Rh2AG580500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0018585
Physical Location & Seq
Forward (+)
80958471 .. 80960602
2132 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG580500.1

Sequence Viewer

Length: 516 bp
ATGAGCATAAACCCTTGGCACCCATATATTGCACCTCTCTCACACAACCGAACCTCAATCTCCGCCACCACATCTCCGCCGTCCGCAGCGAGTCTCTCCACATCATCAAATCCCACTTCCCCCAACTACTCTTCCTCTCCTTCCTCTACCTCTTCCCCAAAGCCTTCGCCTCCATCGCCCACCGACCCGCCAGAGCCTCATCAAGGCCCACCACCCGGGCCGAGACCTTCCTCGCCCTCGTCTTCTCGGTCTACAGCTCCATCGTCTCGTTCTCGGGTTACGTGTTCTACTCTCTCGGCCTCTGGTACGTCACCCACACCATCGGCTGATGAAGGGGAGTCGGGTGAGCTGATGGAGTCGCTGAAGAGGAGTAGTAAGTTGATGAAGGGGAGGAGCTATGGTTGCTCTGTCCATGTGGTTTTCGGGTCGGTTGCGGTGGTGCTGGGGTTTGTGAGCAGCTGGATGTTGGTGGCCCAGATTGGTTTGTTTGGTGTTTTGAGAGGCGGGGGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

17.54

Weight (kDa)

9.69

Isoelectric Point (pI)

