Rh3CG318300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0018585
Physical Location & Seq
Reverse (-)
34044362 .. 34046698
2337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG318300.1

Sequence Viewer

Length: 984 bp
ATGGCAAGTTCGAATACGGCCGCCGTAGAATTGCGCCGTCTGACAGTGTTGCCGGTGCTGAGCGAGTGCGTCCGGATACTCAAAGCAGATTATCTACCGCTGCTATTTCTCTCCATTATCTTCCTCTTCCCAAAATGTTTTTCCTCCATATCCCACCCGACCCGCCAAAGCCTCCTCAAAGCCGAGCATCCCTTTCCTGATCAATACCAGTCGGAGACTCTTCTTGCTCTTGCTTTCTCATTCCTCACCCACATCTTTTCCTTGTGGGGATTTCTCCATCATCTCTTGGGTCTCTGGTCAATCACATACGTCGTATTTCAGTGCTTTTATAGCCGTAGCCGTTTCCTCAAATGCGGTCCGCTCGATACAATTTACGCCATGTTTAAATCTTTGTGTATCTCCTTTTTCCCTCTGCTAGGTGTGATCCTAATCTTTGTTCCCAACATTGTTAGTTTGTTTAATCTGGTTCACTTTGGTCAAATTTTGTTTAAGGGGCTTAGAGGAACTGAGAAAAGTGACATAGATATCTTTTATGCTGTTTTAGTGCTCGGTTGTCTTAATCTCCACTTAGAGTGGAACCTTGCACCATCTATTATTGTAGTAGAATCGGGCGGACTGCTGGAGTCTCTGAGAAGAAGCAGCTTATTAATGAAGGGAAAGAAAATGTTGGCTTTGTCTATATTATTGGTCTATGGTAGTTTTGCCATTATTTTAGGACTCTTTAGTAGTTGGATTCTGGAAGTCCAGTTGAGTTTGAATGAGGATCTGAGTCATGGTGGTTGGTGGAAGATGGTGAATTGGGAATTTCTGTTTCGAATTTTACCAGCATCAGTTTTATTCATGTTGGTTTTGTTGTTCAACATGGTGACCAATATCGTTTTCTATGTTTACTGCATCAAGCCAGAAGATAATGAGAAAGAAAAAAGTTGTGAATCAGTCTCAACTATGAAGTATGACCGACTTGTGGACCATGCAGCTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

327

Amino Acids

37.37

Weight (kDa)

