RLG00000003038

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0018601
Physical Location & Seq
Forward (+)
43514734 .. 43515930
1197 bp
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UTR
Exon/CDS
Intron
RLM00000003038

Sequence Viewer

Length: 513 bp
ATGTCGCAGGGGTGTCGGCAGATGTGTGCGGGACTGTCGGCAGCTATCAGCAGGTGTGTGCAGGGCTATCGGCAGGTCTCGGCAGGTGCTCGGCAGGTGTCGGTAGGTGCTCGGCAGGTGTCAGCAGGTCTCAGCAGGTGCTCGGCAAGTCTCAGCAGGTCTCGGCAGGTGTCGGTAGGTCTCGGCAGCTGCTCGGCAGGTCTCGGCAGATGCTCAGCAGGTGTCGGCAGGTCTCGGCAGGTGCTCGGCAGCTGTGAGAGGCGCCGGAGGCAAACTAAAGAAGTCACCATCCTGCAAGCCGTTGACGACTGCTTACTCCTCCATGACATCGCCGGCTTCAGCTCCTCCTCGAAGAGGGAGAACTTATGGCTTCAGCTCCTCCGTCGTAGCCATTGGCACCATGTACTATCAGAATTGGATCTATGGCTCTGCTTGTGGGTTTCAGTAGCTGGGTCGAACAAGGAGGTTGAAGATGGAGTGCCAAAGGTTGAAGATGGAGAAGAGGACGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

18.4

Weight (kDa)

8.84

Isoelectric Point (pI)

