Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028968.1

Orthogroup ID

OG0019926

Physical Location & Seq

Genomic Coordinates Forward (+)

10463 .. 10783

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028968.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

atgggtgatcaatgtattggtcgacttaacttggaatacaattggaacagaaatttttcgctgggctgcaatatctccaccatagaagaaacttcactctcctggaaccggtggctccaccacgtccgcctcaagaccaccctctgcaccgaactctccggcgcagtcggcgacctcggaacctacatccccatcatcttggccctcaccttagtctcccacctcaacctcagcaccaccctcatcttcacctccctctacaacttcgccactggcatccccatgcccctccaaaatccaagtgctcaaaatcacatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0007034 GO:0008150 GO:0008509 GO:0009705 GO:0015075 GO:0015098 GO:0015103 GO:0015318 GO:0015689 GO:0015698 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0034486 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0090414 GO:0098588 GO:0098656 GO:0098660 GO:0098661 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_MOT1

Protein Analysis

106

Amino Acids

11.88

Weight (kDa)

6.38

Isoelectric Point (pI)

36.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019926)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0401431
rosa_laevigata	RLG00000014173
rosa_multiflora	Rmu_sc0008241.1_g000005 Rmu_sc0028968.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166610
rosa_samantha	Rh3DG232100 Rh4DG045900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	22
AciI	CCGC	1 cut(s)	127
AcsI	RAATTY	1 cut(s)	52
AfiI	CCNNNNNNNGG	1 cut(s)	108
AflIII	ACRYGT	1 cut(s)	315
AgeI	ACCGGT	1 cut(s)	108
AjiI	CACGTC	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	101
Alw21I	GWGCWC	1 cut(s)	307
Alw26I	GTCTC	1 cut(s)	220
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	66
ApoI	RAATTY	1 cut(s)	52
AsiGI	ACCGGT	1 cut(s)	108
Asp700I	GAANNNNTTC	1 cut(s)	55
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	202
AsuHPI	GGTGA	3 cut(s)	17, 199, 241
Bbv12I	GWGCWC	1 cut(s)	307
BbvCI	CCTCAGC	1 cut(s)	230
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	103
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	220
BisI	GCNGC	1 cut(s)	67
BlsI	GCNGC	1 cut(s)	68
Bme1390I	CCNGG	1 cut(s)	103
BmgBI	CACGTC	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	202
BmiI	GGNNCC	3 cut(s)	107, 116, 181
BmrFI	CCNGG	1 cut(s)	103
BmsI	GCATC	1 cut(s)	285
Bpu10I	CCTNAGC	1 cut(s)	230
BpuEI	CTTGAG	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	175
BsaWI	WCCGGW	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse118I	RCCGGY	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	2 cut(s)	186, 276
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	244
BseNI	ACTGG	1 cut(s)	277
BseXI	GCAGC	1 cut(s)	53
BseYI	CCCAGC	1 cut(s)	61
BsgI	GTGCAG	1 cut(s)	130
BshFI	GGCC	1 cut(s)	203
BshTI	ACCGGT	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	307
BsiSI	CCGG	2 cut(s)	109, 159
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	220
BsnI	GGCC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	1 cut(s)	7
BspACI	CCGC	1 cut(s)	127
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	243
BspLI	GGNNCC	3 cut(s)	107, 116, 181
BsrFI	RCCGGY	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	277
BssAI	RCCGGY	1 cut(s)	108
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	1 cut(s)	7
Bst2UI	CCWGG	1 cut(s)	103
BstDEI	CTNAG	2 cut(s)	211, 230
BstF5I	GGATG	2 cut(s)	186, 276
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	1 cut(s)	10
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstNI	CCWGG	1 cut(s)	103
BstNSI	RCATGY	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	53
BstXI	CCANNNNNNTGG	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	203
BtrI	CACGTC	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	186, 276
BtsIMutI	CAGTG	1 cut(s)	270
CfoI	GCGC	1 cut(s)	164
Cfr10I	RCCGGY	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	202
CspAI	ACCGGT	1 cut(s)	108
CviAII	CATG	2 cut(s)	283, 316
CviJI	RGCY	3 cut(s)	66, 115, 203
CviKI_1	RGCY	3 cut(s)	66, 115, 203
DdeI	CTNAG	2 cut(s)	211, 230
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
EciI	GGCGGA	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	101
FaeI	CATG	2 cut(s)	286, 319
FaiI	YATR	3 cut(s)	83, 284, 317
FatI	CATG	2 cut(s)	282, 315
FbaI	TGATCA	1 cut(s)	7
FblI	GTMKAC	1 cut(s)	22
Fnu4HI	GCNGC	1 cut(s)	67
FokI	GGATG	2 cut(s)	173, 263
Fsp4HI	GCNGC	1 cut(s)	67
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	1 cut(s)	67
GsaI	CCCAGC	1 cut(s)	65
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	2 cut(s)	109, 159
HhaI	GCGC	1 cut(s)	164
Hin1II	CATG	2 cut(s)	286, 319
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HincII	GTYRAC	1 cut(s)	23
HindII	GTYRAC	1 cut(s)	23
HpaII	CCGG	2 cut(s)	109, 159
HphI	GGTGA	3 cut(s)	17, 199, 241
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	1 cut(s)	179
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	1 cut(s)	23
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	2 cut(s)	69, 147
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
HpyF3I	CTNAG	2 cut(s)	211, 230
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	286, 319
HspAI	GCGC	1 cut(s)	162
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	7
LmnI	GCTCC	1 cut(s)	120
LpnPI	CCDG	6 cut(s)	47, 88, 115, 122, 172, 258
Lsp1109I	GCAGC	1 cut(s)	53
LweI	GCATC	1 cut(s)	285
MaeII	ACGT	1 cut(s)	123
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	2 cut(s)	98, 238
MfeI	CAATTG	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	2 cut(s)	40, 52
MroXI	GAANNNNTTC	1 cut(s)	55
MseI	TTAA	1 cut(s)	27
MslI	CAYNNNNRTG	1 cut(s)	281
MspI	CCGG	2 cut(s)	109, 159
MspR9I	CCNGG	1 cut(s)	103
MunI	CAATTG	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	1 cut(s)	168
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	2 cut(s)	286, 319
NlaIV	GGNNCC	3 cut(s)	107, 116, 181
NspI	RCATGY	1 cut(s)	319
PciI	ACATGT	1 cut(s)	315
PdmI	GAANNNNTTC	1 cut(s)	55
PfoI	TCCNGGA	1 cut(s)	101
PinAI	ACCGGT	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	68
PscI	ACATGT	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	101
PspFI	CCCAGC	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	3 cut(s)	107, 116, 181
PspPI	GGNCC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	281
SalI	GTCGAC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	1 cut(s)	67
Sau3AI	GATC	1 cut(s)	7
Sau96I	GGNCC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	103
SduI	GDGCHC	1 cut(s)	307
SetI	ASST	7 cut(s)	126, 177, 185, 212, 225, 231, 254
SfaNI	GCATC	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	2 cut(s)	40, 52
SsiI	CCGC	1 cut(s)	127
StyD4I	CCNGG	1 cut(s)	101
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	22
TasI	AATT	2 cut(s)	40, 52
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	1 cut(s)	277
TseI	GCWGC	1 cut(s)	66
TspRI	CASTG	1 cut(s)	277
XapI	RAATTY	1 cut(s)	52
XceI	RCATGY	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	22
XmnI	GAANNNNTTC	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.