Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0019926

Physical Location & Seq

Genomic Coordinates Forward (+)

7500740 .. 7501499

Gene Structure 760 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG045900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCAGCTAGCCCACTCGACTCAACCCTCACTGCCTCAACCATCTCGGGTTCCAACCCTCCTCCGATTACTCTGGCGTCGTCGACGCCGTCAGCCCCGCCGTCTCCAACTTCTCATCAGCTGCCCAACTCCACCATAGAAGAAACTTCACTCTCCTGGAACCGGTGGCGCCACCACGTCCGCCTCAAGACCACCCTCTGCACCGAACTCTCCAGCGCAGTCGGCGACCTCGGAACCTACATCCCCATCGTCCTGGCCCTCACCTTAGTCTCCCACCTCGACCTCAGCACCACCCTCATCTTCACCTCCCTCTATAACTTCGCCACCGGCCTCATCTTCGGCATCCCCATGCCCCTCCAAAATCCAAGTGCTCAAAATCACATGGGAGGATTGGAAAATCGGGTTTCTCTGGGAAGCAATTCCGCAAATCCCCTTATTAATTTTGAACTCTGTGATTGCGGTTTGGATGGGGCAAATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0007034 GO:0008150 GO:0008509 GO:0009705 GO:0015075 GO:0015098 GO:0015103 GO:0015318 GO:0015689 GO:0015698 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0034486 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0090414 GO:0098588 GO:0098656 GO:0098660 GO:0098661 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_MOT1

Protein Analysis

160

Amino Acids

16.89

Weight (kDa)

