Rroxscaffold_2G00138470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018601
Physical Location & Seq
Forward (+)
76630643 .. 76638164
7522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00138470.1

Sequence Viewer

Length: 420 bp
ATGGGCACCATCCTCTTCGTCTCCTCGCTGCCGTCACGCCTGTGGCCTCTGATCGTCCATGCACCAGACGAGGAAGAAGAATTGACGGTGAGAAAGTCGACTGTTCTAGCGAATTCACAACGTTTTCCGGTCACCGATGGAGCTGCCTGCGTTTTTCTGGCCATGCTGGGCTTCGTTTTCATCTTGGCTGCGTTGGTGGACCAGAAATCAAGAGGCTTGCTGGGTTATTGGCGTCAAAATCCTCAGCTCATCAGTTCAGTTCAGTTCAGCAAGAAATTCCGGAAAACCGAGTTGGTTTTTGAAGACAGAACCAAGGTTTTCTTTGCGATTGGGTTGCGTATCAAAATGCCGTATTTGACTACAAAATTCAGGCCAGAGAATACATCGCGCGGGAACTTACTTTATGAGTTCCGATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.95

Weight (kDa)

9.79

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018601)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0389381 RchiOBHm_Chr5g0042821
rosa_laevigata RLG00000003038
rosa_multiflora Rmu_sc0003765.1_g000049
rosa_roxburghii Rroxscaffold_2G00138470 Rroxscaffold_4G00304200
rosa_rugosa Rorug03G0014100 Rorug05G0266500.1
rosa_samantha Rh7AG254600 Rh7DG262100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 5
AccI GTMKAC 1 cut(s) 98
AccII CGCG 2 cut(s) 388, 390
AccIII TCCGGA 1 cut(s) 279
AciI CCGC 1 cut(s) 390
AclI AACGTT 1 cut(s) 121
AcoI YGGCCR 1 cut(s) 159
AcsI RAATTY 3 cut(s) 112, 275, 365
AcyI GRCGYC 1 cut(s) 232
AgsI TTSAA 1 cut(s) 302
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
AleI CACNNNNGTG 1 cut(s) 40
AluBI AGCT 2 cut(s) 143, 247
AluI AGCT 2 cut(s) 143, 247
Alw26I GTCTC 1 cut(s) 25
Aor13HI TCCGGA 1 cut(s) 279
AoxI GGCC 3 cut(s) 44, 159, 371
ApeKI GCWGC 3 cut(s) 28, 143, 188
ApoI RAATTY 3 cut(s) 112, 275, 365
AspLEI GCGC 1 cut(s) 390
AspS9I GGNCC 1 cut(s) 199
AsuHPI GGTGA 2 cut(s) 100, 124
AvaII GGWCC 1 cut(s) 199
BaeGI GKGCMC 1 cut(s) 8
BalI TGGCCA 1 cut(s) 161
BanI GGYRCC 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 309
BbvCI CCTCAGC 1 cut(s) 243
BbvI GCAGC 3 cut(s) 15, 130, 175
BccI CCATC 2 cut(s) 17, 131
BceAI ACGGC 2 cut(s) 16, 334
BcgI CGANNNNNNTGC 4 cut(s) 125, 159, 316, 350
BcoDI GTCTC 1 cut(s) 25
BfaI CTAG 1 cut(s) 107
BisI GCNGC 3 cut(s) 29, 144, 189
BlsI GCNGC 3 cut(s) 30, 145, 190
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 1 cut(s) 7
BpiI GAAGAC 1 cut(s) 309
Bpu10I CCTNAGC 1 cut(s) 243
BsaHI GRCGYC 1 cut(s) 232
BsaJI CCNNGG 1 cut(s) 312
BsaWI WCCGGW 2 cut(s) 127, 279
BseAI TCCGGA 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 312
BseGI GGATG 1 cut(s) 9
BseMII CTCAG 1 cut(s) 257
BseRI GAGGAG 1 cut(s) 13
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 3 cut(s) 15, 130, 175
BseYI CCCAGC 2 cut(s) 166, 220
Bsh1236I CGCG 2 cut(s) 388, 390
BshFI GGCC 3 cut(s) 46, 161, 373
BshNI GGYRCC 1 cut(s) 5
BsiSI CCGG 2 cut(s) 128, 280
BsmAI GTCTC 1 cut(s) 25
BsmBI CGTCTC 1 cut(s) 25
BsnI GGCC 3 cut(s) 46, 161, 373
Bsp1286I GDGCHC 1 cut(s) 8
Bsp13I TCCGGA 1 cut(s) 279
Bsp143I GATC 1 cut(s) 51
BspACI CCGC 1 cut(s) 390
BspANI GGCC 3 cut(s) 46, 161, 373
BspCNI CTCAG 1 cut(s) 256
BspEI TCCGGA 1 cut(s) 279
BspFNI CGCG 2 cut(s) 388, 390
BspLI GGNNCC 1 cut(s) 7
BspT107I GGYRCC 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 1 cut(s) 51
BssNI GRCGYC 1 cut(s) 232
BssT1I CCWWGG 1 cut(s) 312
Bst4CI ACNGT 2 cut(s) 88, 103
Bst6I CTCTTC 1 cut(s) 20
BstACI GRCGYC 1 cut(s) 232
BstC8I GCNNGC 2 cut(s) 148, 218
BstDEI CTNAG 1 cut(s) 243
BstEII GGTNACC 1 cut(s) 130
BstF5I GGATG 1 cut(s) 9
BstFNI CGCG 2 cut(s) 388, 390
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 1 cut(s) 54
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 1 cut(s) 51
