Rh7AG254600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0018601
Physical Location & Seq
Reverse (-)
25648733 .. 25650376
1644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG254600.1

Sequence Viewer

Length: 309 bp
ATGACAATTTTGGGCTCCAAAAAATTAAAAACTACGTACTCCCACTCTCTCTCCCTCTCTGATCTAAGCCGTGAGAGGCGCCGGAGGCAAACTAAAGAAGTCACCATCCCGCAAGCCGCTGACGACTGCTTACTCCTCCATGACATCGCCGGCTTCAGCTCCTCCTCGAAGAGGGAGAACTTGCGACTTCAGCCCCTCCGTCGTAGCCATTGGCACCATGTACTATCAGAATTGGATCTATGGCTCCGCTTGTGGGTTTCAGTAGCTGGGTCGAACAAGGAGGTTGAAGATGGAGAAGAGGACGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.72

Weight (kDa)

7.97

Isoelectric Point (pI)

79.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018601)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0389381 RchiOBHm_Chr5g0042821
rosa_laevigata RLG00000003038
rosa_multiflora Rmu_sc0003765.1_g000049
rosa_roxburghii Rroxscaffold_2G00138470 Rroxscaffold_4G00304200
rosa_rugosa Rorug03G0014100 Rorug05G0266500.1
rosa_samantha Rh7AG254600 Rh7DG262100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 78, 213
AciI CCGC 3 cut(s) 110, 117, 247
AclWI GGATC 1 cut(s) 243
AcuI CTGAAG 2 cut(s) 139, 173
AcyI GRCGYC 1 cut(s) 79
AfaI GTAC 2 cut(s) 38, 222
AfiI CCNNNNNNNGG 2 cut(s) 171, 253
AgsI TTSAA 1 cut(s) 287
AluBI AGCT 2 cut(s) 159, 266
AluI AGCT 2 cut(s) 159, 266
AlwI GGATC 1 cut(s) 243
AlwNI CAGNNNCTG 1 cut(s) 266
AspLEI GCGC 1 cut(s) 81
AsuHPI GGTGA 1 cut(s) 94
BanI GGYRCC 2 cut(s) 78, 213
BanII GRGCYC 1 cut(s) 17
BccI CCATC 2 cut(s) 113, 284
BceAI ACGGC 1 cut(s) 54
BfaI CTAG 1 cut(s) 307
BfoI RGCGCY 1 cut(s) 82
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
BmiI GGNNCC 4 cut(s) 16, 80, 215, 245
BsaAI YACGTR 1 cut(s) 36
BsaHI GRCGYC 1 cut(s) 79
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 253
Bse118I RCCGGY 1 cut(s) 149
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 2 cut(s) 171, 253
BseRI GAGGAG 3 cut(s) 125, 151, 154
BseYI CCCAGC 1 cut(s) 266
BshNI GGYRCC 2 cut(s) 78, 213
BsiSI CCGG 2 cut(s) 82, 150
BslI CCNNNNNNNGG 2 cut(s) 171, 253
Bsp1286I GDGCHC 1 cut(s) 17
Bsp143I GATC 2 cut(s) 61, 235
BspACI CCGC 3 cut(s) 110, 117, 247
BspLI GGNNCC 4 cut(s) 16, 80, 215, 245
BspPI GGATC 1 cut(s) 243
BspT107I GGYRCC 2 cut(s) 78, 213
BsrFI RCCGGY 1 cut(s) 149
BssAI RCCGGY 1 cut(s) 149
BssMI GATC 2 cut(s) 61, 235
BssNI GRCGYC 1 cut(s) 79
Bst6I CTCTTC 2 cut(s) 164, 291
BstACI GRCGYC 1 cut(s) 79
BstBAI YACGTR 1 cut(s) 36
BstC8I GCNNGC 2 cut(s) 114, 151
BstDEI CTNAG 1 cut(s) 65
BstENI CCTNNNNNAGG 1 cut(s) 169
BstF5I GGATG 1 cut(s) 105
BstH2I RGCGCY 1 cut(s) 82
BstHHI GCGC 1 cut(s) 81
BstKTI GATC 2 cut(s) 64, 238
BstMBI GATC 2 cut(s) 61, 235
BstMWI GCNNNNNNNGC 2 cut(s) 85, 190
BstSNI TACGTA 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BtgZI GCGATG 1 cut(s) 130
BtsCI GGATG 1 cut(s) 105
Cac8I GCNNGC 2 cut(s) 114, 151
CaiI CAGNNNCTG 1 cut(s) 266
CfoI GCGC 1 cut(s) 81
Cfr10I RCCGGY 1 cut(s) 149
Csp6I GTAC 2 cut(s) 37, 221
CviAII CATG 2 cut(s) 140, 218