8.08

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018585)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0487681
rosa_laevigata RLG00000021508 RLG00000022978
rosa_multiflora Rmu_sc0002995.1_g000016
rosa_rugosa Rorug03G0235500.1 Rorug03G0235600
rosa_samantha Rh2AG580500 Rh2DG601900 Rh3CG318300
rosa_wichuraiana Rw3G025150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 361
AccIII TCCGGA 1 cut(s) 72
AciI CCGC 6 cut(s) 21, 98, 163, 354, 359, 612
AclWI GGATC 2 cut(s) 418, 771
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 3 cut(s) 480, 803, 816
AfiI CCNNNNNNNGG 2 cut(s) 416, 964
AgsI TTSAA 2 cut(s) 757, 859
AjuI GAANNNNNNNTTGG 4 cut(s) 124, 156, 863, 895
AluBI AGCT 2 cut(s) 642, 977
AluI AGCT 2 cut(s) 642, 977
Alw21I GWGCWC 1 cut(s) 549
Alw26I GTCTC 4 cut(s) 209, 296, 630, 943
AlwI GGATC 2 cut(s) 418, 771
Aor13HI TCCGGA 1 cut(s) 72
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 3 cut(s) 100, 639, 974
ApoI RAATTY 3 cut(s) 480, 803, 816
AseI ATTAAT 1 cut(s) 647
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 2 cut(s) 356, 967
AsuHPI GGTGA 3 cut(s) 238, 805, 877
AsuII TTCGAA 2 cut(s) 11, 814
AvaII GGWCC 2 cut(s) 356, 967
Bbv12I GWGCWC 1 cut(s) 549
BbvI GCAGC 2 cut(s) 87, 651
BccI CCATC 3 cut(s) 285, 595, 784
BceAI ACGGC 5 cut(s) 8, 21, 33, 318, 324
BciVI GTATCC 1 cut(s) 69
BclI TGATCA 1 cut(s) 199
BcoDI GTCTC 4 cut(s) 209, 296, 630, 943
BfaI CTAG 1 cut(s) 416
BfuI GTATCC 1 cut(s) 69
BisI GCNGC 4 cut(s) 21, 101, 640, 975
BlpI GCTNAGC 1 cut(s) 59
BlsI GCNGC 4 cut(s) 22, 102, 641, 976
Bme18I GGWCC 2 cut(s) 356, 967
BmgT120I GGNCC 2 cut(s) 356, 967
BmiI GGNNCC 1 cut(s) 578
BmsI GCATC 3 cut(s) 196, 836, 903
BpmI CTGGAG 1 cut(s) 641
Bpu1102I GCTNAGC 1 cut(s) 59
Bpu14I TTCGAA 2 cut(s) 11, 814
BsaBI GATNNNNATC 1 cut(s) 428
BsaI GGTCTC 1 cut(s) 296
BsaWI WCCGGW 1 cut(s) 72
Bsc4I CCNNNNNNNGG 2 cut(s) 416, 964
Bse118I RCCGGY 1 cut(s) 52
Bse1I ACTGG 2 cut(s) 208, 745
Bse8I GATNNNNATC 1 cut(s) 428
BseAI TCCGGA 1 cut(s) 72
BseGI GGATG 1 cut(s) 187
BseJI GATNNNNATC 1 cut(s) 428
BseLI CCNNNNNNNGG 2 cut(s) 416, 964
BseMII CTCAG 4 cut(s) 50, 498, 620, 758
BseNI ACTGG 2 cut(s) 208, 745
BseRI GAGGAG 1 cut(s) 164
BseX3I CGGCCG 1 cut(s) 18
BseXI GCAGC 2 cut(s) 87, 651
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 549
BsiSI CCGG 2 cut(s) 53, 73
BslI CCNNNNNNNGG 2 cut(s) 416, 964
BsmAI GTCTC 4 cut(s) 209, 296, 630, 943
BsnI GGCC 1 cut(s) 20
Bso31I GGTCTC 1 cut(s) 296
Bsp119I TTCGAA 2 cut(s) 11, 814
Bsp1286I GDGCHC 1 cut(s) 549
Bsp13I TCCGGA 1 cut(s) 72
Bsp143I GATC 3 cut(s) 199, 423, 763
Bsp1720I GCTNAGC 1 cut(s) 59
BspACI CCGC 6 cut(s) 21, 98, 163, 354, 359, 612
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 4 cut(s) 51, 499, 621, 759
