTTAGAGGAACTGAGAAAAGTGACATAGATATCTTTTATGTTGTTTTAGTGCTCGGTTGTCTTAATCTCCACTTAGAGTGGAACCTTGCACCATCTATTATTGTAGTAGAATCGGGCGGACTGCTGGAGTCTTTGAGAAGAAGCAGCTTATTAATGAAGGGAAAGAAAATGTTGGCTTTGTCTATATTATTGGTCTATGGTAGTTTTGCCATTATTTTAGGACTCTTTAGTAGTTGGATTCTGGAAGTCCAGTTGAGTTTGAATGATGATCTGAGTCATGGTGGTTGGTGGAAGATGGTGAATTGGGAATTTCTGTTTCGAATTTTACCAGCATCAGTTTTATTCATGCTGGTTTTGTTGTTCAACATGGTGACCAATATCGTTTTCTATGTTTACTGCATCAAGCCAGAAGATAATGAGAAAGAAAAAAGTTGTGAATCAGTCTCAACTATGAAGTATGACCGACTTGTGGACCATGCAGCTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

329

Amino Acids

37.75

Weight (kDa)

8.07

Isoelectric Point (pI)

47.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018585)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0487681
rosa_laevigata RLG00000021508 RLG00000022978
rosa_multiflora Rmu_sc0002995.1_g000016
rosa_rugosa Rorug03G0235500.1 Rorug03G0235600
rosa_samantha Rh2AG580500 Rh2DG601900 Rh3CG318300
rosa_wichuraiana Rw3G025150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 64
AccIII TCCGGA 1 cut(s) 87
AciI CCGC 3 cut(s) 36, 178, 618
AclWI GGATC 1 cut(s) 424
AcoI YGGCCR 2 cut(s) 33, 481
AcsI RAATTY 3 cut(s) 486, 809, 822
AfiI CCNNNNNNNGG 2 cut(s) 422, 970
AgsI TTSAA 2 cut(s) 763, 865
AjuI GAANNNNNNNTTGG 4 cut(s) 139, 171, 869, 901
AluBI AGCT 2 cut(s) 648, 983
AluI AGCT 2 cut(s) 648, 983
Alw21I GWGCWC 1 cut(s) 555
Alw26I GTCTC 5 cut(s) 224, 311, 365, 409, 949
AlwI GGATC 1 cut(s) 424
Aor13HI TCCGGA 1 cut(s) 87
AoxI GGCC 2 cut(s) 33, 481
ApeKI GCWGC 3 cut(s) 115, 645, 980
ApoI RAATTY 3 cut(s) 486, 809, 822
AseI ATTAAT 1 cut(s) 653
AspLEI GCGC 1 cut(s) 51
AspS9I GGNCC 1 cut(s) 973
AsuHPI GGTGA 3 cut(s) 253, 811, 883
AsuII TTCGAA 2 cut(s) 26, 820
AvaII GGWCC 1 cut(s) 973
BalI TGGCCA 1 cut(s) 483
Bbv12I GWGCWC 1 cut(s) 555
BbvI GCAGC 2 cut(s) 102, 657
BccI CCATC 2 cut(s) 601, 790
BceAI ACGGC 5 cut(s) 23, 36, 48, 333, 339
BciVI GTATCC 1 cut(s) 84
BclI TGATCA 1 cut(s) 214
BcoDI GTCTC 5 cut(s) 224, 311, 365, 409, 949
BfaI CTAG 1 cut(s) 422
BfuI GTATCC 1 cut(s) 84
BisI GCNGC 4 cut(s) 36, 116, 646, 981
BlpI GCTNAGC 1 cut(s) 74
BlsI GCNGC 4 cut(s) 37, 117, 647, 982
Bme18I GGWCC 1 cut(s) 973
BmgT120I GGNCC 1 cut(s) 973
BmiI GGNNCC 1 cut(s) 584
BmsI GCATC 3 cut(s) 211, 842, 909
BpmI CTGGAG 1 cut(s) 647
Bpu1102I GCTNAGC 1 cut(s) 74
Bpu14I TTCGAA 2 cut(s) 26, 820
BsaBI GATNNNNATC 1 cut(s) 434
BsaI GGTCTC 1 cut(s) 311
BsaWI WCCGGW 1 cut(s) 87
Bsc4I CCNNNNNNNGG 2 cut(s) 422, 970
Bse1I ACTGG 2 cut(s) 223, 751
Bse8I GATNNNNATC 1 cut(s) 434
BseAI TCCGGA 1 cut(s) 87
BseGI GGATG 1 cut(s) 202
BseJI GATNNNNATC 1 cut(s) 434
BseLI CCNNNNNNNGG 2 cut(s) 422, 970
BseMII CTCAG 3 cut(s) 65, 504, 764
BseNI ACTGG 2 cut(s) 223, 751
BseRI GAGGAG 1 cut(s) 179
BseX3I CGGCCG 1 cut(s) 33
BseXI GCAGC 2 cut(s) 102, 657
BsgI GTGCAG 1 cut(s) 30
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 2 cut(s) 35, 483
