RLG00000022978

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0018585
Physical Location & Seq
Reverse (-)
16203486 .. 16204292
807 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022978

Sequence Viewer

Length: 597 bp
ATGGCAAGTGCAGAACCCTTAAGTGCGAATACGGCCGCCGTAGAATTGCGCCGTCTGACAGTGTTGTCGGTGCTGAGCGAGTGCGTCCGGAAAGCAGATTATCTACTGCTGCTATTTCTCTCCCTTATCTTCCTCTTCCCAAAATGTTTTTCCTCCATATCCCACCCGACCCGCCAAAGCCTCCTCAAAGCCGAGCATCCCTTTCCTGATCAATACCAGTCGGAGACTCTTCTTGCTCTTGCTTTCTCATTCTTCACCCACATCTTTTCCTTGTGGGGATTTCTCTATTATCTCCTCGGTCTCTGGTCAATCACATACGTCGTATTTCATTGCTTTTATAGCCGTAGCCGTTTCATCAAATGCGGTCCGCTCGATACAATATACGCCATGTTTAAATCTTTGTGTATCGCCTTTTTCCCTCTGCTAGCGCTCGGTTGTCTTAATCTCCACTTAGAGTGGAACCTTGCACCATCTATTATTGTAGTAGAATCGGGCGGACTGCTGGAGTCTTTGAGAAGAAGCAGCTTATTAATGAAGGGAAAGAAAATGTTGGCTTTGTCTATATTATTGGTCTATGGTAGTTTTGCCATTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.38

Weight (kDa)

8.93

Isoelectric Point (pI)

