RLG00000014173

Molybdate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0019926
Physical Location & Seq
Reverse (-)
48619294 .. 48620391
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014173

Sequence Viewer

Length: 411 bp
ATGGCAGCTAGCCCACTCGACTCAACCCTCACTGCCTCAACCATCTCAGGTTCCAACCCTCCTCTGATTCCTCCAACGTCGTCGACGCCGTCAGCCCCGGCGTCCCTGGTGTCTCCAAGTTCATCATCAAATTTTACGCTGGGCTGCAATATCTCCACCATAGAAGAAACTTCACTCTCCTGGAACCGGTGGCCCCACCACGTCCGCCTCAAGACCACCCTCTGCACGGAACTCTTCGGCGCAGTTGGCGACCTCGGAACCTACATCCCCGTTGTCTTGGCCCTCACCTTAGTCTCCCACCTCGACCTCAGCACCACCCTCATCTTCACCTCCCTCTACAACTTCGCCACCGGCCTCCTCTTCGGCATCCCCATGCCCCTCCAAAATCCAAGTGCTCAAAATCACATGTGA

Protein Analysis

137

Amino Acids

14.33

Weight (kDa)

5.63

Isoelectric Point (pI)

51.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_MOT1 PF16983 77 - 126 9.6e-11 Molybdate transporter of MFS superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019926)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0401431
rosa_laevigata RLG00000014173
rosa_multiflora Rmu_sc0008241.1_g000005 Rmu_sc0028968.1_g000004
rosa_roxburghii Rroxscaffold_7G00166610
rosa_samantha Rh3DG232100 Rh4DG045900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 83
AciI CCGC 1 cut(s) 205
AcsI RAATTY 1 cut(s) 130
AcyI GRCGYC 2 cut(s) 86, 101
AfiI CCNNNNNNNGG 2 cut(s) 186, 226
AflIII ACRYGT 1 cut(s) 405
AgeI ACCGGT 1 cut(s) 186
AjiI CACGTC 1 cut(s) 202
AjnI CCWGG 2 cut(s) 105, 179
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
Alw21I GWGCWC 1 cut(s) 397
Alw26I GTCTC 2 cut(s) 117, 298
AoxI GGCC 3 cut(s) 191, 279, 352
ApeKI GCWGC 2 cut(s) 5, 144
ApoI RAATTY 1 cut(s) 130
AsiGI ACCGGT 1 cut(s) 186
AspLEI GCGC 1 cut(s) 242
AspS9I GGNCC 2 cut(s) 192, 280
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 2 cut(s) 277, 319
AsuNHI GCTAGC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 397
BbvCI CCTCAGC 1 cut(s) 308
BbvI GCAGC 2 cut(s) 17, 131
BccI CCATC 1 cut(s) 50
BceAI ACGGC 1 cut(s) 73
BciT130I CCWGG 2 cut(s) 107, 181
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 2 cut(s) 117, 298
BfaI CTAG 1 cut(s) 9
BisI GCNGC 2 cut(s) 6, 145
BlsI GCNGC 2 cut(s) 7, 146
Bme1390I CCNGG 3 cut(s) 98, 107, 181
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 2 cut(s) 192, 280
BmiI GGNNCC 4 cut(s) 52, 185, 194, 259
BmrFI CCNGG 3 cut(s) 98, 107, 181
BmsI GCATC 1 cut(s) 375
BmtI GCTAGC 1 cut(s) 12
Bpu10I CCTNAGC 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 98
BsaHI GRCGYC 2 cut(s) 86, 101
BsaJI CCNNGG 3 cut(s) 96, 105, 253
