Rw3G025150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0018585
Physical Location & Seq
Forward (+)
33073090 .. 33078754
5665 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G025150.1

Sequence Viewer

Length: 1035 bp
ATGTACTTTTGTGGAAAAACCCTCCTCCATCACATTCACAAATCACAAACCATGGCAAGTTCGAATACGGCCGCCGTAGAATTGCGCCGTCTGACAGTGTTGCCGGTGCTGAGCGAGTGCGTCCGGATACTCAAAGCAGATTATCTACTGCTTCTATTTCTCTCCCTTATCTTCCTCTTCCCAAAATGTTTTTCCTCCATATCCCACCCGACCCGCCAAAGCCTCCTCAAAGCCAAGCATCCCTTTCCTGATCAATACCAGCCGGAGACTCTTCTTGCTCTTGCTTTCTCATTCTTCACCCACATCTTTTCCTTGTGGGGATTTCTCTATTATCTCTTGGGTCTCTGGTCAATCACATACGTCGTATTTCACTGCTTTTATAGCCGTAGCCGTTCCATCAAATGCGGTCCGCTCGATACAATATACGCCATGTTTAAATCTTTGTGTATCTCCTTTTTCCCTCTGCTAGGTGTGATCCTAATCTTTGTTCCCAACATTGTTAGTTTGTTTAATCTGGTTCACTTTGGCCAAATTTTGTTTAAGGGGCTTAGAGGAACTGAGAAAAGTGACATAGATATCTTTTATGTTGTTTTAGTGCTCGGTTGTCTTAATCTCCACTTAGAGTGGAACCTTGCACCATCTATTATTGTAGTAGAATCCGGCGGACTGCTGGAGTCTTTGAGAAGAAGCAGCTTATTAATGAAGGGAAAGAAAATGTTGGCTTTGTCTATATTATTGGTCTATGGTAGTTTTGCCATTATTTTAGGACTCTTTAGTAGTTGGATTCTGGAAGTCCAGTTGAGTTTGAATGAGGATCTGAGTCATGGTGGTTGGTGGAAGATGGTGAATTCGGAATTTCTGTTTCGAATTTTACCAGCTTCAGTTTTATTCATGCTGGTTTTGTTGTTCAACATGGTGACCAATATCGTTTTCTATGTTTACTGCATCAAGCCAGAAGATAATGAGAAAGAAAAAAGTTGTGAATCAGTCTCAACTATGAAGTATGACCGACTTGTGGACCATGCAGCTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

344

Amino Acids

39.39

Weight (kDa)

8.77

Isoelectric Point (pI)

