RchiOBHm_Chr4g0389381

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0018601
Physical Location & Seq
Reverse (-)
4377085 .. 4378255
1171 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36251

Sequence Viewer

Length: 393 bp
ATGTCCTTGATCAGATCAAGGATCGAGATCGCGTCCAGAGGCTTCGAGGTCTCCCAACTCGAAACCGAGAGCCAGAAACCTGATCCCCAAACTCGACCTGTGCTCCACCGTCAGGCCGCCTCAGGCCGGCGCACGAGCACCATCCTCTTCGTCTCGCTGTCGTCTACGTTCCTGTGGCCTCGGATCATACATGCAGCGACTGTGAACGGAGAATCGACGATCCAAAGCTTGAAGAACCTCCGGCGAGTTTCAACGAATTTCGGGGACTCCGCCCACCGTTTGGGGTGCATGTGTTCTCCGACATCGTTGGTTTTCCGGCACTTCTGTTTCTGGCTCAACTGCATCTATAGGCGAGGACTGACCTTGATTGAAGTTAAAGTCTGGAAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.88

Weight (kDa)

10.77

Isoelectric Point (pI)

64.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018601)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0389381 RchiOBHm_Chr5g0042821
rosa_laevigata RLG00000003038
rosa_multiflora Rmu_sc0003765.1_g000049
rosa_roxburghii Rroxscaffold_2G00138470 Rroxscaffold_4G00304200
rosa_rugosa Rorug03G0014100 Rorug05G0266500.1
rosa_samantha Rh7AG254600 Rh7DG262100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 280
AccI GTMKAC 1 cut(s) 164
AccII CGCG 1 cut(s) 32
AciI CCGC 2 cut(s) 117, 270
AclWI GGATC 4 cut(s) 29, 77, 191, 214
AcsI RAATTY 2 cut(s) 256, 386
AfiI CCNNNNNNNGG 3 cut(s) 112, 126, 280
AgsI TTSAA 3 cut(s) 232, 252, 371
AluBI AGCT 1 cut(s) 228
AluI AGCT 1 cut(s) 228
Alw21I GWGCWC 2 cut(s) 105, 140
Alw26I GTCTC 2 cut(s) 55, 157
AlwI GGATC 4 cut(s) 29, 77, 191, 214
AlwNI CAGNNNCTG 1 cut(s) 200
AoxI GGCC 3 cut(s) 114, 124, 176
ApeKI GCWGC 1 cut(s) 194
ApoI RAATTY 2 cut(s) 256, 386
AspLEI GCGC 1 cut(s) 132
AxyI CCTNAGG 1 cut(s) 121
BauI CACGAG 1 cut(s) 133
Bbv12I GWGCWC 2 cut(s) 105, 140
BbvI GCAGC 1 cut(s) 206
BccI CCATC 1 cut(s) 149
BclI TGATCA 1 cut(s) 9
BcoDI GTCTC 2 cut(s) 55, 157
BfmI CTRYAG 1 cut(s) 346
BisI GCNGC 2 cut(s) 117, 195
BlsI GCNGC 2 cut(s) 118, 196
BmsI GCATC 1 cut(s) 351
BsaBI GATNNNNATC 1 cut(s) 26
BsaI GGTCTC 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 179
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 126, 280
Bse118I RCCGGY 1 cut(s) 126
Bse21I CCTNAGG 1 cut(s) 121
Bse8I GATNNNNATC 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 179
BseGI GGATG 1 cut(s) 141
BseJI GATNNNNATC 1 cut(s) 26
BseLI CCNNNNNNNGG 3 cut(s) 112, 126, 280
BseMII CTCAG 1 cut(s) 135
BseXI GCAGC 1 cut(s) 206
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 3 cut(s) 116, 126, 178
BsiHKAI GWGCWC 2 cut(s) 105, 140
BsiSI CCGG 3 cut(s) 127, 241, 316
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 3 cut(s) 112, 126, 280
BsmAI GTCTC 2 cut(s) 55, 157
BsmBI CGTCTC 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 3 cut(s) 116, 126, 178
Bso31I GGTCTC 1 cut(s) 55
Bsp1286I GDGCHC 2 cut(s) 105, 140
Bsp143I GATC 7 cut(s) 9, 14, 21, 27, 82, 183, 219
BspACI CCGC 2 cut(s) 117, 270
BspANI GGCC 3 cut(s) 116, 126, 178
BspCNI CTCAG 1 cut(s) 134
BspFNI CGCG 1 cut(s) 32
BspPI GGATC 4 cut(s) 29, 77, 191, 214
BspTNI GGTCTC 1 cut(s) 55
BsrFI RCCGGY 1 cut(s) 126
BssAI RCCGGY 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 179
BssMI GATC 7 cut(s) 9, 14, 21, 27, 82, 183, 219
BssSI CACGAG 1 cut(s) 133
Bst2BI CACGAG 1 cut(s) 133
Bst4CI ACNGT 3 cut(s) 110, 202, 278
Bst6I CTCTTC 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 121
BstF5I GGATG 1 cut(s) 141
BstFNI CGCG 1 cut(s) 32
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 7 cut(s) 12, 17, 24, 30, 85, 186, 222
BstMAI GTCTC 2 cut(s) 55, 157