CviQI GTAC 2 cut(s) 37, 221
DdeI CTNAG 1 cut(s) 65
DinI GGCGCC 1 cut(s) 80
DpnI GATC 2 cut(s) 63, 237
DpnII GATC 2 cut(s) 61, 235
Eam1104I CTCTTC 2 cut(s) 164, 291
EarI CTCTTC 2 cut(s) 164, 291
Eco105I TACGTA 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 17
Eco57I CTGAAG 2 cut(s) 139, 173
EcoNI CCTNNNNNAGG 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 17
EgeI GGCGCC 1 cut(s) 80
EheI GGCGCC 1 cut(s) 80
FaeI CATG 2 cut(s) 143, 221
FaiI YATR 3 cut(s) 141, 219, 241
FatI CATG 2 cut(s) 139, 217
FauI CCCGC 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 1 cut(s) 92
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 1 cut(s) 307
GlaI GCGC 1 cut(s) 80
GluI GCNGC 1 cut(s) 117
GsaI CCCAGC 1 cut(s) 270
HaeII RGCGCY 1 cut(s) 82
HapII CCGG 2 cut(s) 82, 150
HhaI GCGC 1 cut(s) 81
Hin1I GRCGYC 1 cut(s) 79
Hin1II CATG 2 cut(s) 143, 221
Hin6I GCGC 1 cut(s) 79
HinP1I GCGC 1 cut(s) 79
HpaII CCGG 2 cut(s) 82, 150
HphI GGTGA 1 cut(s) 94
Hpy188I TCNGA 2 cut(s) 61, 229
Hpy99I CGWCG 1 cut(s) 204
HpyCH4IV ACGT 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 190
HpyF3I CTNAG 1 cut(s) 65
HpySE526I ACGT 1 cut(s) 35
Hsp92I GRCGYC 1 cut(s) 79
Hsp92II CATG 2 cut(s) 143, 221
HspAI GCGC 1 cut(s) 79
KasI GGCGCC 1 cut(s) 78
KroI GCCGGC 1 cut(s) 149
KroNI GCCGGC 1 cut(s) 151
Kzo9I GATC 2 cut(s) 61, 235
LmnI GCTCC 3 cut(s) 20, 164, 249
LpnPI CCDG 3 cut(s) 95, 163, 252
MaeI CTAG 1 cut(s) 307
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 100
MalI GATC 2 cut(s) 63, 237
MboI GATC 2 cut(s) 61, 235
MboII GAAGA 3 cut(s) 181, 299, 308
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 3 cut(s) 6, 23, 230
Mly113I GGCGCC 1 cut(s) 79
MroNI GCCGGC 1 cut(s) 149
MseI TTAA 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 2 cut(s) 82, 150
MwoI GCNNNNNNNGC 2 cut(s) 85, 190
NaeI GCCGGC 1 cut(s) 151
NarI GGCGCC 1 cut(s) 79
NdeII GATC 2 cut(s) 61, 235
NgoMIV GCCGGC 1 cut(s) 149
NlaIII CATG 2 cut(s) 143, 221
NlaIV GGNNCC 4 cut(s) 16, 80, 215, 245
NmuCI GTSAC 1 cut(s) 100
PdiI GCCGGC 1 cut(s) 151
PkrI GCNGC 1 cut(s) 118
PluTI GGCGCC 1 cut(s) 82
Ppu21I YACGTR 1 cut(s) 36
PspFI CCCAGC 1 cut(s) 266
PspN4I GGNNCC 4 cut(s) 16, 80, 215, 245
PstNI CAGNNNCTG 1 cut(s) 266
PsuI RGATCY 1 cut(s) 235
RsaI GTAC 2 cut(s) 38, 222
RsaNI GTAC 2 cut(s) 37, 221
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 2 cut(s) 61, 235
SduI GDGCHC 1 cut(s) 17
SetI ASST 4 cut(s) 38, 161, 268, 285
SfoI GGCGCC 1 cut(s) 80
SnaBI TACGTA 1 cut(s) 36
Sse9I AATT 3 cut(s) 6, 23, 230
SsiI CCGC 3 cut(s) 110, 117, 247
SspDI GGCGCC 1 cut(s) 78
SspMI CTAG 1 cut(s) 307
TaiI ACGT 1 cut(s) 38
TaqI TCGA 2 cut(s) 167, 272
TasI AATT 3 cut(s) 6, 23, 230
TatI WGTACW 1 cut(s) 220
TauI GCSGC 1 cut(s) 119
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TseFI GTSAC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 100
TspGWI ACGGA 1 cut(s) 188
XagI CCTNNNNNAGG 1 cut(s) 169
XspI CTAG 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.