Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0019926

Physical Location & Seq

Genomic Coordinates Forward (+)

8008111 .. 8008443

Gene Structure 333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00166610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGGTGATCAATGTATTGGTCGACTTAACTTGGAATACAATTGGAACAGAAATTTTACTGCGGGCTGCAATATCTCCACCATAGAAGAAATTTCACTCTCCTGGAACCGGTGGCGCCACCACATCCGCCTCAAGACCACCCTCGAACCGAACTCTCCGGCGCGGTCGGCGACCTCGGAGCCTACATCCCTATTGTCTTGGCCCCCCACCTTAGTCTCCCACCTCGACCTCGGCACCACCCTCATCTTCACCTCCCTCTACAACTTCGTCGCCGGCCTCCTCGTCGACATCCCCATGCCCCTCCAAAATCCAAGTGCTCAAAATCACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0007034 GO:0008150 GO:0008509 GO:0009705 GO:0015075 GO:0015098 GO:0015103 GO:0015318 GO:0015689 GO:0015698 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0034486 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0090414 GO:0098588 GO:0098656 GO:0098660 GO:0098661 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_MOT1

Protein Analysis

110

Amino Acids

12.43

Weight (kDa)

6.39

Isoelectric Point (pI)

53.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019926)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0401431
rosa_laevigata	RLG00000014173
rosa_multiflora	Rmu_sc0008241.1_g000005 Rmu_sc0028968.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166610
rosa_samantha	Rh3DG232100 Rh4DG045900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	114, 233
AccI	GTMKAC	2 cut(s)	22, 285
AccII	CGCG	1 cut(s)	163
AciI	CCGC	3 cut(s)	62, 127, 163
AcsI	RAATTY	2 cut(s)	52, 90
AcyI	GRCGYC	1 cut(s)	115
AfiI	CCNNNNNNNGG	1 cut(s)	108
AflIII	ACRYGT	1 cut(s)	327
AgeI	ACCGGT	1 cut(s)	108
AjnI	CCWGG	1 cut(s)	101
Alw21I	GWGCWC	1 cut(s)	319
Alw26I	GTCTC	1 cut(s)	220
AoxI	GGCC	2 cut(s)	200, 274
ApeKI	GCWGC	1 cut(s)	66
ApoI	RAATTY	2 cut(s)	52, 90
AsiGI	ACCGGT	1 cut(s)	108
AspLEI	GCGC	2 cut(s)	117, 163
AspS9I	GGNCC	1 cut(s)	201
AsuHPI	GGTGA	2 cut(s)	17, 241
BanI	GGYRCC	2 cut(s)	114, 233
Bbv12I	GWGCWC	1 cut(s)	319
BbvI	GCAGC	1 cut(s)	53
BciT130I	CCWGG	1 cut(s)	103
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	220
BfoI	RGCGCY	1 cut(s)	118
BisI	GCNGC	1 cut(s)	67
BlsI	GCNGC	1 cut(s)	68
Bme1390I	CCNGG	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	201
BmiI	GGNNCC	5 cut(s)	107, 116, 180, 203, 235
BmrFI	CCNGG	1 cut(s)	103
BpuEI	CTTGAG	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	115
BsaJI	CCNNGG	2 cut(s)	174, 229
BsaWI	WCCGGW	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse118I	RCCGGY	2 cut(s)	108, 272
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	2 cut(s)	174, 229
BseGI	GGATG	3 cut(s)	123, 185, 288
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	1 cut(s)	53
Bsh1236I	CGCG	1 cut(s)	163
Bsh1285I	CGRYCG	1 cut(s)	167
BshFI	GGCC	2 cut(s)	202, 276
BshNI	GGYRCC	2 cut(s)	114, 233
BshTI	ACCGGT	1 cut(s)	108
BsiEI	CGRYCG	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	319
BsiSI	CCGG	3 cut(s)	109, 158, 273
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	220
BsnI	GGCC	2 cut(s)	202, 276
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp143I	GATC	1 cut(s)	7
BspACI	CCGC	3 cut(s)	62, 127, 163
BspANI	GGCC	2 cut(s)	202, 276
BspFNI	CGCG	1 cut(s)	163
BspLI	GGNNCC	5 cut(s)	107, 116, 180, 203, 235
BspT107I	GGYRCC	2 cut(s)	114, 233
BsrFI	RCCGGY	2 cut(s)	108, 272
BssAI	RCCGGY	2 cut(s)	108, 272
BssECI	CCNNGG	2 cut(s)	174, 229
BssMI	GATC	1 cut(s)	7
BssNI	GRCGYC	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	103
BstACI	GRCGYC	1 cut(s)	115
BstC8I	GCNNGC	2 cut(s)	64, 274
BstDEI	CTNAG	1 cut(s)	211
BstF5I	GGATG	3 cut(s)	123, 185, 288
BstFNI	CGCG	1 cut(s)	163
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	2 cut(s)	117, 163
BstKTI	GATC	1 cut(s)	10
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	7