BstPI GGTNACC 1 cut(s) 130
BstSLI GKGCMC 1 cut(s) 8
BstUI CGCG 2 cut(s) 388, 390
BstV1I GCAGC 3 cut(s) 15, 130, 175
BstV2I GAAGAC 1 cut(s) 309
BsuRI GGCC 3 cut(s) 46, 161, 373
BtgZI GCGATG 1 cut(s) 369
BtsCI GGATG 1 cut(s) 9
Cac8I GCNNGC 2 cut(s) 148, 218
CfoI GCGC 1 cut(s) 390
Cfr13I GGNCC 1 cut(s) 199
CseI GACGC 1 cut(s) 221
CviAII CATG 2 cut(s) 59, 163
CviJI RGCY 8 cut(s) 46, 143, 161, 171, 188, 216, 247, 373
CviKI_1 RGCY 8 cut(s) 46, 143, 161, 171, 188, 216, 247, 373
DdeI CTNAG 1 cut(s) 243
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
EaeI YGGCCR 1 cut(s) 159
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 199
Eco91I GGTNACC 1 cut(s) 130
EcoO65I GGTNACC 1 cut(s) 130
EcoRI GAATTC 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 312
Esp3I CGTCTC 1 cut(s) 25
FaeI CATG 2 cut(s) 62, 166
FaiI YATR 3 cut(s) 60, 164, 405
FalI AAGNNNNNCTT 2 cut(s) 305, 337
FatI CATG 2 cut(s) 58, 162
FauI CCCGC 1 cut(s) 383
FblI GTMKAC 1 cut(s) 98
Fnu4HI GCNGC 3 cut(s) 29, 144, 189
Fsp4HI GCNGC 3 cut(s) 29, 144, 189
FspBI CTAG 1 cut(s) 107
GlaI GCGC 1 cut(s) 389
GluI GCNGC 3 cut(s) 29, 144, 189
GsaI CCCAGC 2 cut(s) 170, 224
HaeIII GGCC 3 cut(s) 46, 161, 373
HapII CCGG 2 cut(s) 128, 280
HgaI GACGC 1 cut(s) 221
HhaI GCGC 1 cut(s) 390
Hin1I GRCGYC 1 cut(s) 232
Hin1II CATG 2 cut(s) 62, 166
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HpaII CCGG 2 cut(s) 128, 280
HphI GGTGA 2 cut(s) 100, 124
Hpy166II GTNNAC 2 cut(s) 99, 199
Hpy188I TCNGA 2 cut(s) 51, 413
Hpy188III TCNNGA 2 cut(s) 210, 280
Hpy8I GTNNAC 2 cut(s) 99, 199
HpyCH4III ACNGT 2 cut(s) 88, 103
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 1 cut(s) 62
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 1 cut(s) 121
Hsp92I GRCGYC 1 cut(s) 232
Hsp92II CATG 2 cut(s) 62, 166
HspAI GCGC 1 cut(s) 388
Kpn2I TCCGGA 1 cut(s) 279
Kzo9I GATC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 140
Lsp1109I GCAGC 3 cut(s) 15, 130, 175
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 121
MaeIII GTNAC 2 cut(s) 33, 130
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MboII GAAGA 4 cut(s) 7, 86, 89, 314
MhlI GDGCHC 1 cut(s) 8
MlsI TGGCCA 1 cut(s) 161
MluCI AATT 4 cut(s) 80, 112, 275, 365
MluNI TGGCCA 1 cut(s) 161
MnlI CCTC 6 cut(s) 23, 34, 57, 64, 206, 252
Mox20I TGGCCA 1 cut(s) 161
MroI TCCGGA 1 cut(s) 279
MscI TGGCCA 1 cut(s) 161
MslI CAYNNNNRTG 1 cut(s) 40
Msp20I TGGCCA 1 cut(s) 161
MspI CCGG 2 cut(s) 128, 280
MvnI CGCG 2 cut(s) 388, 390
NdeII GATC 1 cut(s) 51
NlaIII CATG 2 cut(s) 62, 166
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 2 cut(s) 33, 130
OliI CACNNNNGTG 1 cut(s) 40
PkrI GCNGC 3 cut(s) 30, 145, 190
Psp1406I AACGTT 1 cut(s) 121
PspEI GGTNACC 1 cut(s) 130
PspFI CCCAGC 2 cut(s) 166, 220
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 199
RseI CAYNNNNRTG 1 cut(s) 40
SalI GTCGAC 1 cut(s) 97
SatI GCNGC 3 cut(s) 29, 144, 189
Sau3AI GATC 1 cut(s) 51
Sau96I GGNCC 1 cut(s) 199
SduI GDGCHC 1 cut(s) 8
SetI ASST 4 cut(s) 124, 145, 249, 318
SinI GGWCC 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 40
Sse9I AATT 4 cut(s) 80, 112, 275, 365
SsiI CCGC 1 cut(s) 390
SspMI CTAG 1 cut(s) 107
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 2 cut(s) 88, 103
TaiI ACGT 1 cut(s) 124
TaqI TCGA 1 cut(s) 98
TasI AATT 4 cut(s) 80, 112, 275, 365
TseFI GTSAC 2 cut(s) 33, 130
TseI GCWGC 3 cut(s) 28, 143, 188
Tsp45I GTSAC 2 cut(s) 33, 130
TspDTI ATGAA 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 199
XapI RAATTY 3 cut(s) 112, 275, 365
XmiI GTMKAC 1 cut(s) 98
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.