5.11

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_MOT1	PF16983	69 - 130	3.1e-11	Molybdate transporter of MFS superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0019926)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0401431
rosa_laevigata	RLG00000014173
rosa_multiflora	Rmu_sc0008241.1_g000005 Rmu_sc0028968.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166610
rosa_samantha	Rh3DG232100 Rh4DG045900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	168
AccI	GTMKAC	1 cut(s)	83
AciI	CCGC	4 cut(s)	98, 181, 423, 459
AcyI	GRCGYC	3 cut(s)	77, 86, 169
AfiI	CCNNNNNNNGG	1 cut(s)	162
AgeI	ACCGGT	1 cut(s)	162
AgsI	TTSAA	1 cut(s)	446
AjiI	CACGTC	1 cut(s)	178
AjnI	CCWGG	2 cut(s)	155, 252
AluBI	AGCT	2 cut(s)	8, 121
AluI	AGCT	2 cut(s)	8, 121
Alw21I	GWGCWC	1 cut(s)	373
Alw26I	GTCTC	2 cut(s)	108, 274
Ama87I	CYCGRG	1 cut(s)	46
AoxI	GGCC	2 cut(s)	255, 328
ApeKI	GCWGC	2 cut(s)	5, 121
AseI	ATTAAT	1 cut(s)	438
AsiGI	ACCGGT	1 cut(s)	162
Asp700I	GAANNNNTTC	1 cut(s)	418
AspLEI	GCGC	2 cut(s)	171, 218
AspS9I	GGNCC	1 cut(s)	256
AsuHPI	GGTGA	2 cut(s)	253, 295
AsuNHI	GCTAGC	1 cut(s)	8
AvaI	CYCGRG	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	373
BbvCI	CCTCAGC	1 cut(s)	284
BbvI	GCAGC	2 cut(s)	17, 108
BccI	CCATC	3 cut(s)	50, 254, 461
BceAI	ACGGC	2 cut(s)	73, 85
BciT130I	CCWGG	2 cut(s)	157, 254
BcoDI	GTCTC	2 cut(s)	108, 274
BfaI	CTAG	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	172
BisI	GCNGC	2 cut(s)	6, 122
BlsI	GCNGC	2 cut(s)	7, 123
Bme1390I	CCNGG	2 cut(s)	157, 254
BmeT110I	CYCGRG	1 cut(s)	46
BmgBI	CACGTC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	4 cut(s)	52, 161, 170, 235
BmrFI	CCNGG	2 cut(s)	157, 254
BmsI	GCATC	1 cut(s)	351
BmtI	GCTAGC	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	196
Bpu10I	CCTNAGC	1 cut(s)	284
BpuEI	CTTGAG	1 cut(s)	170
BsaHI	GRCGYC	3 cut(s)	77, 86, 169
BsaJI	CCNNGG	1 cut(s)	229
BsaWI	WCCGGW	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
Bse118I	RCCGGY	2 cut(s)	162, 326
BseBI	CCWGG	2 cut(s)	157, 254
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	3 cut(s)	240, 342, 472
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseMII	CTCAG	1 cut(s)	298
BseRI	GAGGAG	1 cut(s)	51
BseXI	GCAGC	2 cut(s)	17, 108
BsgI	GTGCAG	1 cut(s)	184
BshFI	GGCC	2 cut(s)	257, 330
BshNI	GGYRCC	1 cut(s)	168
BshTI	ACCGGT	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	373
BsiHKCI	CYCGRG	1 cut(s)	46
BsiSI	CCGG	2 cut(s)	163, 327
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmAI	GTCTC	2 cut(s)	108, 274
BsmBI	CGTCTC	1 cut(s)	108
BsnI	GGCC	2 cut(s)	257, 330
BsoBI	CYCGRG	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	373
BspACI	CCGC	4 cut(s)	98, 181, 423, 459
BspANI	GGCC	2 cut(s)	257, 330
BspCNI	CTCAG	1 cut(s)	297
BspLI	GGNNCC	4 cut(s)	52, 161, 170, 235
BspOI	GCTAGC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	168
BsrFI	RCCGGY	2 cut(s)	162, 326
BssAI	RCCGGY	2 cut(s)	162, 326
BssECI	CCNNGG	1 cut(s)	229
BssNI	GRCGYC	3 cut(s)	77, 86, 169
Bst2UI	CCWGG	2 cut(s)	157, 254
BstACI	GRCGYC	3 cut(s)	77, 86, 169
BstC8I	GCNNGC	1 cut(s)	10
BstDEI	CTNAG	2 cut(s)	265, 284
BstF5I	GGATG	3 cut(s)	240, 342, 472
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	2 cut(s)	171, 218
BstMAI	GTCTC	2 cut(s)	108, 274
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstNI	CCWGG	2 cut(s)	157, 254
BstSCI	CCNGG	2 cut(s)	155, 252
BstV1I	GCAGC	2 cut(s)	17, 108
BstXI	CCANNNNNNTGG	1 cut(s)	253
BsuRI	GGCC	2 cut(s)	257, 330
BtrI	CACGTC	1 cut(s)	178
BtsCI	GGATG	3 cut(s)	240, 342, 472
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	10
CfoI	GCGC	2 cut(s)	171, 218
Cfr10I	RCCGGY	2 cut(s)	162, 326
Cfr13I	GGNCC	1 cut(s)	256
CseI	GACGC	2 cut(s)	66, 94
CspAI	ACCGGT	1 cut(s)	162