BspEI TCCGGA 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 578
BspPI GGATC 2 cut(s) 418, 771
BspT104I TTCGAA 2 cut(s) 11, 814
BspTNI GGTCTC 1 cut(s) 296
BsrBI CCGCTC 1 cut(s) 361
BsrFI RCCGGY 1 cut(s) 52
BsrI ACTGG 2 cut(s) 208, 745
BssAI RCCGGY 1 cut(s) 52
BssMI GATC 3 cut(s) 199, 423, 763
Bst4CI ACNGT 1 cut(s) 46
Bst6I CTCTTC 2 cut(s) 131, 225
BstBI TTCGAA 2 cut(s) 11, 814
BstDEI CTNAG 6 cut(s) 59, 497, 507, 568, 629, 767
BstEII GGTNACC 1 cut(s) 865
BstENI CCTNNNNNAGG 1 cut(s) 414
BstF5I GGATG 1 cut(s) 187
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 3 cut(s) 202, 426, 766
BstMAI GTCTC 4 cut(s) 209, 296, 630, 943
BstMBI GATC 3 cut(s) 199, 423, 763
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 1 cut(s) 330
BstPI GGTNACC 1 cut(s) 865
BstV1I GCAGC 2 cut(s) 87, 651
BstX2I RGATCY 1 cut(s) 763
BstYI RGATCY 1 cut(s) 763
BstZI CGGCCG 1 cut(s) 18
BsuI GTATCC 1 cut(s) 69
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 187
BtsIMutI CAGTG 2 cut(s) 51, 326
CfoI GCGC 1 cut(s) 36
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 2 cut(s) 356, 967
CpoI CGGWCCG 1 cut(s) 356
CseI GACGC 1 cut(s) 58
CspI CGGWCCG 1 cut(s) 356
CviAII CATG 5 cut(s) 379, 773, 841, 862, 971
DdeI CTNAG 6 cut(s) 59, 497, 507, 568, 629, 767
DpnI GATC 3 cut(s) 201, 425, 765
DpnII GATC 3 cut(s) 199, 423, 763
DraI TTTAAA 1 cut(s) 385
EaeI YGGCCR 1 cut(s) 18
EagI CGGCCG 1 cut(s) 18
Eam1104I CTCTTC 2 cut(s) 131, 225
EarI CTCTTC 2 cut(s) 131, 225
EciI GGCGGA 1 cut(s) 627
EclXI CGGCCG 1 cut(s) 18
Eco31I GGTCTC 1 cut(s) 296
Eco32I GATATC 1 cut(s) 526
Eco47I GGWCC 2 cut(s) 356, 967
Eco52I CGGCCG 1 cut(s) 18
Eco91I GGTNACC 1 cut(s) 865
EcoNI CCTNNNNNAGG 1 cut(s) 414
EcoO65I GGTNACC 1 cut(s) 865
EcoRV GATATC 1 cut(s) 526
FaeI CATG 5 cut(s) 382, 776, 844, 865, 974
FatI CATG 5 cut(s) 378, 772, 840, 861, 970
FauI CCCGC 1 cut(s) 170
FbaI TGATCA 1 cut(s) 199
Fnu4HI GCNGC 4 cut(s) 21, 101, 640, 975
FokI GGATG 1 cut(s) 174
Fsp4HI GCNGC 4 cut(s) 21, 101, 640, 975
FspBI CTAG 1 cut(s) 416
GlaI GCGC 1 cut(s) 35
GluI GCNGC 4 cut(s) 21, 101, 640, 975
GsuI CTGGAG 1 cut(s) 641
HaeIII GGCC 1 cut(s) 20
HapII CCGG 2 cut(s) 53, 73
HgaI GACGC 1 cut(s) 58
HhaI GCGC 1 cut(s) 36
Hin1II CATG 5 cut(s) 382, 776, 844, 865, 974
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HinfI GANTC 7 cut(s) 217, 605, 623, 717, 733, 769, 932
HpaII CCGG 2 cut(s) 53, 73
HphI GGTGA 3 cut(s) 238, 805, 877
Hpy166II GTNNAC 3 cut(s) 469, 889, 967
Hpy188I TCNGA 4 cut(s) 42, 214, 630, 768
Hpy188III TCNNGA 3 cut(s) 73, 197, 737
Hpy8I GTNNAC 3 cut(s) 469, 889, 967
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 1 cut(s) 646
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 3 cut(s) 584, 894, 974
