RchiOBHm_Chr4g0404851

Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0019927
Physical Location & Seq
Forward (+)
24733354 .. 24735953
2600 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37638

Sequence Viewer

Length: 336 bp
ATGAGCCTCAAAGTTGGCATCGTCGACCTCCCTAATGTCAGAAAGTCCACGCTTTTCAACTCCGTCGTTGAGAATGGGAAGGCTCAAGCTGCCAAATTTCTGTTTTGTACGATAGAACCAAACGTAGGGATTGTTGCAGTTCCGGATCCGCGCTTGAATGTACTTTCTGATCTCAGCAAGTCTCAGCGCATAGTCCCGACATCTTTGGAGCTTGTGGATATTGCTGGCCTTGTGAAGGGTGCTAGTCAAGGAGAGGATAATGCTAATTCTTTGAAAACTCAACTTGATCAACAAAAAGGTGTTGTTGATAATCTTGTCTCTAATACAAAGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1 YchF-GTPase_C

Protein Analysis

111

Amino Acids

11.8

Weight (kDa)

7.84

Isoelectric Point (pI)

14.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 4 - 93 7.1e-11 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019927)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0404851 RchiOBHm_Chr7g0235431
rosa_laevigata RLG00000034227
rosa_samantha Rh3CG159900 Rh3DG160500 Rh4CG448600 Rh7AG445500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 24
AccII CGCG 1 cut(s) 151
AccIII TCCGGA 1 cut(s) 142
AciI CCGC 1 cut(s) 149
AclWI GGATC 2 cut(s) 140, 153
AcsI RAATTY 1 cut(s) 95
AfaI GTAC 2 cut(s) 109, 162
AfiI CCNNNNNNNGG 2 cut(s) 125, 235
AgsI TTSAA 3 cut(s) 58, 157, 274
AluBI AGCT 2 cut(s) 89, 211
AluI AGCT 2 cut(s) 89, 211
Alw26I GTCTC 2 cut(s) 186, 322
AlwI GGATC 2 cut(s) 140, 153
Aor13HI TCCGGA 1 cut(s) 142
AoxI GGCC 1 cut(s) 226
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 1 cut(s) 95
AspLEI GCGC 2 cut(s) 153, 189
BamHI GGATCC 1 cut(s) 145
BbvI GCAGC 1 cut(s) 76
BclI TGATCA 1 cut(s) 286
BcoDI GTCTC 2 cut(s) 186, 322
BfaI CTAG 1 cut(s) 243
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 147
BmsI GCATC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 69
BsaWI WCCGGW 1 cut(s) 142
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 235
BseAI TCCGGA 1 cut(s) 142
BseLI CCNNNNNNNGG 2 cut(s) 125, 235
BseMII CTCAG 2 cut(s) 187, 197
BseXI GCAGC 1 cut(s) 76
Bsh1236I CGCG 1 cut(s) 151
BshFI GGCC 1 cut(s) 228
BsiSI CCGG 1 cut(s) 143
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 2 cut(s) 125, 235
BsmAI GTCTC 2 cut(s) 186, 322
BsmFI GGGAC 1 cut(s) 179
BsnI GGCC 1 cut(s) 228
Bsp13I TCCGGA 1 cut(s) 142
Bsp143I GATC 3 cut(s) 145, 169, 286
BspACI CCGC 1 cut(s) 149
BspANI GGCC 1 cut(s) 228
BspCNI CTCAG 2 cut(s) 186, 196
BspEI TCCGGA 1 cut(s) 142
BspFNI CGCG 1 cut(s) 151
BspLI GGNNCC 1 cut(s) 147
BspPI GGATC 2 cut(s) 140, 153
BssMI GATC 3 cut(s) 145, 169, 286
BstC8I GCNNGC 1 cut(s) 226
BstDEI CTNAG 3 cut(s) 173, 183, 333
BstENI CCTNNNNNAGG 1 cut(s) 233
BstFNI CGCG 1 cut(s) 151
BstHHI GCGC 2 cut(s) 153, 189