CviAII	CATG	2 cut(s)	349, 382
CviJI	RGCY	6 cut(s)	8, 12, 95, 121, 257, 330
CviKI_1	RGCY	6 cut(s)	8, 12, 95, 121, 257, 330
DdeI	CTNAG	2 cut(s)	265, 284
DinI	GGCGCC	1 cut(s)	170
EciI	GGCGGA	1 cut(s)	170
Eco88I	CYCGRG	1 cut(s)	46
EcoRII	CCWGG	2 cut(s)	155, 252
EgeI	GGCGCC	1 cut(s)	170
EheI	GGCGCC	1 cut(s)	170
Esp3I	CGTCTC	1 cut(s)	108
FaeI	CATG	2 cut(s)	352, 385
FaiI	YATR	4 cut(s)	137, 315, 350, 383
FatI	CATG	2 cut(s)	348, 381
FauI	CCCGC	1 cut(s)	105
FblI	GTMKAC	1 cut(s)	83
Fnu4HI	GCNGC	2 cut(s)	6, 122
FokI	GGATG	3 cut(s)	227, 329, 479
Fsp4HI	GCNGC	2 cut(s)	6, 122
FspBI	CTAG	1 cut(s)	9
GlaI	GCGC	2 cut(s)	170, 217
GluI	GCNGC	2 cut(s)	6, 122
GsuI	CTGGAG	1 cut(s)	196
HaeII	RGCGCY	1 cut(s)	172
HaeIII	GGCC	2 cut(s)	257, 330
HapII	CCGG	2 cut(s)	163, 327
HgaI	GACGC	2 cut(s)	66, 94
HhaI	GCGC	2 cut(s)	171, 218
Hin1I	GRCGYC	3 cut(s)	77, 86, 169
Hin1II	CATG	2 cut(s)	352, 385
Hin6I	GCGC	2 cut(s)	169, 216
HinP1I	GCGC	2 cut(s)	169, 216
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	2 cut(s)	163, 327
HphI	GGTGA	2 cut(s)	253, 295
Hpy166II	GTNNAC	1 cut(s)	84
Hpy188I	TCNGA	2 cut(s)	66, 233
Hpy188III	TCNNGA	1 cut(s)	187
Hpy8I	GTNNAC	1 cut(s)	84
Hpy99I	CGWCG	3 cut(s)	82, 85, 88
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	1 cut(s)	201
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpyF3I	CTNAG	2 cut(s)	265, 284
HpySE526I	ACGT	1 cut(s)	177
Hsp92I	GRCGYC	3 cut(s)	77, 86, 169
Hsp92II	CATG	2 cut(s)	352, 385
HspAI	GCGC	2 cut(s)	169, 216
KasI	GGCGCC	1 cut(s)	168
LpnPI	CCDG	9 cut(s)	59, 142, 169, 176, 226, 239, 266, 340, 395
Lsp1109I	GCAGC	2 cut(s)	17, 108
LweI	GCATC	1 cut(s)	351
MaeI	CTAG	1 cut(s)	9
MaeII	ACGT	1 cut(s)	177
MboII	GAAGA	3 cut(s)	152, 292, 328
MhlI	GDGCHC	1 cut(s)	373
MluCI	AATT	2 cut(s)	418, 439
Mly113I	GGCGCC	1 cut(s)	169
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	2 cut(s)	78, 131
MroXI	GAANNNNTTC	1 cut(s)	418
MseI	TTAA	1 cut(s)	438
MslI	CAYNNNNRTG	1 cut(s)	347
MspA1I	CMGCKG	1 cut(s)	121
MspI	CCGG	2 cut(s)	163, 327
MspR9I	CCNGG	2 cut(s)	157, 254
MvaI	CCWGG	2 cut(s)	157, 254
MwoI	GCNNNNNNNGC	1 cut(s)	222
NarI	GGCGCC	1 cut(s)	169
NheI	GCTAGC	1 cut(s)	8
NlaIII	CATG	2 cut(s)	352, 385
NlaIV	GGNNCC	4 cut(s)	52, 161, 170, 235
PcsI	WCGNNNNNNNCGW	1 cut(s)	86
PdmI	GAANNNNTTC	1 cut(s)	418
PflFI	GACNNNGTC	1 cut(s)	88
PfoI	TCCNGGA	1 cut(s)	155
PinAI	ACCGGT	1 cut(s)	162
PkrI	GCNGC	2 cut(s)	7, 123
PleI	GAGTC	1 cut(s)	14
PluTI	GGCGCC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	14
PshBI	ATTAAT	1 cut(s)	438
Psp6I	CCWGG	2 cut(s)	155, 252
PspGI	CCWGG	2 cut(s)	155, 252
PspN4I	GGNNCC	4 cut(s)	52, 161, 170, 235
PspPI	GGNCC	1 cut(s)	256
PsyI	GACNNNGTC	1 cut(s)	88
PvuII	CAGCTG	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	347
SalI	GTCGAC	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	2 cut(s)	6, 122
Sau96I	GGNCC	1 cut(s)	256
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	2 cut(s)	157, 254
SduI	GDGCHC	1 cut(s)	373
SetI	ASST	9 cut(s)	10, 123, 180, 231, 239, 266, 279, 285, 308
SfaNI	GCATC	1 cut(s)	351
SfoI	GGCGCC	1 cut(s)	170
SgrDI	CGTCGACG	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	347
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	2 cut(s)	418, 439
SsiI	CCGC	4 cut(s)	98, 181, 423, 459
SspDI	GGCGCC	1 cut(s)	168
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	2 cut(s)	155, 252
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	3 cut(s)	18, 83, 279
TasI	AATT	2 cut(s)	418, 439
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	1 cut(s)	37
TseI	GCWGC	2 cut(s)	5, 121
TspRI	CASTG	1 cut(s)	37
Tth111I	GACNNNGTC	1 cut(s)	88
VspI	ATTAAT	1 cut(s)	438
XmiI	GTMKAC	1 cut(s)	83
XmnI	GAANNNNTTC	1 cut(s)	418
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.