72.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018601)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0389381 RchiOBHm_Chr5g0042821
rosa_laevigata RLG00000003038
rosa_multiflora Rmu_sc0003765.1_g000049
rosa_roxburghii Rroxscaffold_2G00138470 Rroxscaffold_4G00304200
rosa_rugosa Rorug03G0014100 Rorug05G0266500.1
rosa_samantha Rh7AG254600 Rh7DG262100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 8 cut(s) 42, 74, 85, 106, 126, 157, 209, 229
AccB1I GGYRCC 2 cut(s) 261, 396
AciI CCGC 1 cut(s) 29
AclWI GGATC 1 cut(s) 426
AcuI CTGAAG 2 cut(s) 322, 356
AcyI GRCGYC 1 cut(s) 262
AfaI GTAC 1 cut(s) 405
AfiI CCNNNNNNNGG 1 cut(s) 354
AgsI TTSAA 2 cut(s) 470, 491
AluBI AGCT 6 cut(s) 44, 189, 252, 342, 376, 449
AluI AGCT 6 cut(s) 44, 189, 252, 342, 376, 449
Alw21I GWGCWC 4 cut(s) 91, 112, 143, 246
Alw26I GTCTC 7 cut(s) 82, 134, 155, 165, 185, 206, 237
AlwI GGATC 1 cut(s) 426
AlwNI CAGNNNCTG 1 cut(s) 449
ApeKI GCWGC 4 cut(s) 41, 186, 189, 249
AspLEI GCGC 1 cut(s) 264
AsuHPI GGTGA 1 cut(s) 277
BanI GGYRCC 2 cut(s) 261, 396
Bbv12I GWGCWC 4 cut(s) 91, 112, 143, 246
BbvI GCAGC 4 cut(s) 53, 176, 198, 261
BccI CCATC 3 cut(s) 296, 467, 488
BceAI ACGGC 1 cut(s) 284
BcgI CGANNNNNNTGC 3 cut(s) 30, 50, 84
BcoDI GTCTC 7 cut(s) 82, 134, 155, 165, 185, 206, 237
BfaI CTAG 1 cut(s) 511
BfoI RGCGCY 1 cut(s) 265
BisI GCNGC 4 cut(s) 42, 187, 190, 250
BlpI GCTNAGC 1 cut(s) 214
BlsI GCNGC 4 cut(s) 43, 188, 191, 251
BmiI GGNNCC 2 cut(s) 263, 398
BmsI GCATC 1 cut(s) 200
Bpu1102I GCTNAGC 1 cut(s) 214
BsaHI GRCGYC 1 cut(s) 262
BsaI GGTCTC 6 cut(s) 82, 134, 165, 185, 206, 237
Bsc4I CCNNNNNNNGG 1 cut(s) 354
Bse118I RCCGGY 1 cut(s) 332
BseGI GGATG 1 cut(s) 288
BseLI CCNNNNNNNGG 1 cut(s) 354
BseMII CTCAG 3 cut(s) 145, 166, 228
BseRI GAGGAG 4 cut(s) 308, 334, 337, 368
BseXI GCAGC 4 cut(s) 53, 176, 198, 261
BseYI CCCAGC 1 cut(s) 449
BsgI GTGCAG 1 cut(s) 80
BshNI GGYRCC 2 cut(s) 261, 396
BsiHKAI GWGCWC 4 cut(s) 91, 112, 143, 246
BsiSI CCGG 2 cut(s) 265, 333
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 354
BsmAI GTCTC 7 cut(s) 82, 134, 155, 165, 185, 206, 237
BsmFI GGGAC 1 cut(s) 45
Bso31I GGTCTC 6 cut(s) 82, 134, 165, 185, 206, 237
Bsp1286I GDGCHC 4 cut(s) 91, 112, 143, 246
Bsp143I GATC 1 cut(s) 418
Bsp1720I GCTNAGC 1 cut(s) 214
BspACI CCGC 1 cut(s) 29
BspCNI CTCAG 3 cut(s) 144, 165, 227
BspLI GGNNCC 2 cut(s) 263, 398
BspPI GGATC 1 cut(s) 426
BspT107I GGYRCC 2 cut(s) 261, 396
BspTNI GGTCTC 6 cut(s) 82, 134, 165, 185, 206, 237
BsrFI RCCGGY 1 cut(s) 332
BssAI RCCGGY 1 cut(s) 332
BssMI GATC 1 cut(s) 418
BssNI GRCGYC 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 36
Bst6I CTCTTC 2 cut(s) 347, 495
BstACI GRCGYC 1 cut(s) 262
BstC8I GCNNGC 2 cut(s) 297, 334
BstDEI CTNAG 3 cut(s) 131, 152, 214
BstENI CCTNNNNNAGG 1 cut(s) 352
BstF5I GGATG 1 cut(s) 288
BstH2I RGCGCY 1 cut(s) 265
BstHHI GCGC 1 cut(s) 264
BstKTI GATC 1 cut(s) 421
BstMAI GTCTC 7 cut(s) 82, 134, 155, 165, 185, 206, 237
BstMBI GATC 1 cut(s) 418
BstMWI GCNNNNNNNGC 1 cut(s) 268
BstV1I GCAGC 4 cut(s) 53, 176, 198, 261
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
BtgZI GCGATG 1 cut(s) 313
BtsCI GGATG 1 cut(s) 288
