RchiOBHm_Chr4g0401431

Molybdate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0019926
Physical Location & Seq
Reverse (-)
19675037 .. 19675312
276 bp
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UTR
Exon/CDS
Intron
PRQ37334

Sequence Viewer

Length: 276 bp
ATGCTGGGCTGCAATATCTCCACCATAGAAGAAACTTCACTCTCCTGGAACCGGTGGTGCCACCACGTCTGCCTTAAGACGACCCTCTGCACCAAACTCTCCTGTGCAGTCGGCGACCTCGGAACCTACATCCCCATCGTCTTGGCCCTCACCTTAGTCTCCCACCTCGACCTCAGCACCACCCTCATCTTCACCTCCCTCTACAACTTCGCCACCGGCCTCCTTTTCTGCATCCCCATGCCCCTCCAAAATCCAAGTGCTCAAAATCACATGTGA

Protein Analysis

91

Amino Acids

10.04

Weight (kDa)

6.36

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_MOT1 PF16983 33 - 81 4.9e-10 Molybdate transporter of MFS superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019926)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0401431
rosa_laevigata RLG00000014173
rosa_multiflora Rmu_sc0008241.1_g000005 Rmu_sc0028968.1_g000004
rosa_roxburghii Rroxscaffold_7G00166610
rosa_samantha Rh3DG232100 Rh4DG045900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 57
AfiI CCNNNNNNNGG 1 cut(s) 51
AflII CTTAAG 1 cut(s) 74
AflIII ACRYGT 1 cut(s) 270
AgeI ACCGGT 1 cut(s) 51
AjiI CACGTC 1 cut(s) 67
AjnI CCWGG 1 cut(s) 44
Alw21I GWGCWC 1 cut(s) 262
Alw26I GTCTC 1 cut(s) 163
AoxI GGCC 2 cut(s) 144, 217
ApeKI GCWGC 1 cut(s) 9
AsiGI ACCGGT 1 cut(s) 51
AspS9I GGNCC 1 cut(s) 145
AsuHPI GGTGA 2 cut(s) 142, 184
BanI GGYRCC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 262
BbvCI CCTCAGC 1 cut(s) 173
BccI CCATC 1 cut(s) 143
BciT130I CCWGG 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 163
BfrI CTTAAG 1 cut(s) 74
BisI GCNGC 1 cut(s) 10
BlsI GCNGC 1 cut(s) 11
Bme1390I CCNGG 1 cut(s) 46
BmgBI CACGTC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 3 cut(s) 50, 59, 124
BmrFI CCNGG 1 cut(s) 46
BmsI GCATC 1 cut(s) 240
Bpu10I CCTNAGC 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 118
BsaWI WCCGGW 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 51
Bse118I RCCGGY 2 cut(s) 51, 215
BseBI CCWGG 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 2 cut(s) 129, 231
BseLI CCNNNNNNNGG 1 cut(s) 51
BseMII CTCAG 1 cut(s) 187
BseYI CCCAGC 1 cut(s) 4
BsgI GTGCAG 2 cut(s) 73, 126
BshFI GGCC 2 cut(s) 146, 219
BshNI GGYRCC 1 cut(s) 57
BshTI ACCGGT 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 262
BsiSI CCGG 2 cut(s) 52, 216
BslI CCNNNNNNNGG 1 cut(s) 51
BsmAI GTCTC 1 cut(s) 163
BsnI GGCC 2 cut(s) 146, 219
Bsp1286I GDGCHC 1 cut(s) 262
BspANI GGCC 2 cut(s) 146, 219
BspCNI CTCAG 1 cut(s) 186