50.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018585)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0487681
rosa_laevigata RLG00000021508 RLG00000022978
rosa_multiflora Rmu_sc0002995.1_g000016
rosa_rugosa Rorug03G0235500.1 Rorug03G0235600
rosa_samantha Rh2AG580500 Rh2DG601900 Rh3CG318300
rosa_wichuraiana Rw3G025150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 412
AccIII TCCGGA 1 cut(s) 123
AciI CCGC 5 cut(s) 72, 214, 405, 410, 663
AclWI GGATC 2 cut(s) 469, 822
AcoI YGGCCR 2 cut(s) 69, 526
AcsI RAATTY 4 cut(s) 531, 847, 854, 867
AcuI CTGAAG 1 cut(s) 864
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 467, 1015
AgsI TTSAA 2 cut(s) 808, 910
AjuI GAANNNNNNNTTGG 4 cut(s) 175, 207, 914, 946
AluBI AGCT 3 cut(s) 693, 878, 1028
AluI AGCT 3 cut(s) 693, 878, 1028
Alw21I GWGCWC 1 cut(s) 600
Alw26I GTCTC 3 cut(s) 260, 347, 994
AlwI GGATC 2 cut(s) 469, 822
Aor13HI TCCGGA 1 cut(s) 123
AoxI GGCC 2 cut(s) 69, 526
ApeKI GCWGC 2 cut(s) 690, 1025
ApoI RAATTY 4 cut(s) 531, 847, 854, 867
AseI ATTAAT 1 cut(s) 698
AspLEI GCGC 1 cut(s) 87
AspS9I GGNCC 2 cut(s) 407, 1018
AsuHPI GGTGA 3 cut(s) 289, 856, 928
AsuII TTCGAA 2 cut(s) 62, 865
AvaII GGWCC 2 cut(s) 407, 1018
BalI TGGCCA 1 cut(s) 528
Bbv12I GWGCWC 1 cut(s) 600
BbvI GCAGC 1 cut(s) 702
BccI CCATC 4 cut(s) 36, 404, 646, 835
BceAI ACGGC 5 cut(s) 59, 72, 84, 369, 375
BciVI GTATCC 1 cut(s) 120
BclI TGATCA 1 cut(s) 250
BcoDI GTCTC 3 cut(s) 260, 347, 994
BfaI CTAG 1 cut(s) 467
BfuI GTATCC 1 cut(s) 120
BisI GCNGC 3 cut(s) 72, 691, 1026
BlpI GCTNAGC 1 cut(s) 110
BlsI GCNGC 3 cut(s) 73, 692, 1027
Bme18I GGWCC 2 cut(s) 407, 1018
BmgT120I GGNCC 2 cut(s) 407, 1018
BmiI GGNNCC 1 cut(s) 629
BmsI GCATC 2 cut(s) 247, 954
BpmI CTGGAG 1 cut(s) 692
Bpu1102I GCTNAGC 1 cut(s) 110
Bpu14I TTCGAA 2 cut(s) 62, 865
BsaBI GATNNNNATC 1 cut(s) 479
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 51
BsaWI WCCGGW 1 cut(s) 123
Bsc4I CCNNNNNNNGG 2 cut(s) 467, 1015
Bse118I RCCGGY 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 796
Bse8I GATNNNNATC 1 cut(s) 479
BseAI TCCGGA 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 238
BseJI GATNNNNATC 1 cut(s) 479
BseLI CCNNNNNNNGG 2 cut(s) 467, 1015
BseMII CTCAG 3 cut(s) 101, 549, 809
BseNI ACTGG 1 cut(s) 796
BseRI GAGGAG 2 cut(s) 14, 215
BseX3I CGGCCG 1 cut(s) 69
BseXI GCAGC 1 cut(s) 702
Bsh1285I CGRYCG 1 cut(s) 72
BshFI GGCC 2 cut(s) 71, 528
BsiEI CGRYCG 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 600
BsiSI CCGG 4 cut(s) 104, 124, 263, 660
BslI CCNNNNNNNGG 2 cut(s) 467, 1015
BsmAI GTCTC 3 cut(s) 260, 347, 994
BsnI GGCC 2 cut(s) 71, 528
Bso31I GGTCTC 1 cut(s) 347
Bsp119I TTCGAA 2 cut(s) 62, 865
Bsp1286I GDGCHC 1 cut(s) 600
Bsp13I TCCGGA 1 cut(s) 123
Bsp143I GATC 3 cut(s) 250, 474, 814
Bsp1720I GCTNAGC 1 cut(s) 110
Bsp19I CCATGG 1 cut(s) 51
BspACI CCGC 5 cut(s) 72, 214, 405, 410, 663
BspANI GGCC 2 cut(s) 71, 528
BspCNI CTCAG 3 cut(s) 102, 550, 810
BspEI TCCGGA 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 629