49.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018585)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0487681
rosa_laevigata RLG00000021508 RLG00000022978
rosa_multiflora Rmu_sc0002995.1_g000016
rosa_rugosa Rorug03G0235500.1 Rorug03G0235600
rosa_samantha Rh2AG580500 Rh2DG601900 Rh3CG318300
rosa_wichuraiana Rw3G025150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 64
AccBSI CCGCTC 1 cut(s) 370
AccIII TCCGGA 1 cut(s) 87
AciI CCGC 5 cut(s) 36, 172, 363, 368, 495
AcoI YGGCCR 1 cut(s) 33
AfeI AGCGCT 1 cut(s) 429
AflII CTTAAG 1 cut(s) 19
AjuI GAANNNNNNNTTGG 2 cut(s) 133, 165
AluBI AGCT 1 cut(s) 525
AluI AGCT 1 cut(s) 525
Alw26I GTCTC 2 cut(s) 218, 305
Aor13HI TCCGGA 1 cut(s) 87
Aor51HI AGCGCT 1 cut(s) 429
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 2 cut(s) 109, 522
AseI ATTAAT 1 cut(s) 530
AspLEI GCGC 2 cut(s) 51, 430
AspS9I GGNCC 1 cut(s) 365
AsuHPI GGTGA 1 cut(s) 247
AsuNHI GCTAGC 1 cut(s) 424
AvaII GGWCC 1 cut(s) 365
BbvI GCAGC 2 cut(s) 96, 534
BccI CCATC 1 cut(s) 478
BceAI ACGGC 5 cut(s) 23, 36, 48, 327, 333
BclI TGATCA 1 cut(s) 208
BcoDI GTCTC 2 cut(s) 218, 305
BfaI CTAG 1 cut(s) 425
BfoI RGCGCY 1 cut(s) 431
BfrI CTTAAG 1 cut(s) 19
BisI GCNGC 3 cut(s) 36, 110, 523
BlpI GCTNAGC 1 cut(s) 74
BlsI GCNGC 3 cut(s) 37, 111, 524
Bme18I GGWCC 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 1 cut(s) 461
BmsI GCATC 1 cut(s) 205
BmtI GCTAGC 1 cut(s) 428
BpmI CTGGAG 1 cut(s) 524
Bpu1102I GCTNAGC 1 cut(s) 74
BsaI GGTCTC 1 cut(s) 305
BsaJI CCNNGG 1 cut(s) 295
BsaWI WCCGGW 1 cut(s) 87
Bse1I ACTGG 1 cut(s) 217
Bse3DI GCAATG 1 cut(s) 328
BseAI TCCGGA 1 cut(s) 87
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 1 cut(s) 196
BseMI GCAATG 1 cut(s) 328
BseMII CTCAG 1 cut(s) 65
BseNI ACTGG 1 cut(s) 217
BseRI GAGGAG 2 cut(s) 173, 284
BseX3I CGGCCG 1 cut(s) 33
BseXI GCAGC 2 cut(s) 96, 534
BsgI GTGCAG 1 cut(s) 30
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 1 cut(s) 35
BsiEI CGRYCG 1 cut(s) 36
BsiSI CCGG 1 cut(s) 88
BsmAI GTCTC 2 cut(s) 218, 305
BsnI GGCC 1 cut(s) 35
Bso31I GGTCTC 1 cut(s) 305
Bsp13I TCCGGA 1 cut(s) 87
Bsp143I GATC 1 cut(s) 208
Bsp1720I GCTNAGC 1 cut(s) 74
BspACI CCGC 5 cut(s) 36, 172, 363, 368, 495
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 1 cut(s) 66
BspEI TCCGGA 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 461
BspOI GCTAGC 1 cut(s) 428
BspTI CTTAAG 1 cut(s) 19
BspTNI GGTCTC 1 cut(s) 305
BsrBI CCGCTC 1 cut(s) 370
BsrDI GCAATG 1 cut(s) 328
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 1 cut(s) 208
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 2 cut(s) 140, 234
BstAFI CTTAAG 1 cut(s) 19
BstC8I GCNNGC 1 cut(s) 426
BstDEI CTNAG 2 cut(s) 74, 451
BstF5I GGATG 1 cut(s) 196
BstH2I RGCGCY 1 cut(s) 431
BstHHI GCGC 2 cut(s) 51, 430
BstKTI GATC 1 cut(s) 211
BstMAI GTCTC 2 cut(s) 218, 305
BstMBI GATC 1 cut(s) 208
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 2 cut(s) 32, 339
BstV1I GCAGC 2 cut(s) 96, 534
BstZI CGGCCG 1 cut(s) 33
BsuRI GGCC 1 cut(s) 35
BtsCI GGATG 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 1 cut(s) 426
CfoI GCGC 2 cut(s) 51, 430
Cfr13I GGNCC 1 cut(s) 365
CpoI CGGWCCG 1 cut(s) 365
CseI GACGC 1 cut(s) 73
CspI CGGWCCG 1 cut(s) 365
CviAII CATG 1 cut(s) 388
CviJI RGCY 7 cut(s) 35, 180, 191, 342, 348, 525, 554
CviKI_1 RGCY 7 cut(s) 35, 180, 191, 342, 348, 525, 554
DdeI CTNAG 2 cut(s) 74, 451