BsaWI WCCGGW 1 cut(s) 186
Bsc4I CCNNNNNNNGG 2 cut(s) 186, 226
Bse118I RCCGGY 2 cut(s) 186, 350
BseBI CCWGG 2 cut(s) 107, 181
BseDI CCNNGG 3 cut(s) 96, 105, 253
BseGI GGATG 2 cut(s) 264, 366
BseLI CCNNNNNNNGG 2 cut(s) 186, 226
BseMII CTCAG 2 cut(s) 60, 322
BseRI GAGGAG 2 cut(s) 51, 347
BseXI GCAGC 2 cut(s) 17, 131
BseYI CCCAGC 1 cut(s) 139
BsgI GTGCAG 1 cut(s) 208
BshFI GGCC 3 cut(s) 193, 281, 354
BshTI ACCGGT 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 397
BsiSI CCGG 3 cut(s) 98, 187, 351
BslFI GGGAC 1 cut(s) 88
BslI CCNNNNNNNGG 2 cut(s) 186, 226
BsmAI GTCTC 2 cut(s) 117, 298
BsmFI GGGAC 1 cut(s) 88
BsnI GGCC 3 cut(s) 193, 281, 354
Bsp1286I GDGCHC 1 cut(s) 397
BspACI CCGC 1 cut(s) 205
BspANI GGCC 3 cut(s) 193, 281, 354
BspCNI CTCAG 2 cut(s) 59, 321
BspLI GGNNCC 4 cut(s) 52, 185, 194, 259
BspOI GCTAGC 1 cut(s) 12
BsrFI RCCGGY 2 cut(s) 186, 350
BssAI RCCGGY 2 cut(s) 186, 350
BssECI CCNNGG 3 cut(s) 96, 105, 253
BssNI GRCGYC 2 cut(s) 86, 101
Bst2UI CCWGG 2 cut(s) 107, 181
Bst6I CTCTTC 2 cut(s) 239, 365
BstACI GRCGYC 2 cut(s) 86, 101
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 3 cut(s) 46, 289, 308
BstF5I GGATG 2 cut(s) 264, 366
BstHHI GCGC 1 cut(s) 242
BstMAI GTCTC 2 cut(s) 117, 298
BstMWI GCNNNNNNNGC 1 cut(s) 246
BstNI CCWGG 2 cut(s) 107, 181
BstNSI RCATGY 1 cut(s) 409
BstSCI CCNGG 3 cut(s) 96, 105, 179
BstV1I GCAGC 2 cut(s) 17, 131
BsuRI GGCC 3 cut(s) 193, 281, 354
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 2 cut(s) 264, 366
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 10
CfoI GCGC 1 cut(s) 242
Cfr10I RCCGGY 2 cut(s) 186, 350
Cfr13I GGNCC 2 cut(s) 192, 280
CseI GACGC 2 cut(s) 90, 94
CspAI ACCGGT 1 cut(s) 186
CviAII CATG 2 cut(s) 373, 406
CviJI RGCY 7 cut(s) 8, 12, 95, 144, 193, 281, 354
CviKI_1 RGCY 7 cut(s) 8, 12, 95, 144, 193, 281, 354
DdeI CTNAG 3 cut(s) 46, 289, 308
Eam1104I CTCTTC 2 cut(s) 239, 365
EarI CTCTTC 2 cut(s) 239, 365
EciI GGCGGA 1 cut(s) 194
EcoRII CCWGG 2 cut(s) 105, 179
FaeI CATG 2 cut(s) 376, 409
FaiI YATR 3 cut(s) 161, 374, 407
FaqI GGGAC 1 cut(s) 88
FatI CATG 2 cut(s) 372, 405
FblI GTMKAC 1 cut(s) 83
Fnu4HI GCNGC 2 cut(s) 6, 145
FokI GGATG 2 cut(s) 251, 353
Fsp4HI GCNGC 2 cut(s) 6, 145
FspBI CTAG 1 cut(s) 9
GlaI GCGC 1 cut(s) 241
GluI GCNGC 2 cut(s) 6, 145
GsaI CCCAGC 1 cut(s) 143
HaeIII GGCC 3 cut(s) 193, 281, 354
HapII CCGG 3 cut(s) 98, 187, 351
HgaI GACGC 2 cut(s) 90, 94
HhaI GCGC 1 cut(s) 242
Hin1I GRCGYC 2 cut(s) 86, 101
Hin1II CATG 2 cut(s) 376, 409