84.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018585)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0487681
rosa_laevigata RLG00000021508 RLG00000022978
rosa_multiflora Rmu_sc0002995.1_g000016
rosa_rugosa Rorug03G0235500.1 Rorug03G0235600
rosa_samantha Rh2AG580500 Rh2DG601900 Rh3CG318300
rosa_wichuraiana Rw3G025150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 18
AccI GTMKAC 1 cut(s) 251
AciI CCGC 6 cut(s) 63, 77, 84, 188, 434, 504
AcuI CTGAAG 1 cut(s) 383
AfaI GTAC 1 cut(s) 307
AfiI CCNNNNNNNGG 2 cut(s) 203, 215
AflIII ACRYGT 1 cut(s) 281
AluBI AGCT 4 cut(s) 257, 349, 396, 459
AluI AGCT 4 cut(s) 257, 349, 396, 459
Alw26I GTCTC 3 cut(s) 98, 217, 270
Ama87I CYCGRG 2 cut(s) 215, 273
AoxI GGCC 4 cut(s) 205, 218, 297, 471
ApeKI GCWGC 2 cut(s) 86, 456
AspS9I GGNCC 3 cut(s) 206, 218, 472
AsuC2I CCSGG 2 cut(s) 216, 217
AsuHPI GGTGA 2 cut(s) 303, 356
AvaI CYCGRG 2 cut(s) 215, 273
BanI GGYRCC 1 cut(s) 18
BbsI GAAGAC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 98, 468
BccI CCATC 5 cut(s) 181, 268, 328, 346, 504
BceAI ACGGC 1 cut(s) 64
BcnI CCSGG 2 cut(s) 216, 217
BcoDI GTCTC 3 cut(s) 98, 217, 270
BfmI CTRYAG 1 cut(s) 252
BisI GCNGC 2 cut(s) 87, 457
BlsI GCNGC 2 cut(s) 88, 458
Bme1390I CCNGG 2 cut(s) 216, 217
BmeT110I CYCGRG 2 cut(s) 215, 273
BmgT120I GGNCC 3 cut(s) 206, 218, 472
BmiI GGNNCC 1 cut(s) 20
BmrFI CCNGG 2 cut(s) 216, 217
BpiI GAAGAC 1 cut(s) 234
BpuMI CCSGG 2 cut(s) 216, 217
BsaAI YACGTR 1 cut(s) 282
BsaI GGTCTC 1 cut(s) 217
BsaJI CCNNGG 2 cut(s) 14, 215
BsaXI ACNNNNNCTCC 4 cut(s) 58, 88, 385, 415
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 215
BseDI CCNNGG 2 cut(s) 14, 215
BseGI GGATG 2 cut(s) 468, 515
BseLI CCNNNNNNNGG 2 cut(s) 203, 215
BseRI GAGGAG 2 cut(s) 382, 406
BseXI GCAGC 2 cut(s) 98, 468
BseYI CCCAGC 1 cut(s) 442
BshFI GGCC 4 cut(s) 207, 220, 299, 473
BshNI GGYRCC 1 cut(s) 18
BsiHKCI CYCGRG 2 cut(s) 215, 273
BsiSI CCGG 1 cut(s) 216
BslI CCNNNNNNNGG 2 cut(s) 203, 215
BsmAI GTCTC 3 cut(s) 98, 217, 270
BsmBI CGTCTC 1 cut(s) 270
BsnI GGCC 4 cut(s) 207, 220, 299, 473
Bso31I GGTCTC 1 cut(s) 217
BsoBI CYCGRG 2 cut(s) 215, 273
BspACI CCGC 6 cut(s) 63, 77, 84, 188, 434, 504
BspANI GGCC 4 cut(s) 207, 220, 299, 473
BspLI GGNNCC 1 cut(s) 20
BspT107I GGYRCC 1 cut(s) 18
BspTNI GGTCTC 1 cut(s) 217
BssECI CCNNGG 2 cut(s) 14, 215
BssT1I CCWWGG 1 cut(s) 14
Bst6I CTCTTC 3 cut(s) 136, 157, 359
BstBAI YACGTR 1 cut(s) 282
BstENI CCTNNNNNAGG 1 cut(s) 201
BstF5I GGATG 2 cut(s) 468, 515
BstMAI GTCTC 3 cut(s) 98, 217, 270
BstMWI GCNNNNNNNGC 2 cut(s) 175, 402
BstSCI CCNGG 2 cut(s) 214, 215
BstSFI CTRYAG 1 cut(s) 252
BstV1I GCAGC 2 cut(s) 98, 468
BstV2I GAAGAC 1 cut(s) 234
BsuRI GGCC 4 cut(s) 207, 220, 299, 473
BtgZI GCGATG 1 cut(s) 159
BtsCI GGATG 2 cut(s) 468, 515
Cfr13I GGNCC 3 cut(s) 206, 218, 472
Cfr9I CCCGGG 1 cut(s) 215
Csp6I GTAC 1 cut(s) 306
CviAII CATG 1 cut(s) 413
CviQI GTAC 1 cut(s) 306
Eam1104I CTCTTC 3 cut(s) 136, 157, 359
EarI CTCTTC 3 cut(s) 136, 157, 359
EciI GGCGGA 2 cut(s) 52, 66
Eco130I CCWWGG 1 cut(s) 14
Eco31I GGTCTC 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 383
Eco88I CYCGRG 2 cut(s) 215, 273
EcoNI CCTNNNNNAGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 14
ErhI CCWWGG 1 cut(s) 14
Esp3I CGTCTC 1 cut(s) 270
FaeI CATG 1 cut(s) 416
FaiI YATR 5 cut(s) 8, 25, 27, 399, 414
FatI CATG 1 cut(s) 412
FauI CCCGC 2 cut(s) 195, 497
FblI GTMKAC 1 cut(s) 251
Fnu4HI GCNGC 2 cut(s) 87, 457
FokI GGATG 1 cut(s) 475
Fsp4HI GCNGC 2 cut(s) 87, 457
GluI GCNGC 2 cut(s) 87, 457
GsaI CCCAGC 1 cut(s) 446
HaeIII GGCC 4 cut(s) 207, 220, 299, 473
HapII CCGG 1 cut(s) 216
Hin1II CATG 1 cut(s) 416
HinfI GANTC 3 cut(s) 91, 338, 356
HpaII CCGG 1 cut(s) 216
HphI GGTGA 2 cut(s) 303, 356
Hpy166II GTNNAC 1 cut(s) 252
Hpy8I GTNNAC 1 cut(s) 252
HpyAV CCTTC 5 cut(s) 150, 174, 237, 326, 379
HpyCH4IV ACGT 2 cut(s) 281, 308
HpyCH4V TGCA 1 cut(s) 32
HpyF10VI GCNNNNNNNGC 2 cut(s) 175, 402
HpySE526I ACGT 2 cut(s) 281, 308
Hsp92II CATG 1 cut(s) 416
LmnI GCTCC 2 cut(s) 262, 393
LpnPI CCDG 6 cut(s) 204, 229, 288, 428, 445, 488
Lsp1109I GCAGC 2 cut(s) 98, 468
MaeII ACGT 2 cut(s) 281, 308
MaeIII GTNAC 2 cut(s) 277, 309
MboII GAAGA 4 cut(s) 123, 144, 234, 376
MlyI GAGTC 3 cut(s) 100, 347, 365
MspA1I CMGCKG 1 cut(s) 459
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 2 cut(s) 216, 217
MwoI GCNNNNNNNGC 2 cut(s) 175, 402
NciI CCSGG 2 cut(s) 216, 217
NlaIII CATG 1 cut(s) 416
NlaIV GGNNCC 1 cut(s) 20
NmeAIII GCCGAG 2 cut(s) 246, 275
NmuCI GTSAC 1 cut(s) 309
PkrI GCNGC 2 cut(s) 88, 458
PleI GAGTC 3 cut(s) 99, 346, 364
PpsI GAGTC 3 cut(s) 99, 346, 364
Ppu21I YACGTR 1 cut(s) 282
PspFI CCCAGC 1 cut(s) 442
PspN4I GGNNCC 1 cut(s) 20
PspPI GGNCC 3 cut(s) 206, 218, 472
PvuII CAGCTG 1 cut(s) 459
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
SatI GCNGC 2 cut(s) 87, 457
Sau96I GGNCC 3 cut(s) 206, 218, 472
SchI GAGTC 3 cut(s) 100, 347, 365
ScrFI CCNGG 2 cut(s) 216, 217
SfcI CTRYAG 1 cut(s) 252
SmaI CCCGGG 1 cut(s) 217
SsiI CCGC 6 cut(s) 63, 77, 84, 188, 434, 504
StyD4I CCNGG 2 cut(s) 214, 215
StyI CCWWGG 1 cut(s) 14
TaiI ACGT 2 cut(s) 284, 311
TaqII GACCGA 1 cut(s) 237
TseFI GTSAC 1 cut(s) 309
TseI GCWGC 2 cut(s) 86, 456
Tsp45I GTSAC 1 cut(s) 309
TspDTI ATGAA 2 cut(s) 345, 398
TspMI CCCGGG 1 cut(s) 215
XagI CCTNNNNNAGG 1 cut(s) 201
XmaI CCCGGG 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.