RchiOBHm_Chr5g0042821

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0018601
Physical Location & Seq
Forward (+)
37657817 .. 37664750
6934 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32119

Sequence Viewer

Length: 375 bp
ATGCTCGAAGCTTCTGACCCGAAAAGAGGTCGCCGACCCGGAGGAGGAACCCGACCGGAACTTTCACGTCTAGCCACCCCGCGACTGCGCATGGGCACCATCCTCTTCGTCTCCTCGCCGCCGTCACGCCTGTGGCCTCTGATCGTCCATGCACCAGACGAGGAAGAAGAATTGACGGTGAGAAAGTCGACTGTTCTAGCGAATTCACAACGTTTTCCGGTCACCGATGGAGCTGCCTGCGTATTTCCGGCCATGCTGGGCTTCGTTTTCATCTTGACTGCGTTGGTGGACCAGAAATCAAGAGGCTTGCTCGGTTATTGGCGTCAAAATCCTCAGTTCATCAGTTCAGTTCAGCAAGAAATTCCGGAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.8

Weight (kDa)

9.61

Isoelectric Point (pI)

64.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018601)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0389381 RchiOBHm_Chr5g0042821
rosa_laevigata RLG00000003038
rosa_multiflora Rmu_sc0003765.1_g000049
rosa_roxburghii Rroxscaffold_2G00138470 Rroxscaffold_4G00304200
rosa_rugosa Rorug03G0014100 Rorug05G0266500.1
rosa_samantha Rh7AG254600 Rh7DG262100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 89
AccB1I GGYRCC 1 cut(s) 95
AccI GTMKAC 1 cut(s) 188
AccII CGCG 1 cut(s) 82
AccIII TCCGGA 1 cut(s) 364
AciI CCGC 2 cut(s) 80, 119
AclI AACGTT 1 cut(s) 211
AcoI YGGCCR 1 cut(s) 249
AcsI RAATTY 2 cut(s) 202, 360
AcyI GRCGYC 1 cut(s) 322
AfiI CCNNNNNNNGG 2 cut(s) 26, 44
AjiI CACGTC 1 cut(s) 68
AleI CACNNNNGTG 1 cut(s) 130
AluBI AGCT 2 cut(s) 11, 233
AluI AGCT 2 cut(s) 11, 233
Alw26I GTCTC 1 cut(s) 115
Aor13HI TCCGGA 1 cut(s) 364
AoxI GGCC 2 cut(s) 134, 249
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 2 cut(s) 202, 360
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 289
AsuC2I CCSGG 1 cut(s) 39
AsuHPI GGTGA 2 cut(s) 190, 214
AvaII GGWCC 1 cut(s) 289
BaeGI GKGCMC 1 cut(s) 98
BanI GGYRCC 1 cut(s) 95
BbvI GCAGC 1 cut(s) 220
BccI CCATC 2 cut(s) 107, 221
BceAI ACGGC 1 cut(s) 106
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BcnI CCSGG 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 2 cut(s) 71, 197
BisI GCNGC 2 cut(s) 119, 234
BlsI GCNGC 2 cut(s) 120, 235
Bme1390I CCNGG 1 cut(s) 39
Bme18I GGWCC 1 cut(s) 289
BmgBI CACGTC 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 2 cut(s) 49, 97
BmrFI CCNGG 1 cut(s) 39
BplI GAGNNNNNCTC 2 cut(s) 294, 326
BpuMI CCSGG 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 322
BsaWI WCCGGW 3 cut(s) 55, 217, 364