BspPI GGATC 2 cut(s) 469, 822
BspT104I TTCGAA 2 cut(s) 62, 865
BspTNI GGTCTC 1 cut(s) 347
BsrBI CCGCTC 1 cut(s) 412
BsrFI RCCGGY 1 cut(s) 103
BsrI ACTGG 1 cut(s) 796
BssAI RCCGGY 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 3 cut(s) 250, 474, 814
BssT1I CCWWGG 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 2 cut(s) 182, 276
BstBI TTCGAA 2 cut(s) 62, 865
BstDEI CTNAG 5 cut(s) 110, 548, 558, 619, 818
BstDSI CCRYGG 1 cut(s) 51
BstEII GGTNACC 1 cut(s) 916
BstENI CCTNNNNNAGG 1 cut(s) 465
BstF5I GGATG 1 cut(s) 238
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 3 cut(s) 253, 477, 817
BstMAI GTCTC 3 cut(s) 260, 347, 994
BstMBI GATC 3 cut(s) 250, 474, 814
BstMCI CGRYCG 1 cut(s) 72
BstMWI GCNNNNNNNGC 1 cut(s) 381
BstPI GGTNACC 1 cut(s) 916
BstV1I GCAGC 1 cut(s) 702
BstX2I RGATCY 1 cut(s) 814
BstYI RGATCY 1 cut(s) 814
BstZI CGGCCG 1 cut(s) 69
BsuI GTATCC 1 cut(s) 120
BsuRI GGCC 2 cut(s) 71, 528
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 1 cut(s) 238
BtsI GCAGTG 1 cut(s) 370
BtsIMutI CAGTG 2 cut(s) 102, 370
CfoI GCGC 1 cut(s) 87
Cfr10I RCCGGY 1 cut(s) 103
Cfr13I GGNCC 2 cut(s) 407, 1018
CpoI CGGWCCG 1 cut(s) 407
CseI GACGC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 4
CspI CGGWCCG 1 cut(s) 407
CviAII CATG 6 cut(s) 52, 430, 824, 892, 913, 1022
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 5 cut(s) 110, 548, 558, 619, 818
DpnI GATC 3 cut(s) 252, 476, 816
DpnII GATC 3 cut(s) 250, 474, 814
DraI TTTAAA 1 cut(s) 436
EaeI YGGCCR 2 cut(s) 69, 526
EagI CGGCCG 1 cut(s) 69
Eam1104I CTCTTC 2 cut(s) 182, 276
EarI CTCTTC 2 cut(s) 182, 276
EciI GGCGGA 1 cut(s) 678
EclXI CGGCCG 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 347
Eco32I GATATC 1 cut(s) 577
Eco47I GGWCC 2 cut(s) 407, 1018
Eco52I CGGCCG 1 cut(s) 69
Eco57I CTGAAG 1 cut(s) 864
Eco91I GGTNACC 1 cut(s) 916
EcoNI CCTNNNNNAGG 1 cut(s) 465
EcoO65I GGTNACC 1 cut(s) 916
EcoRI GAATTC 1 cut(s) 847
EcoRV GATATC 1 cut(s) 577
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 6 cut(s) 55, 433, 827, 895, 916, 1025
FalI AAGNNNNNCTT 2 cut(s) 227, 259
FatI CATG 6 cut(s) 51, 429, 823, 891, 912, 1021
FauI CCCGC 1 cut(s) 221
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 3 cut(s) 72, 691, 1026
FokI GGATG 1 cut(s) 225
Fsp4HI GCNGC 3 cut(s) 72, 691, 1026
FspBI CTAG 1 cut(s) 467
GlaI GCGC 1 cut(s) 86
GluI GCNGC 3 cut(s) 72, 691, 1026
GsuI CTGGAG 1 cut(s) 692
HaeIII GGCC 2 cut(s) 71, 528
HapII CCGG 4 cut(s) 104, 124, 263, 660
HgaI GACGC 1 cut(s) 109
HhaI GCGC 1 cut(s) 87
Hin1II CATG 6 cut(s) 55, 433, 827, 895, 916, 1025
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HinfI GANTC 7 cut(s) 268, 656, 674, 768, 784, 820, 983
HpaII CCGG 4 cut(s) 104, 124, 263, 660
HphI GGTGA 3 cut(s) 289, 856, 928
Hpy166II GTNNAC 3 cut(s) 520, 940, 1018
Hpy188I TCNGA 3 cut(s) 93, 819, 853
Hpy188III TCNNGA 3 cut(s) 124, 248, 788
Hpy8I GTNNAC 3 cut(s) 520, 940, 1018
Hpy99I CGWCG 1 cut(s) 365
HpyAV CCTTC 1 cut(s) 697