BstKTI GATC 3 cut(s) 148, 172, 289
BstMAI GTCTC 2 cut(s) 186, 322
BstMBI GATC 3 cut(s) 145, 169, 286
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstUI CGCG 1 cut(s) 151
BstV1I GCAGC 1 cut(s) 76
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BsuRI GGCC 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 226
CfoI GCGC 2 cut(s) 153, 189
Csp6I GTAC 2 cut(s) 108, 161
CviJI RGCY 5 cut(s) 6, 83, 89, 211, 228
CviKI_1 RGCY 5 cut(s) 6, 83, 89, 211, 228
CviQI GTAC 2 cut(s) 108, 161
DdeI CTNAG 3 cut(s) 173, 183, 333
DpnI GATC 3 cut(s) 147, 171, 288
DpnII GATC 3 cut(s) 145, 169, 286
EcoNI CCTNNNNNAGG 1 cut(s) 233
FaiI YATR 1 cut(s) 191
FaqI GGGAC 1 cut(s) 179
FbaI TGATCA 1 cut(s) 286
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 1 cut(s) 243
GlaI GCGC 2 cut(s) 152, 188
GluI GCNGC 1 cut(s) 90
HaeIII GGCC 1 cut(s) 228
HapII CCGG 1 cut(s) 143
HhaI GCGC 2 cut(s) 153, 189
Hin6I GCGC 2 cut(s) 151, 187
HinP1I GCGC 2 cut(s) 151, 187
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HpaII CCGG 1 cut(s) 143
Hpy166II GTNNAC 2 cut(s) 25, 48
Hpy188I TCNGA 2 cut(s) 41, 169
Hpy188III TCNNGA 2 cut(s) 143, 196
Hpy8I GTNNAC 2 cut(s) 25, 48
Hpy99I CGWCG 2 cut(s) 26, 68
HpyAV CCTTC 2 cut(s) 73, 229
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 1 cut(s) 137
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 3 cut(s) 173, 183, 333
HpySE526I ACGT 1 cut(s) 123
HspAI GCGC 2 cut(s) 151, 187
Kpn2I TCCGGA 1 cut(s) 142
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 3 cut(s) 145, 169, 286
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 2 cut(s) 156, 210
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 1 cut(s) 27
MaeI CTAG 1 cut(s) 243
MaeII ACGT 1 cut(s) 123
MalI GATC 3 cut(s) 147, 171, 288
MboI GATC 3 cut(s) 145, 169, 286
MflI RGATCY 1 cut(s) 145
MluCI AATT 2 cut(s) 95, 265
MnlI CCTC 3 cut(s) 17, 38, 247
MroI TCCGGA 1 cut(s) 142
MspI CCGG 1 cut(s) 143
MvnI CGCG 1 cut(s) 151
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 3 cut(s) 145, 169, 286
NlaIV GGNNCC 1 cut(s) 147
PkrI GCNGC 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 147
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 2 cut(s) 109, 162
RsaNI GTAC 2 cut(s) 108, 161
SalI GTCGAC 1 cut(s) 23
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 3 cut(s) 145, 169, 286
SetI ASST 5 cut(s) 30, 91, 126, 213, 301
SfaNI GCATC 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 2 cut(s) 95, 265
SsiI CCGC 1 cut(s) 149
SspMI CTAG 1 cut(s) 243
TaiI ACGT 1 cut(s) 126
TaqI TCGA 1 cut(s) 24
TasI AATT 2 cut(s) 95, 265
TatI WGTACW 1 cut(s) 160
TseI GCWGC 1 cut(s) 89
TspGWI ACGGA 1 cut(s) 52
XagI CCTNNNNNAGG 1 cut(s) 233
XapI RAATTY 1 cut(s) 95
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.