Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0019926

Physical Location & Seq

Genomic Coordinates Forward (+)

22100937 .. 22101269

Gene Structure 333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG232100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGGTGATCAATGTATTGGTCGACTTAACTTGGAATACAATTGGAACATAAATTTTACCCTGGGCTGCAATATCTCCACCATAGAAGAAACTTCACTCTCCTGGAACCGGTGGCACCATCACGTCGGCCTCAAGACCACCCTCTGCACCGAACTCTTCGGCGCAGTTGGCGACCTCGGAACCTACATCCCCATCGTCTTGGCCCTCACCTTAGTCTCCCACCACGACCTCAGCACCACCCTCATCTTCACCTCCCTCTACAACTTCGCCACCGGCCTCCTCTTCGGCATCCCCATGCCCCTCCAAAATCCAAGTGCTCAAAATCACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0007034 GO:0008150 GO:0008509 GO:0009705 GO:0015075 GO:0015098 GO:0015103 GO:0015318 GO:0015689 GO:0015698 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0034486 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0090414 GO:0098588 GO:0098656 GO:0098660 GO:0098661 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_MOT1

Protein Analysis

110

Amino Acids

12.28

Weight (kDa)

5.74

Isoelectric Point (pI)

35.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_MOT1	PF16983	51 - 100	1.2e-10	Molybdate transporter of MFS superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0019926)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0401431
rosa_laevigata	RLG00000014173
rosa_multiflora	Rmu_sc0008241.1_g000005 Rmu_sc0028968.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166610
rosa_samantha	Rh3DG232100 Rh4DG045900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	22
AcsI	RAATTY	1 cut(s)	52
AfiI	CCNNNNNNNGG	1 cut(s)	108
AflIII	ACRYGT	1 cut(s)	327
AgeI	ACCGGT	1 cut(s)	108
AjiI	CACGTC	1 cut(s)	124
AjnI	CCWGG	2 cut(s)	60, 101
Alw21I	GWGCWC	1 cut(s)	319
Alw26I	GTCTC	1 cut(s)	220
AoxI	GGCC	3 cut(s)	127, 201, 274
ApeKI	GCWGC	1 cut(s)	66
ApoI	RAATTY	1 cut(s)	52
AsiGI	ACCGGT	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	202
AsuHPI	GGTGA	3 cut(s)	17, 199, 241
BanI	GGYRCC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	319
BbvCI	CCTCAGC	1 cut(s)	230
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	2 cut(s)	126, 200
BciT130I	CCWGG	2 cut(s)	62, 103
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	220
BisI	GCNGC	1 cut(s)	67
BlsI	GCNGC	1 cut(s)	68
Bme1390I	CCNGG	2 cut(s)	62, 103
BmgBI	CACGTC	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	202
BmiI	GGNNCC	3 cut(s)	107, 116, 181
BmrFI	CCNGG	2 cut(s)	62, 103
BmsI	GCATC	1 cut(s)	297
Bpu10I	CCTNAGC	1 cut(s)	230
BpuEI	CTTGAG	1 cut(s)	116
BsaJI	CCNNGG	3 cut(s)	60, 61, 175
BsaWI	WCCGGW	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse118I	RCCGGY	2 cut(s)	108, 272
BseBI	CCWGG	2 cut(s)	62, 103
BseDI	CCNNGG	3 cut(s)	60, 61, 175
BseGI	GGATG	2 cut(s)	186, 288
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	244
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	1 cut(s)	53
BsgI	GTGCAG	1 cut(s)	130
BshFI	GGCC	3 cut(s)	129, 203, 276
BshNI	GGYRCC	1 cut(s)	114
BshTI	ACCGGT	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	319
BsiSI	CCGG	2 cut(s)	109, 273
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	220
BsnI	GGCC	3 cut(s)	129, 203, 276
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp143I	GATC	1 cut(s)	7
BspANI	GGCC	3 cut(s)	129, 203, 276
BspCNI	CTCAG	1 cut(s)	243
BspLI	GGNNCC	3 cut(s)	107, 116, 181
BspT107I	GGYRCC	1 cut(s)	114
BsrFI	RCCGGY	2 cut(s)	108, 272
BssAI	RCCGGY	2 cut(s)	108, 272
BssECI	CCNNGG	3 cut(s)	60, 61, 175
BssMI	GATC	1 cut(s)	7
Bst2UI	CCWGG	2 cut(s)	62, 103