BsiEI CGRYCG 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 555
BsiSI CCGG 1 cut(s) 88
BslI CCNNNNNNNGG 2 cut(s) 422, 970
BsmAI GTCTC 5 cut(s) 224, 311, 365, 409, 949
BsnI GGCC 2 cut(s) 35, 483
Bso31I GGTCTC 1 cut(s) 311
Bsp119I TTCGAA 2 cut(s) 26, 820
Bsp1286I GDGCHC 1 cut(s) 555
Bsp13I TCCGGA 1 cut(s) 87
Bsp143I GATC 3 cut(s) 214, 429, 769
Bsp1720I GCTNAGC 1 cut(s) 74
BspACI CCGC 3 cut(s) 36, 178, 618
BspANI GGCC 2 cut(s) 35, 483
BspCNI CTCAG 3 cut(s) 66, 505, 765
BspEI TCCGGA 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 584
BspPI GGATC 1 cut(s) 424
BspT104I TTCGAA 2 cut(s) 26, 820
BspTNI GGTCTC 1 cut(s) 311
BsrI ACTGG 2 cut(s) 223, 751
BssMI GATC 3 cut(s) 214, 429, 769
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 2 cut(s) 146, 240
BstBI TTCGAA 2 cut(s) 26, 820
BstDEI CTNAG 5 cut(s) 74, 503, 513, 574, 773
BstEII GGTNACC 1 cut(s) 871
BstENI CCTNNNNNAGG 1 cut(s) 420
BstF5I GGATG 1 cut(s) 202
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 3 cut(s) 217, 432, 772
BstMAI GTCTC 5 cut(s) 224, 311, 365, 409, 949
BstMBI GATC 3 cut(s) 214, 429, 769
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 345
BstPI GGTNACC 1 cut(s) 871
BstV1I GCAGC 2 cut(s) 102, 657
BstZI CGGCCG 1 cut(s) 33
BsuI GTATCC 1 cut(s) 84
BsuRI GGCC 2 cut(s) 35, 483
BtsCI GGATG 1 cut(s) 202
BtsIMutI CAGTG 2 cut(s) 66, 341
CfoI GCGC 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 973
CseI GACGC 1 cut(s) 73
CviAII CATG 5 cut(s) 385, 779, 847, 868, 977
DdeI CTNAG 5 cut(s) 74, 503, 513, 574, 773
DpnI GATC 3 cut(s) 216, 431, 771
DpnII GATC 3 cut(s) 214, 429, 769
DraI TTTAAA 1 cut(s) 391
DrdI GACNNNNNNGTC 1 cut(s) 64
DseDI GACNNNNNNGTC 1 cut(s) 64
EaeI YGGCCR 2 cut(s) 33, 481
EagI CGGCCG 1 cut(s) 33
Eam1104I CTCTTC 2 cut(s) 146, 240
EarI CTCTTC 2 cut(s) 146, 240
EciI GGCGGA 1 cut(s) 633
EclXI CGGCCG 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 311
Eco32I GATATC 1 cut(s) 532
Eco47I GGWCC 1 cut(s) 973
Eco52I CGGCCG 1 cut(s) 33
Eco91I GGTNACC 1 cut(s) 871
EcoNI CCTNNNNNAGG 1 cut(s) 420
EcoO65I GGTNACC 1 cut(s) 871
EcoRV GATATC 1 cut(s) 532
FaeI CATG 5 cut(s) 388, 782, 850, 871, 980
FatI CATG 5 cut(s) 384, 778, 846, 867, 976
FauI CCCGC 1 cut(s) 185
FbaI TGATCA 1 cut(s) 214
Fnu4HI GCNGC 4 cut(s) 36, 116, 646, 981
FokI GGATG 1 cut(s) 189
Fsp4HI GCNGC 4 cut(s) 36, 116, 646, 981
FspBI CTAG 1 cut(s) 422
GlaI GCGC 1 cut(s) 50
GluI GCNGC 4 cut(s) 36, 116, 646, 981
GsuI CTGGAG 1 cut(s) 647
HaeIII GGCC 2 cut(s) 35, 483
HapII CCGG 1 cut(s) 88
HgaI GACGC 1 cut(s) 73
HhaI GCGC 1 cut(s) 51
Hin1II CATG 5 cut(s) 388, 782, 850, 871, 980
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HinfI GANTC 7 cut(s) 232, 611, 629, 723, 739, 775, 938
HpaII CCGG 1 cut(s) 88
HphI GGTGA 3 cut(s) 253, 811, 883
Hpy166II GTNNAC 3 cut(s) 475, 895, 973
Hpy188I TCNGA 3 cut(s) 57, 229, 774