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
DraI TTTAAA 1 cut(s) 394
DrdI GACNNNNNNGTC 1 cut(s) 64
DseDI GACNNNNNNGTC 1 cut(s) 64
EaeI YGGCCR 1 cut(s) 33
EagI CGGCCG 1 cut(s) 33
Eam1104I CTCTTC 2 cut(s) 140, 234
EarI CTCTTC 2 cut(s) 140, 234
EciI GGCGGA 1 cut(s) 510
EclXI CGGCCG 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 305
Eco47I GGWCC 1 cut(s) 365
Eco47III AGCGCT 1 cut(s) 429
Eco52I CGGCCG 1 cut(s) 33
FaeI CATG 1 cut(s) 391
FaiI YATR 7 cut(s) 158, 316, 339, 382, 389, 563, 576
FatI CATG 1 cut(s) 387
FauI CCCGC 1 cut(s) 179
FbaI TGATCA 1 cut(s) 208
Fnu4HI GCNGC 3 cut(s) 36, 110, 523
FokI GGATG 1 cut(s) 183
Fsp4HI GCNGC 3 cut(s) 36, 110, 523
FspBI CTAG 1 cut(s) 425
GlaI GCGC 2 cut(s) 50, 429
GluI GCNGC 3 cut(s) 36, 110, 523
GsuI CTGGAG 1 cut(s) 524
HaeII RGCGCY 1 cut(s) 431
HaeIII GGCC 1 cut(s) 35
HapII CCGG 1 cut(s) 88
HgaI GACGC 1 cut(s) 73
HhaI GCGC 2 cut(s) 51, 430
Hin1II CATG 1 cut(s) 391
Hin6I GCGC 2 cut(s) 49, 428
HinP1I GCGC 2 cut(s) 49, 428
HinfI GANTC 3 cut(s) 226, 488, 506
HpaII CCGG 1 cut(s) 88
HphI GGTGA 1 cut(s) 247
Hpy188I TCNGA 2 cut(s) 57, 223
Hpy188III TCNNGA 2 cut(s) 88, 206
Hpy99I CGWCG 1 cut(s) 323
HpyAV CCTTC 1 cut(s) 529
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 2 cut(s) 11, 467
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 339
HpyF3I CTNAG 2 cut(s) 74, 451
HpySE526I ACGT 1 cut(s) 318
Hsp92II CATG 1 cut(s) 391
HspAI GCGC 2 cut(s) 49, 428
Kpn2I TCCGGA 1 cut(s) 87
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 1 cut(s) 208
LpnPI CCDG 5 cut(s) 101, 219, 230, 289, 488
Lsp1109I GCAGC 2 cut(s) 96, 534
LweI GCATC 1 cut(s) 205
MaeI CTAG 1 cut(s) 425
MaeII ACGT 1 cut(s) 318
MalI GATC 1 cut(s) 210
MbiI CCGCTC 1 cut(s) 370
MboI GATC 1 cut(s) 208
MboII GAAGA 5 cut(s) 121, 127, 221, 244, 528
MluCI AATT 1 cut(s) 44
MlyI GAGTC 2 cut(s) 220, 515
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 6 cut(s) 143, 163, 191, 194, 305, 429
MroI TCCGGA 1 cut(s) 87
MseI TTAA 4 cut(s) 20, 393, 441, 530
MspCI CTTAAG 1 cut(s) 19
MspI CCGG 1 cut(s) 88
MwoI GCNNNNNNNGC 2 cut(s) 32, 339
NdeII GATC 1 cut(s) 208
NheI GCTAGC 1 cut(s) 424
NlaIII CATG 1 cut(s) 391
NlaIV GGNNCC 1 cut(s) 461
NmeAIII GCCGAG 1 cut(s) 217
PfeI GAWTC 1 cut(s) 488
PkrI GCNGC 3 cut(s) 37, 111, 524
PleI GAGTC 2 cut(s) 220, 514
PpsI GAGTC 2 cut(s) 220, 514
PshBI ATTAAT 1 cut(s) 530
PspN4I GGNNCC 1 cut(s) 461
PspPI GGNCC 1 cut(s) 365
Rsr2I CGGWCCG 1 cut(s) 365
RsrII CGGWCCG 1 cut(s) 365
SaqAI TTAA 4 cut(s) 20, 393, 441, 530
SatI GCNGC 3 cut(s) 36, 110, 523
Sau3AI GATC 1 cut(s) 208
Sau96I GGNCC 1 cut(s) 365
SchI GAGTC 2 cut(s) 220, 515
SetI ASST 3 cut(s) 321, 465, 527
SfaNI GCATC 1 cut(s) 205
SinI GGWCC 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 19
SmoI CTYRAG 1 cut(s) 19
Sse9I AATT 1 cut(s) 44
SsiI CCGC 5 cut(s) 36, 172, 363, 368, 495
SspMI CTAG 1 cut(s) 425
TaaI ACNGT 1 cut(s) 61
TaiI ACGT 1 cut(s) 321
TaqI TCGA 1 cut(s) 372
TaqII GACCGA 1 cut(s) 287
TasI AATT 1 cut(s) 44
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 1 cut(s) 488
Tru1I TTAA 4 cut(s) 20, 393, 441, 530
Tru9I TTAA 4 cut(s) 20, 393, 441, 530
TscAI CASTG 1 cut(s) 66
TseI GCWGC 2 cut(s) 109, 522
TspDTI ATGAA 3 cut(s) 317, 343, 548
TspRI CASTG 1 cut(s) 66
Vha464I CTTAAG 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 365
VspI ATTAAT 1 cut(s) 530
XspI CTAG 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.