Bst6I	CTCTTC	2 cut(s)	161, 287
BstDEI	CTNAG	2 cut(s)	211, 230
BstF5I	GGATG	2 cut(s)	186, 288
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	1 cut(s)	10
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstNI	CCWGG	2 cut(s)	62, 103
BstNSI	RCATGY	1 cut(s)	331
BstSCI	CCNGG	2 cut(s)	60, 101
BstV1I	GCAGC	1 cut(s)	53
BstXI	CCANNNNNNTGG	1 cut(s)	199
BsuRI	GGCC	3 cut(s)	129, 203, 276
BtrI	CACGTC	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	186, 288
CfoI	GCGC	1 cut(s)	164
Cfr10I	RCCGGY	2 cut(s)	108, 272
Cfr13I	GGNCC	1 cut(s)	202
CspAI	ACCGGT	1 cut(s)	108
CviAII	CATG	2 cut(s)	295, 328
CviJI	RGCY	4 cut(s)	66, 129, 203, 276
CviKI_1	RGCY	4 cut(s)	66, 129, 203, 276
DdeI	CTNAG	2 cut(s)	211, 230
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
Eam1104I	CTCTTC	2 cut(s)	161, 287
EarI	CTCTTC	2 cut(s)	161, 287
EcoRII	CCWGG	2 cut(s)	60, 101
FaeI	CATG	2 cut(s)	298, 331
FaiI	YATR	4 cut(s)	50, 83, 296, 329
FatI	CATG	2 cut(s)	294, 327
FbaI	TGATCA	1 cut(s)	7
FblI	GTMKAC	1 cut(s)	22
Fnu4HI	GCNGC	1 cut(s)	67
FokI	GGATG	2 cut(s)	173, 275
Fsp4HI	GCNGC	1 cut(s)	67
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	1 cut(s)	67
HaeIII	GGCC	3 cut(s)	129, 203, 276
HapII	CCGG	2 cut(s)	109, 273
HhaI	GCGC	1 cut(s)	164
Hin1II	CATG	2 cut(s)	298, 331
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HincII	GTYRAC	1 cut(s)	23
HindII	GTYRAC	1 cut(s)	23
HpaII	CCGG	2 cut(s)	109, 273
HphI	GGTGA	3 cut(s)	17, 199, 241
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	1 cut(s)	179
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	1 cut(s)	23
Hpy99I	CGWCG	1 cut(s)	128
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	2 cut(s)	69, 147
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
HpyF3I	CTNAG	2 cut(s)	211, 230
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	298, 331
HspAI	GCGC	1 cut(s)	162
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	7
LpnPI	CCDG	6 cut(s)	47, 74, 88, 115, 122, 286
Lsp1109I	GCAGC	1 cut(s)	53
LweI	GCATC	1 cut(s)	297
MaeII	ACGT	1 cut(s)	123
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	4 cut(s)	98, 148, 238, 274
MfeI	CAATTG	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	319
MluCI	AATT	2 cut(s)	40, 52
MseI	TTAA	1 cut(s)	27
MslI	CAYNNNNRTG	1 cut(s)	293
MspI	CCGG	2 cut(s)	109, 273
MspR9I	CCNGG	2 cut(s)	62, 103
MunI	CAATTG	1 cut(s)	40
MvaI	CCWGG	2 cut(s)	62, 103
MwoI	GCNNNNNNNGC	1 cut(s)	168
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	2 cut(s)	298, 331
NlaIV	GGNNCC	3 cut(s)	107, 116, 181
NspI	RCATGY	1 cut(s)	331
PasI	CCCWGGG	1 cut(s)	61
PciI	ACATGT	1 cut(s)	327
PfoI	TCCNGGA	1 cut(s)	101
PinAI	ACCGGT	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	68
PscI	ACATGT	1 cut(s)	327
Psp6I	CCWGG	2 cut(s)	60, 101
PspGI	CCWGG	2 cut(s)	60, 101
PspN4I	GGNNCC	3 cut(s)	107, 116, 181
PspPI	GGNCC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	293
SalI	GTCGAC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	1 cut(s)	67
Sau3AI	GATC	1 cut(s)	7
Sau96I	GGNCC	1 cut(s)	202
ScrFI	CCNGG	2 cut(s)	62, 103
SduI	GDGCHC	1 cut(s)	319
SetI	ASST	6 cut(s)	126, 177, 185, 212, 231, 254
SfaNI	GCATC	1 cut(s)	297
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	2 cut(s)	40, 52
StyD4I	CCNGG	2 cut(s)	60, 101
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	22
TasI	AATT	2 cut(s)	40, 52
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TseI	GCWGC	1 cut(s)	66
XapI	RAATTY	1 cut(s)	52
XceI	RCATGY	1 cut(s)	331
XmiI	GTMKAC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.