Cac8I GCNNGC 2 cut(s) 297, 334
CaiI CAGNNNCTG 1 cut(s) 449
CfoI GCGC 1 cut(s) 264
Cfr10I RCCGGY 1 cut(s) 332
Csp6I GTAC 1 cut(s) 404
CviAII CATG 2 cut(s) 323, 401
CviQI GTAC 1 cut(s) 404
DdeI CTNAG 3 cut(s) 131, 152, 214
DinI GGCGCC 1 cut(s) 263
DpnI GATC 1 cut(s) 420
DpnII GATC 1 cut(s) 418
Eam1104I CTCTTC 2 cut(s) 347, 495
EarI CTCTTC 2 cut(s) 347, 495
Eco31I GGTCTC 6 cut(s) 82, 134, 165, 185, 206, 237
Eco57I CTGAAG 2 cut(s) 322, 356
EcoNI CCTNNNNNAGG 1 cut(s) 352
EgeI GGCGCC 1 cut(s) 263
EheI GGCGCC 1 cut(s) 263
FaeI CATG 2 cut(s) 326, 404
FaiI YATR 4 cut(s) 324, 367, 402, 424
FaqI GGGAC 1 cut(s) 45
FatI CATG 2 cut(s) 322, 400
FauI CCCGC 1 cut(s) 22
Fnu4HI GCNGC 4 cut(s) 42, 187, 190, 250
FokI GGATG 1 cut(s) 275
Fsp4HI GCNGC 4 cut(s) 42, 187, 190, 250
FspBI CTAG 1 cut(s) 511
GlaI GCGC 1 cut(s) 263
GluI GCNGC 4 cut(s) 42, 187, 190, 250
GsaI CCCAGC 1 cut(s) 453
HaeII RGCGCY 1 cut(s) 265
HapII CCGG 2 cut(s) 265, 333
HhaI GCGC 1 cut(s) 264
Hin1I GRCGYC 1 cut(s) 262
Hin1II CATG 2 cut(s) 326, 404
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HpaII CCGG 2 cut(s) 265, 333
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 1 cut(s) 412
Hpy8I GTNNAC 1 cut(s) 304
Hpy99I CGWCG 1 cut(s) 387
HpyCH4III ACNGT 1 cut(s) 36
HpyCH4V TGCA 2 cut(s) 61, 295
HpyF10VI GCNNNNNNNGC 1 cut(s) 268
HpyF3I CTNAG 3 cut(s) 131, 152, 214
Hsp92I GRCGYC 1 cut(s) 262
Hsp92II CATG 2 cut(s) 326, 404
HspAI GCGC 1 cut(s) 262
KasI GGCGCC 1 cut(s) 261
KroI GCCGGC 1 cut(s) 332
KroNI GCCGGC 1 cut(s) 334
Kzo9I GATC 1 cut(s) 418
LmnI GCTCC 2 cut(s) 347, 381
Lsp1109I GCAGC 4 cut(s) 53, 176, 198, 261
LweI GCATC 1 cut(s) 200
MaeI CTAG 1 cut(s) 511
MaeIII GTNAC 1 cut(s) 283
MalI GATC 1 cut(s) 420
MboI GATC 1 cut(s) 418
MboII GAAGA 4 cut(s) 364, 482, 503, 512
MflI RGATCY 1 cut(s) 418
MhlI GDGCHC 4 cut(s) 91, 112, 143, 246
MluCI AATT 1 cut(s) 413
Mly113I GGCGCC 1 cut(s) 262
MnlI CCTC 9 cut(s) 252, 261, 329, 348, 355, 358, 389, 457, 496
MroNI GCCGGC 1 cut(s) 332
MspA1I CMGCKG 2 cut(s) 189, 252
MspI CCGG 2 cut(s) 265, 333
MwoI GCNNNNNNNGC 1 cut(s) 268
NaeI GCCGGC 1 cut(s) 334
NarI GGCGCC 1 cut(s) 262
NdeII GATC 1 cut(s) 418
NgoMIV GCCGGC 1 cut(s) 332
NlaIII CATG 2 cut(s) 326, 404
NlaIV GGNNCC 2 cut(s) 263, 398
NmuCI GTSAC 1 cut(s) 283
PaqCI CACCTGC 8 cut(s) 42, 74, 85, 106, 126, 157, 209, 229
PdiI GCCGGC 1 cut(s) 334
PkrI GCNGC 4 cut(s) 43, 188, 191, 251
PluTI GGCGCC 1 cut(s) 265
PspFI CCCAGC 1 cut(s) 449
PspN4I GGNNCC 2 cut(s) 263, 398
PstNI CAGNNNCTG 1 cut(s) 449
PsuI RGATCY 1 cut(s) 418
PvuII CAGCTG 2 cut(s) 189, 252
RsaI GTAC 1 cut(s) 405
RsaNI GTAC 1 cut(s) 404
SatI GCNGC 4 cut(s) 42, 187, 190, 250
Sau3AI GATC 1 cut(s) 418
SduI GDGCHC 4 cut(s) 91, 112, 143, 246
SfaNI GCATC 1 cut(s) 200
SfoI GGCGCC 1 cut(s) 263
Sse9I AATT 1 cut(s) 413
SsiI CCGC 1 cut(s) 29
SspDI GGCGCC 1 cut(s) 261
SspMI CTAG 1 cut(s) 511
TaaI ACNGT 1 cut(s) 36
TaqI TCGA 2 cut(s) 350, 455
TasI AATT 1 cut(s) 413
TatI WGTACW 1 cut(s) 403
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 4 cut(s) 41, 186, 189, 249
Tsp45I GTSAC 1 cut(s) 283
TspGWI ACGGA 1 cut(s) 371
XagI CCTNNNNNAGG 1 cut(s) 352
XspI CTAG 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.