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 3 cut(s) 635, 945, 1025
HpyF10VI GCNNNNNNNGC 1 cut(s) 381
HpyF3I CTNAG 5 cut(s) 110, 548, 558, 619, 818
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 6 cut(s) 55, 433, 827, 895, 916, 1025
HspAI GCGC 1 cut(s) 85
Kpn2I TCCGGA 1 cut(s) 123
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 3 cut(s) 250, 474, 814
Lsp1109I GCAGC 1 cut(s) 702
LweI GCATC 2 cut(s) 247, 954
MaeI CTAG 1 cut(s) 467
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 2 cut(s) 566, 916
MalI GATC 3 cut(s) 252, 476, 816
MbiI CCGCTC 1 cut(s) 412
MboI GATC 3 cut(s) 250, 474, 814
MboII GAAGA 7 cut(s) 163, 169, 263, 286, 696, 850, 968
MflI RGATCY 1 cut(s) 814
MhlI GDGCHC 1 cut(s) 600
MlsI TGGCCA 1 cut(s) 528
MluCI AATT 5 cut(s) 80, 531, 847, 854, 867
MluNI TGGCCA 1 cut(s) 528
MlyI GAGTC 4 cut(s) 262, 683, 762, 829
MmeI TCCRAC 1 cut(s) 761
MnlI CCTC 9 cut(s) 32, 35, 185, 205, 233, 236, 471, 545, 805
Mox20I TGGCCA 1 cut(s) 528
MroI TCCGGA 1 cut(s) 123
MscI TGGCCA 1 cut(s) 528
MseI TTAA 5 cut(s) 435, 510, 540, 609, 698
Msp20I TGGCCA 1 cut(s) 528
MspI CCGG 4 cut(s) 104, 124, 263, 660
MwoI GCNNNNNNNGC 1 cut(s) 381
NcoI CCATGG 1 cut(s) 51
NdeII GATC 3 cut(s) 250, 474, 814
NlaIII CATG 6 cut(s) 55, 433, 827, 895, 916, 1025
NlaIV GGNNCC 1 cut(s) 629
NmuCI GTSAC 2 cut(s) 566, 916
NspV TTCGAA 2 cut(s) 62, 865
PfeI GAWTC 3 cut(s) 656, 784, 983
PkrI GCNGC 3 cut(s) 73, 692, 1027
PleI GAGTC 4 cut(s) 262, 682, 762, 828
PpsI GAGTC 4 cut(s) 262, 682, 762, 828
PshBI ATTAAT 1 cut(s) 698
PspEI GGTNACC 1 cut(s) 916
PspN4I GGNNCC 1 cut(s) 629
PspPI GGNCC 2 cut(s) 407, 1018
PsuI RGATCY 1 cut(s) 814
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
Rsr2I CGGWCCG 1 cut(s) 407
RsrII CGGWCCG 1 cut(s) 407
SaqAI TTAA 5 cut(s) 435, 510, 540, 609, 698
SatI GCNGC 3 cut(s) 72, 691, 1026
Sau3AI GATC 3 cut(s) 250, 474, 814
Sau96I GGNCC 2 cut(s) 407, 1018
SchI GAGTC 4 cut(s) 262, 683, 762, 829
SduI GDGCHC 1 cut(s) 600
SetI ASST 6 cut(s) 363, 472, 633, 695, 880, 1030
SfaNI GCATC 2 cut(s) 247, 954
SfuI TTCGAA 2 cut(s) 62, 865
SinI GGWCC 2 cut(s) 407, 1018
Sse9I AATT 5 cut(s) 80, 531, 847, 854, 867
SsiI CCGC 5 cut(s) 72, 214, 405, 410, 663
SspMI CTAG 1 cut(s) 467
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 97
TaiI ACGT 1 cut(s) 363
TaqI TCGA 3 cut(s) 62, 414, 865
TaqII GACCGA 1 cut(s) 1023
TasI AATT 5 cut(s) 80, 531, 847, 854, 867
TatI WGTACW 1 cut(s) 3
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 3 cut(s) 656, 784, 983
Tru1I TTAA 5 cut(s) 435, 510, 540, 609, 698
Tru9I TTAA 5 cut(s) 435, 510, 540, 609, 698
TscAI CASTG 2 cut(s) 102, 377
TseFI GTSAC 2 cut(s) 566, 916
TseI GCWGC 2 cut(s) 690, 1025
Tsp45I GTSAC 2 cut(s) 566, 916
TspDTI ATGAA 3 cut(s) 716, 880, 1013
TspRI CASTG 2 cut(s) 102, 377
VpaK11BI GGWCC 2 cut(s) 407, 1018
VspI ATTAAT 1 cut(s) 698
XagI CCTNNNNNAGG 1 cut(s) 465
XapI RAATTY 4 cut(s) 531, 847, 854, 867
XspI CTAG 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.