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 44
BseAI TCCGGA 1 cut(s) 364
BseGI GGATG 1 cut(s) 99
BseLI CCNNNNNNNGG 2 cut(s) 26, 44
BseMII CTCAG 1 cut(s) 347
BseRI GAGGAG 2 cut(s) 57, 103
BseSI GKGCMC 1 cut(s) 98
BseXI GCAGC 1 cut(s) 220
BseYI CCCAGC 1 cut(s) 256
Bsh1236I CGCG 1 cut(s) 82
Bsh1285I CGRYCG 1 cut(s) 56
BshFI GGCC 2 cut(s) 136, 251
BshNI GGYRCC 1 cut(s) 95
BsiEI CGRYCG 1 cut(s) 56
BsiSI CCGG 5 cut(s) 39, 56, 218, 248, 365
BslI CCNNNNNNNGG 2 cut(s) 26, 44
BsmAI GTCTC 1 cut(s) 115
BsmBI CGTCTC 1 cut(s) 115
BsnI GGCC 2 cut(s) 136, 251
Bsp1286I GDGCHC 1 cut(s) 98
Bsp13I TCCGGA 1 cut(s) 364
Bsp143I GATC 1 cut(s) 141
BspACI CCGC 2 cut(s) 80, 119
BspANI GGCC 2 cut(s) 136, 251
BspCNI CTCAG 1 cut(s) 346
BspEI TCCGGA 1 cut(s) 364
BspFNI CGCG 1 cut(s) 82
BspLI GGNNCC 2 cut(s) 49, 97
BspT107I GGYRCC 1 cut(s) 95
BssMI GATC 1 cut(s) 141
BssNI GRCGYC 1 cut(s) 322
Bst4CI ACNGT 2 cut(s) 178, 193
Bst6I CTCTTC 1 cut(s) 110
BstACI GRCGYC 1 cut(s) 322
BstC8I GCNNGC 2 cut(s) 238, 308
BstDEI CTNAG 1 cut(s) 333
BstEII GGTNACC 1 cut(s) 220
BstF5I GGATG 1 cut(s) 99
BstFNI CGCG 1 cut(s) 82
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 1 cut(s) 144
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 1 cut(s) 141
BstMCI CGRYCG 1 cut(s) 56
BstPI GGTNACC 1 cut(s) 220
BstSCI CCNGG 1 cut(s) 37
BstSLI GKGCMC 1 cut(s) 98
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 220
BsuRI GGCC 2 cut(s) 136, 251
BtrI CACGTC 1 cut(s) 68
BtsCI GGATG 1 cut(s) 99
Cac8I GCNNGC 2 cut(s) 238, 308
CfoI GCGC 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 289
CseI GACGC 1 cut(s) 311
CviAII CATG 3 cut(s) 91, 149, 253
CviJI RGCY 7 cut(s) 11, 74, 136, 233, 251, 261, 306
CviKI_1 RGCY 7 cut(s) 11, 74, 136, 233, 251, 261, 306
DdeI CTNAG 1 cut(s) 333
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
EaeI YGGCCR 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
Eco47I GGWCC 1 cut(s) 289
Eco91I GGTNACC 1 cut(s) 220
EcoO65I GGTNACC 1 cut(s) 220
EcoRI GAATTC 1 cut(s) 202
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 3 cut(s) 94, 152, 256
FaiI YATR 3 cut(s) 92, 150, 254
FatI CATG 3 cut(s) 90, 148, 252
FauI CCCGC 1 cut(s) 87
FblI GTMKAC 1 cut(s) 188
Fnu4HI GCNGC 2 cut(s) 119, 234
FokI GGATG 1 cut(s) 86
Fsp4HI GCNGC 2 cut(s) 119, 234
FspBI CTAG 2 cut(s) 71, 197
FspI TGCGCA 1 cut(s) 89
GlaI GCGC 1 cut(s) 89
GluI GCNGC 2 cut(s) 119, 234
GsaI CCCAGC 1 cut(s) 260
HaeIII GGCC 2 cut(s) 136, 251