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HincII GTYRAC 1 cut(s) 84
HindII GTYRAC 1 cut(s) 84
HinfI GANTC 2 cut(s) 20, 67
HpaII CCGG 3 cut(s) 98, 187, 351
HphI GGTGA 2 cut(s) 277, 319
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 2 cut(s) 66, 257
Hpy188III TCNNGA 1 cut(s) 211
Hpy8I GTNNAC 1 cut(s) 84
Hpy99I CGWCG 3 cut(s) 82, 85, 88
HpyCH4IV ACGT 2 cut(s) 77, 201
HpyCH4V TGCA 2 cut(s) 147, 225
HpyF10VI GCNNNNNNNGC 1 cut(s) 246
HpyF3I CTNAG 3 cut(s) 46, 289, 308
HpySE526I ACGT 2 cut(s) 77, 201
Hsp92I GRCGYC 2 cut(s) 86, 101
Hsp92II CATG 2 cut(s) 376, 409
HspAI GCGC 1 cut(s) 240
LpnPI CCDG 9 cut(s) 33, 92, 111, 119, 125, 166, 193, 200, 364
Lsp1109I GCAGC 2 cut(s) 17, 131
LweI GCATC 1 cut(s) 375
MaeI CTAG 1 cut(s) 9
MaeII ACGT 2 cut(s) 77, 201
MboII GAAGA 4 cut(s) 176, 226, 316, 352
MhlI GDGCHC 1 cut(s) 397
MluCI AATT 1 cut(s) 130
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 2 cut(s) 78, 98
MslI CAYNNNNRTG 1 cut(s) 371
MspI CCGG 3 cut(s) 98, 187, 351
MspR9I CCNGG 3 cut(s) 98, 107, 181
MvaI CCWGG 2 cut(s) 107, 181
MwoI GCNNNNNNNGC 1 cut(s) 246
NciI CCSGG 1 cut(s) 98
NheI GCTAGC 1 cut(s) 8
NlaIII CATG 2 cut(s) 376, 409
NlaIV GGNNCC 4 cut(s) 52, 185, 194, 259
NspI RCATGY 1 cut(s) 409
PciI ACATGT 1 cut(s) 405
PcsI WCGNNNNNNNCGW 1 cut(s) 86
PfeI GAWTC 1 cut(s) 67
PflFI GACNNNGTC 1 cut(s) 88
PfoI TCCNGGA 1 cut(s) 179
PinAI ACCGGT 1 cut(s) 186
PkrI GCNGC 2 cut(s) 7, 146
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
PscI ACATGT 1 cut(s) 405
Psp6I CCWGG 2 cut(s) 105, 179
PspFI CCCAGC 1 cut(s) 139
PspGI CCWGG 2 cut(s) 105, 179
PspN4I GGNNCC 4 cut(s) 52, 185, 194, 259
PspPI GGNCC 2 cut(s) 192, 280
PsyI GACNNNGTC 1 cut(s) 88
RseI CAYNNNNRTG 1 cut(s) 371
SalI GTCGAC 1 cut(s) 82
SatI GCNGC 2 cut(s) 6, 145
Sau96I GGNCC 2 cut(s) 192, 280
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 3 cut(s) 98, 107, 181
SduI GDGCHC 1 cut(s) 397
SfaNI GCATC 1 cut(s) 375
SgrDI CGTCGACG 1 cut(s) 82
SmiMI CAYNNNNRTG 1 cut(s) 371
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 1 cut(s) 130
SsiI CCGC 1 cut(s) 205
SspMI CTAG 1 cut(s) 9
StyD4I CCNGG 3 cut(s) 96, 105, 179
TaiI ACGT 2 cut(s) 80, 204
TaqI TCGA 3 cut(s) 18, 83, 303
TasI AATT 1 cut(s) 130
TfiI GAWTC 1 cut(s) 67
TscAI CASTG 1 cut(s) 37
TseI GCWGC 2 cut(s) 5, 144
TspDTI ATGAA 1 cut(s) 111
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 1 cut(s) 37
Tth111I GACNNNGTC 1 cut(s) 88
XapI RAATTY 1 cut(s) 130
XceI RCATGY 1 cut(s) 409
XmiI GTMKAC 1 cut(s) 83
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.