BspLI GGNNCC 3 cut(s) 50, 59, 124
BspT107I GGYRCC 1 cut(s) 57
BspTI CTTAAG 1 cut(s) 74
BsrFI RCCGGY 2 cut(s) 51, 215
BssAI RCCGGY 2 cut(s) 51, 215
BssECI CCNNGG 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 46
BstAFI CTTAAG 1 cut(s) 74
BstDEI CTNAG 2 cut(s) 154, 173
BstF5I GGATG 2 cut(s) 129, 231
BstMAI GTCTC 1 cut(s) 163
BstNI CCWGG 1 cut(s) 46
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 44
BstXI CCANNNNNNTGG 1 cut(s) 142
BsuRI GGCC 2 cut(s) 146, 219
BtrI CACGTC 1 cut(s) 67
BtsCI GGATG 2 cut(s) 129, 231
Cfr10I RCCGGY 2 cut(s) 51, 215
Cfr13I GGNCC 1 cut(s) 145
CspAI ACCGGT 1 cut(s) 51
CviAII CATG 2 cut(s) 238, 271
CviJI RGCY 3 cut(s) 9, 146, 219
CviKI_1 RGCY 3 cut(s) 9, 146, 219
DdeI CTNAG 2 cut(s) 154, 173
EcoRII CCWGG 1 cut(s) 44
FaeI CATG 2 cut(s) 241, 274
FaiI YATR 3 cut(s) 26, 239, 272
FatI CATG 2 cut(s) 237, 270
Fnu4HI GCNGC 1 cut(s) 10
FokI GGATG 2 cut(s) 116, 218
Fsp4HI GCNGC 1 cut(s) 10
GluI GCNGC 1 cut(s) 10
GsaI CCCAGC 1 cut(s) 8
HaeIII GGCC 2 cut(s) 146, 219
HapII CCGG 2 cut(s) 52, 216
Hin1II CATG 2 cut(s) 241, 274
HpaII CCGG 2 cut(s) 52, 216
HphI GGTGA 2 cut(s) 142, 184
Hpy188I TCNGA 1 cut(s) 122
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 4 cut(s) 12, 90, 107, 231
HpyF3I CTNAG 2 cut(s) 154, 173
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 2 cut(s) 241, 274
LpnPI CCDG 5 cut(s) 31, 58, 65, 115, 229
LweI GCATC 1 cut(s) 240
MaeII ACGT 1 cut(s) 66
MboII GAAGA 2 cut(s) 41, 181
MhlI GDGCHC 1 cut(s) 262
MseI TTAA 1 cut(s) 75
MslI CAYNNNNRTG 1 cut(s) 236
MspCI CTTAAG 1 cut(s) 74
MspI CCGG 2 cut(s) 52, 216
MspR9I CCNGG 1 cut(s) 46
MvaI CCWGG 1 cut(s) 46
NlaIII CATG 2 cut(s) 241, 274
NlaIV GGNNCC 3 cut(s) 50, 59, 124
NspI RCATGY 1 cut(s) 274
PciI ACATGT 1 cut(s) 270
PfoI TCCNGGA 1 cut(s) 44
PinAI ACCGGT 1 cut(s) 51
PkrI GCNGC 1 cut(s) 11
PscI ACATGT 1 cut(s) 270
Psp6I CCWGG 1 cut(s) 44
PspFI CCCAGC 1 cut(s) 4
PspGI CCWGG 1 cut(s) 44
PspN4I GGNNCC 3 cut(s) 50, 59, 124
PspPI GGNCC 1 cut(s) 145
RseI CAYNNNNRTG 1 cut(s) 236
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 1 cut(s) 10
Sau96I GGNCC 1 cut(s) 145
ScrFI CCNGG 1 cut(s) 46
SduI GDGCHC 1 cut(s) 262
SetI ASST 7 cut(s) 69, 120, 128, 155, 168, 174, 197
SfaNI GCATC 1 cut(s) 240
SmiMI CAYNNNNRTG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
StyD4I CCNGG 1 cut(s) 44
TaiI ACGT 1 cut(s) 69
TaqI TCGA 1 cut(s) 168
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TseI GCWGC 1 cut(s) 9
Vha464I CTTAAG 1 cut(s) 74
XceI RCATGY 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.