HapII CCGG 5 cut(s) 39, 56, 218, 248, 365
HgaI GACGC 1 cut(s) 311
HhaI GCGC 1 cut(s) 90
Hin1I GRCGYC 1 cut(s) 322
Hin1II CATG 3 cut(s) 94, 152, 256
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HindIII AAGCTT 1 cut(s) 9
HpaII CCGG 5 cut(s) 39, 56, 218, 248, 365
HphI GGTGA 2 cut(s) 190, 214
Hpy166II GTNNAC 2 cut(s) 189, 289
Hpy188I TCNGA 2 cut(s) 16, 141
Hpy188III TCNNGA 3 cut(s) 274, 300, 365
Hpy8I GTNNAC 2 cut(s) 189, 289
HpyCH4III ACNGT 2 cut(s) 178, 193
HpyCH4IV ACGT 2 cut(s) 67, 211
HpyCH4V TGCA 1 cut(s) 152
HpyF3I CTNAG 1 cut(s) 333
HpySE526I ACGT 2 cut(s) 67, 211
Hsp92I GRCGYC 1 cut(s) 322
Hsp92II CATG 3 cut(s) 94, 152, 256
HspAI GCGC 1 cut(s) 88
Kpn2I TCCGGA 1 cut(s) 364
Kzo9I GATC 1 cut(s) 141
LmnI GCTCC 1 cut(s) 230
LpnPI CCDG 9 cut(s) 52, 69, 143, 168, 231, 242, 250, 261, 305
Lsp1109I GCAGC 1 cut(s) 220
MaeI CTAG 2 cut(s) 71, 197
MaeII ACGT 2 cut(s) 67, 211
MaeIII GTNAC 2 cut(s) 123, 220
MalI GATC 1 cut(s) 143
MboI GATC 1 cut(s) 141
MboII GAAGA 3 cut(s) 97, 176, 179
MhlI GDGCHC 1 cut(s) 98
MluCI AATT 3 cut(s) 170, 202, 360
MnlI CCTC 9 cut(s) 20, 35, 38, 113, 124, 147, 154, 296, 342
MroI TCCGGA 1 cut(s) 364
MslI CAYNNNNRTG 1 cut(s) 130
MspI CCGG 5 cut(s) 39, 56, 218, 248, 365
MspR9I CCNGG 1 cut(s) 39
MvnI CGCG 1 cut(s) 82
NciI CCSGG 1 cut(s) 39
NdeII GATC 1 cut(s) 141
NlaIII CATG 3 cut(s) 94, 152, 256
NlaIV GGNNCC 2 cut(s) 49, 97
NmuCI GTSAC 2 cut(s) 123, 220
NsbI TGCGCA 1 cut(s) 89
OliI CACNNNNGTG 1 cut(s) 130
PkrI GCNGC 2 cut(s) 120, 235
Psp1406I AACGTT 1 cut(s) 211
PspEI GGTNACC 1 cut(s) 220
PspFI CCCAGC 1 cut(s) 256
PspN4I GGNNCC 2 cut(s) 49, 97
PspPI GGNCC 1 cut(s) 289
RseI CAYNNNNRTG 1 cut(s) 130
SalI GTCGAC 1 cut(s) 187
SatI GCNGC 2 cut(s) 119, 234
Sau3AI GATC 1 cut(s) 141
Sau96I GGNCC 1 cut(s) 289
ScrFI CCNGG 1 cut(s) 39
SduI GDGCHC 1 cut(s) 98
SetI ASST 5 cut(s) 13, 31, 70, 214, 235
SinI GGWCC 1 cut(s) 289
SmiMI CAYNNNNRTG 1 cut(s) 130
Sse9I AATT 3 cut(s) 170, 202, 360
SsiI CCGC 2 cut(s) 80, 119
SspMI CTAG 2 cut(s) 71, 197
StyD4I CCNGG 1 cut(s) 37
TaaI ACNGT 2 cut(s) 178, 193
TaiI ACGT 2 cut(s) 70, 214
TaqI TCGA 2 cut(s) 6, 188
TasI AATT 3 cut(s) 170, 202, 360
TauI GCSGC 1 cut(s) 121
TseFI GTSAC 2 cut(s) 123, 220
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 2 cut(s) 123, 220
TspDTI ATGAA 2 cut(s) 259, 328
VpaK11BI GGWCC 1 cut(s) 289
XapI RAATTY 2 cut(s) 202, 360
XmiI GTMKAC 1 cut(s) 188
XspI CTAG 2 cut(s) 71, 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.