Hpy188III TCNNGA 3 cut(s) 88, 212, 743
Hpy8I GTNNAC 3 cut(s) 475, 895, 973
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 1 cut(s) 652
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4IV ACGT 2 cut(s) 22, 324
HpyCH4V TGCA 4 cut(s) 11, 590, 900, 980
HpyF10VI GCNNNNNNNGC 1 cut(s) 345
HpyF3I CTNAG 5 cut(s) 74, 503, 513, 574, 773
HpySE526I ACGT 2 cut(s) 22, 324
Hsp92II CATG 5 cut(s) 388, 782, 850, 871, 980
HspAI GCGC 1 cut(s) 49
Kpn2I TCCGGA 1 cut(s) 87
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 3 cut(s) 214, 429, 769
Lsp1109I GCAGC 2 cut(s) 102, 657
LweI GCATC 3 cut(s) 211, 842, 909
MaeI CTAG 1 cut(s) 422
MaeII ACGT 2 cut(s) 22, 324
MaeIII GTNAC 2 cut(s) 521, 871
MalI GATC 3 cut(s) 216, 431, 771
MboI GATC 3 cut(s) 214, 429, 769
MboII GAAGA 7 cut(s) 127, 133, 227, 250, 651, 805, 923
MhlI GDGCHC 1 cut(s) 555
MlsI TGGCCA 1 cut(s) 483
MluCI AATT 5 cut(s) 44, 486, 802, 809, 822
MluNI TGGCCA 1 cut(s) 483
MlyI GAGTC 4 cut(s) 226, 638, 717, 784
MmeI TCCRAC 2 cut(s) 207, 716
MnlI CCTC 6 cut(s) 149, 169, 197, 200, 426, 500
Mox20I TGGCCA 1 cut(s) 483
MroI TCCGGA 1 cut(s) 87
MscI TGGCCA 1 cut(s) 483
MseI TTAA 5 cut(s) 390, 465, 495, 564, 653
Msp20I TGGCCA 1 cut(s) 483
MspI CCGG 1 cut(s) 88
MwoI GCNNNNNNNGC 1 cut(s) 345
NdeII GATC 3 cut(s) 214, 429, 769
NlaIII CATG 5 cut(s) 388, 782, 850, 871, 980
NlaIV GGNNCC 1 cut(s) 584
NmeAIII GCCGAG 1 cut(s) 223
NmuCI GTSAC 2 cut(s) 521, 871
NspV TTCGAA 2 cut(s) 26, 820
PfeI GAWTC 3 cut(s) 611, 739, 938
PkrI GCNGC 4 cut(s) 37, 117, 647, 982
PleI GAGTC 4 cut(s) 226, 637, 717, 783
PpsI GAGTC 4 cut(s) 226, 637, 717, 783
PshBI ATTAAT 1 cut(s) 653
PspEI GGTNACC 1 cut(s) 871
PspN4I GGNNCC 1 cut(s) 584
PspPI GGNCC 1 cut(s) 973
SaqAI TTAA 5 cut(s) 390, 465, 495, 564, 653
SatI GCNGC 4 cut(s) 36, 116, 646, 981
Sau3AI GATC 3 cut(s) 214, 429, 769
Sau96I GGNCC 1 cut(s) 973
SchI GAGTC 4 cut(s) 226, 638, 717, 784
SduI GDGCHC 1 cut(s) 555
SetI ASST 6 cut(s) 25, 327, 427, 588, 650, 985
SfaNI GCATC 3 cut(s) 211, 842, 909
SfuI TTCGAA 2 cut(s) 26, 820
SinI GGWCC 1 cut(s) 973
Sse9I AATT 5 cut(s) 44, 486, 802, 809, 822
SsiI CCGC 3 cut(s) 36, 178, 618
SspMI CTAG 1 cut(s) 422
TaaI ACNGT 1 cut(s) 61
TaiI ACGT 2 cut(s) 25, 327
TaqI TCGA 2 cut(s) 26, 820
TaqII GACCGA 1 cut(s) 978
TasI AATT 5 cut(s) 44, 486, 802, 809, 822
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 3 cut(s) 611, 739, 938
Tru1I TTAA 5 cut(s) 390, 465, 495, 564, 653
Tru9I TTAA 5 cut(s) 390, 465, 495, 564, 653
TscAI CASTG 2 cut(s) 66, 341
TseFI GTSAC 2 cut(s) 521, 871
TseI GCWGC 3 cut(s) 115, 645, 980
Tsp45I GTSAC 2 cut(s) 521, 871
TspDTI ATGAA 4 cut(s) 349, 671, 835, 968
TspRI CASTG 2 cut(s) 66, 341
VpaK11BI GGWCC 1 cut(s) 973
VspI ATTAAT 1 cut(s) 653
XagI CCTNNNNNAGG 1 cut(s) 420
XapI RAATTY 3 cut(s) 486, 809, 822
XspI CTAG 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.