HpyF10VI GCNNNNNNNGC 1 cut(s) 330
HpyF3I CTNAG 6 cut(s) 59, 497, 507, 568, 629, 767
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 5 cut(s) 382, 776, 844, 865, 974
HspAI GCGC 1 cut(s) 34
Kpn2I TCCGGA 1 cut(s) 72
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 3 cut(s) 199, 423, 763
Lsp1109I GCAGC 2 cut(s) 87, 651
LweI GCATC 3 cut(s) 196, 836, 903
MaeI CTAG 1 cut(s) 416
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 2 cut(s) 515, 865
MalI GATC 3 cut(s) 201, 425, 765
MbiI CCGCTC 1 cut(s) 361
MboI GATC 3 cut(s) 199, 423, 763
MboII GAAGA 6 cut(s) 112, 118, 212, 645, 799, 917
MflI RGATCY 1 cut(s) 763
MhlI GDGCHC 1 cut(s) 549
MluCI AATT 6 cut(s) 29, 369, 480, 796, 803, 816
MlyI GAGTC 4 cut(s) 211, 632, 711, 778
MmeI TCCRAC 2 cut(s) 192, 710
MnlI CCTC 9 cut(s) 134, 154, 182, 185, 254, 356, 420, 494, 754
MroI TCCGGA 1 cut(s) 72
MseI TTAA 5 cut(s) 384, 459, 489, 558, 647
MspA1I CMGCKG 1 cut(s) 100
MspI CCGG 2 cut(s) 53, 73
MwoI GCNNNNNNNGC 1 cut(s) 330
NdeII GATC 3 cut(s) 199, 423, 763
NlaIII CATG 5 cut(s) 382, 776, 844, 865, 974
NlaIV GGNNCC 1 cut(s) 578
NmeAIII GCCGAG 1 cut(s) 208
NmuCI GTSAC 2 cut(s) 515, 865
NspV TTCGAA 2 cut(s) 11, 814
PfeI GAWTC 3 cut(s) 605, 733, 932
PkrI GCNGC 4 cut(s) 22, 102, 641, 976
PleI GAGTC 4 cut(s) 211, 631, 711, 777
PpsI GAGTC 4 cut(s) 211, 631, 711, 777
PshBI ATTAAT 1 cut(s) 647
PspEI GGTNACC 1 cut(s) 865
PspN4I GGNNCC 1 cut(s) 578
PspPI GGNCC 2 cut(s) 356, 967
PsuI RGATCY 1 cut(s) 763
Rsr2I CGGWCCG 1 cut(s) 356
RsrII CGGWCCG 1 cut(s) 356
SaqAI TTAA 5 cut(s) 384, 459, 489, 558, 647
SatI GCNGC 4 cut(s) 21, 101, 640, 975
Sau3AI GATC 3 cut(s) 199, 423, 763
Sau96I GGNCC 2 cut(s) 356, 967
SchI GAGTC 4 cut(s) 211, 632, 711, 778
SduI GDGCHC 1 cut(s) 549
SetI ASST 5 cut(s) 312, 421, 582, 644, 979
SfaNI GCATC 3 cut(s) 196, 836, 903
SfuI TTCGAA 2 cut(s) 11, 814
SinI GGWCC 2 cut(s) 356, 967
Sse9I AATT 6 cut(s) 29, 369, 480, 796, 803, 816
SsiI CCGC 6 cut(s) 21, 98, 163, 354, 359, 612
SspMI CTAG 1 cut(s) 416
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 1 cut(s) 312
TaqI TCGA 3 cut(s) 11, 363, 814
TaqII GACCGA 1 cut(s) 972
TasI AATT 6 cut(s) 29, 369, 480, 796, 803, 816
TauI GCSGC 1 cut(s) 23
TfiI GAWTC 3 cut(s) 605, 733, 932
Tru1I TTAA 5 cut(s) 384, 459, 489, 558, 647
Tru9I TTAA 5 cut(s) 384, 459, 489, 558, 647
TscAI CASTG 2 cut(s) 51, 326
TseFI GTSAC 2 cut(s) 515, 865
TseI GCWGC 3 cut(s) 100, 639, 974
Tsp45I GTSAC 2 cut(s) 515, 865
TspDTI ATGAA 3 cut(s) 665, 829, 962
TspRI CASTG 2 cut(s) 51, 326
VpaK11BI GGWCC 2 cut(s) 356, 967
VspI ATTAAT 1 cut(s) 647
XagI CCTNNNNNAGG 1 cut(s) 414
XapI RAATTY 3 cut(s) 480, 803, 816
XspI CTAG 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.