BstMBI GATC 7 cut(s) 9, 14, 21, 27, 82, 183, 219
BstNSI RCATGY 2 cut(s) 194, 292
BstSFI CTRYAG 1 cut(s) 346
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 206
Bsu36I CCTNAGG 1 cut(s) 121
BsuRI GGCC 3 cut(s) 116, 126, 178
BtsCI GGATG 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 128
CaiI CAGNNNCTG 1 cut(s) 200
CfoI GCGC 1 cut(s) 132
Cfr10I RCCGGY 1 cut(s) 126
CseI GACGC 1 cut(s) 21
CviAII CATG 2 cut(s) 191, 289
CviJI RGCY 7 cut(s) 42, 72, 116, 126, 178, 228, 334
CviKI_1 RGCY 7 cut(s) 42, 72, 116, 126, 178, 228, 334
DdeI CTNAG 1 cut(s) 121
DpnI GATC 7 cut(s) 11, 16, 23, 29, 84, 185, 221
DpnII GATC 7 cut(s) 9, 14, 21, 27, 82, 183, 219
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
EciI GGCGGA 1 cut(s) 259
Eco31I GGTCTC 1 cut(s) 55
Eco81I CCTNAGG 1 cut(s) 121
Esp3I CGTCTC 1 cut(s) 157
FaeI CATG 2 cut(s) 194, 292
FaiI YATR 4 cut(s) 188, 192, 290, 348
FaqI GGGAC 1 cut(s) 278
FatI CATG 2 cut(s) 190, 288
FbaI TGATCA 1 cut(s) 9
FblI GTMKAC 1 cut(s) 164
Fnu4HI GCNGC 2 cut(s) 117, 195
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 2 cut(s) 117, 195
GlaI GCGC 1 cut(s) 131
GluI GCNGC 2 cut(s) 117, 195
HaeIII GGCC 3 cut(s) 116, 126, 178
HapII CCGG 3 cut(s) 127, 241, 316
HgaI GACGC 1 cut(s) 21
HhaI GCGC 1 cut(s) 132
Hin1II CATG 2 cut(s) 194, 292
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HindIII AAGCTT 1 cut(s) 226
HinfI GANTC 2 cut(s) 212, 266
HpaII CCGG 3 cut(s) 127, 241, 316
Hpy166II GTNNAC 2 cut(s) 165, 205
Hpy188I TCNGA 3 cut(s) 14, 183, 300
Hpy188III TCNNGA 3 cut(s) 25, 36, 382
Hpy8I GTNNAC 2 cut(s) 165, 205
Hpy99I CGWCG 1 cut(s) 220
HpyCH4III ACNGT 3 cut(s) 110, 202, 278
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 3 cut(s) 194, 288, 342
HpyF3I CTNAG 1 cut(s) 121
HpySE526I ACGT 1 cut(s) 167
Hsp92II CATG 2 cut(s) 194, 292
HspAI GCGC 1 cut(s) 130
KroI GCCGGC 1 cut(s) 126
KroNI GCCGGC 1 cut(s) 128
Ksp22I TGATCA 1 cut(s) 9
Kzo9I GATC 7 cut(s) 9, 14, 21, 27, 82, 183, 219
LmnI GCTCC 1 cut(s) 108
Lsp1109I GCAGC 1 cut(s) 206
LweI GCATC 1 cut(s) 351
MaeII ACGT 1 cut(s) 167
MalI GATC 7 cut(s) 11, 16, 23, 29, 84, 185, 221
MboI GATC 7 cut(s) 9, 14, 21, 27, 82, 183, 219
MboII GAAGA 2 cut(s) 139, 244
MhlI GDGCHC 2 cut(s) 105, 140
MluCI AATT 2 cut(s) 256, 386
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 1 cut(s) 323
MnlI CCTC 7 cut(s) 32, 40, 130, 155, 189, 248, 347
MroNI GCCGGC 1 cut(s) 126
MseI TTAA 1 cut(s) 375
MspI CCGG 3 cut(s) 127, 241, 316
MvnI CGCG 1 cut(s) 32
NaeI GCCGGC 1 cut(s) 128
NdeII GATC 7 cut(s) 9, 14, 21, 27, 82, 183, 219
NgoMIV GCCGGC 1 cut(s) 126
NlaIII CATG 2 cut(s) 194, 292
NspI RCATGY 2 cut(s) 194, 292
PdiI GCCGGC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 212
PflMI CCANNNNNTGG 1 cut(s) 280
PkrI GCNGC 2 cut(s) 118, 196
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
PstNI CAGNNNCTG 1 cut(s) 200
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 2 cut(s) 117, 195
Sau3AI GATC 7 cut(s) 9, 14, 21, 27, 82, 183, 219
SchI GAGTC 1 cut(s) 260
SduI GDGCHC 2 cut(s) 105, 140
SetI ASST 7 cut(s) 51, 82, 100, 170, 230, 240, 365
SfaNI GCATC 1 cut(s) 351
SfcI CTRYAG 1 cut(s) 346
Sse9I AATT 2 cut(s) 256, 386
SsiI CCGC 2 cut(s) 117, 270
TaaI ACNGT 3 cut(s) 110, 202, 278
TaiI ACGT 1 cut(s) 170
TaqI TCGA 5 cut(s) 24, 45, 60, 94, 215
TasI AATT 2 cut(s) 256, 386
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TseI GCWGC 1 cut(s) 194
TspGWI ACGGA 1 cut(s) 222
Van91I CCANNNNNTGG 1 cut(s) 280
XapI RAATTY 2 cut(s) 256, 386
XceI RCATGY 2 cut(s) 194, 292
XmiI GTMKAC 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.