BstMCI	CGRYCG	1 cut(s)	167
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	1 cut(s)	103
BstNSI	RCATGY	1 cut(s)	331
BstSCI	CCNGG	1 cut(s)	101
BstUI	CGCG	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	53
BsuRI	GGCC	2 cut(s)	202, 276
BtsCI	GGATG	3 cut(s)	123, 185, 288
Cac8I	GCNNGC	2 cut(s)	64, 274
CfoI	GCGC	2 cut(s)	117, 163
Cfr10I	RCCGGY	2 cut(s)	108, 272
Cfr13I	GGNCC	1 cut(s)	201
CspAI	ACCGGT	1 cut(s)	108
CviAII	CATG	2 cut(s)	295, 328
CviJI	RGCY	4 cut(s)	66, 181, 202, 276
CviKI_1	RGCY	4 cut(s)	66, 181, 202, 276
DdeI	CTNAG	1 cut(s)	211
DinI	GGCGCC	1 cut(s)	116
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
EciI	GGCGGA	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	101
EgeI	GGCGCC	1 cut(s)	116
EheI	GGCGCC	1 cut(s)	116
FaeI	CATG	2 cut(s)	298, 331
FaiI	YATR	3 cut(s)	83, 296, 329
FatI	CATG	2 cut(s)	294, 327
FauI	CCCGC	1 cut(s)	55
FbaI	TGATCA	1 cut(s)	7
FblI	GTMKAC	2 cut(s)	22, 285
Fnu4HI	GCNGC	1 cut(s)	67
FokI	GGATG	3 cut(s)	110, 172, 275
Fsp4HI	GCNGC	1 cut(s)	67
GlaI	GCGC	2 cut(s)	116, 162
GluI	GCNGC	1 cut(s)	67
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	2 cut(s)	202, 276
HapII	CCGG	3 cut(s)	109, 158, 273
HhaI	GCGC	2 cut(s)	117, 163
Hin1I	GRCGYC	1 cut(s)	115
Hin1II	CATG	2 cut(s)	298, 331
Hin6I	GCGC	2 cut(s)	115, 161
HinP1I	GCGC	2 cut(s)	115, 161
HincII	GTYRAC	2 cut(s)	23, 286
HindII	GTYRAC	2 cut(s)	23, 286
HpaII	CCGG	3 cut(s)	109, 158, 273
HphI	GGTGA	2 cut(s)	17, 241
Hpy166II	GTNNAC	2 cut(s)	23, 286
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	2 cut(s)	23, 286
Hpy99I	CGWCG	2 cut(s)	272, 287
HpyCH4V	TGCA	1 cut(s)	69
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	1 cut(s)	211
Hsp92I	GRCGYC	1 cut(s)	115
Hsp92II	CATG	2 cut(s)	298, 331
HspAI	GCGC	2 cut(s)	115, 161
KasI	GGCGCC	1 cut(s)	114
KroI	GCCGGC	1 cut(s)	272
KroNI	GCCGGC	1 cut(s)	274
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	7
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	5 cut(s)	88, 115, 122, 171, 286
Lsp1109I	GCAGC	1 cut(s)	53
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	2 cut(s)	98, 238
MfeI	CAATTG	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	319
MluCI	AATT	3 cut(s)	40, 52, 90
Mly113I	GGCGCC	1 cut(s)	115
MroNI	GCCGGC	1 cut(s)	272
MseI	TTAA	1 cut(s)	27
MslI	CAYNNNNRTG	1 cut(s)	293
MspI	CCGG	3 cut(s)	109, 158, 273
MspR9I	CCNGG	1 cut(s)	103
MunI	CAATTG	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	103
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	1 cut(s)	167
NaeI	GCCGGC	1 cut(s)	274
NarI	GGCGCC	1 cut(s)	115
NdeII	GATC	1 cut(s)	7
NgoMIV	GCCGGC	1 cut(s)	272
NlaIII	CATG	2 cut(s)	298, 331
NlaIV	GGNNCC	5 cut(s)	107, 116, 180, 203, 235
NmeAIII	GCCGAG	1 cut(s)	210
NspI	RCATGY	1 cut(s)	331
PciI	ACATGT	1 cut(s)	327
PdiI	GCCGGC	1 cut(s)	274
PfoI	TCCNGGA	1 cut(s)	101
PinAI	ACCGGT	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	68
PluTI	GGCGCC	1 cut(s)	118
PscI	ACATGT	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	5 cut(s)	107, 116, 180, 203, 235
PspPI	GGNCC	1 cut(s)	201
RseI	CAYNNNNRTG	1 cut(s)	293
SalI	GTCGAC	2 cut(s)	21, 284
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	1 cut(s)	67
Sau3AI	GATC	1 cut(s)	7
Sau96I	GGNCC	1 cut(s)	201
ScrFI	CCNGG	1 cut(s)	103
SduI	GDGCHC	1 cut(s)	319
SetI	ASST	5 cut(s)	176, 212, 225, 231, 254
SfoI	GGCGCC	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	3 cut(s)	40, 52, 90
SsiI	CCGC	3 cut(s)	62, 127, 163
SspDI	GGCGCC	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	101
TaqI	TCGA	4 cut(s)	22, 144, 225, 285
TasI	AATT	3 cut(s)	40, 52, 90
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TseI	GCWGC	1 cut(s)	66
XapI	RAATTY	2 cut(s)	52, 90
XceI	RCATGY	1 cut(s)	331
XmiI	GTMKAC	2 cut(s)	22, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.