Rh3CG159900

Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0019927
Physical Location & Seq
Forward (+)
13452367 .. 13458216
5850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG159900.1

Sequence Viewer

Length: 669 bp
ATGGCTCCGACACCTTCTTCCACCAAATCCAATCAAAACCCTAGCCAAAACCCCATAATCCCCCCATCGTCTGTAGTTCTTAAAAGCCCACCCATCTCCAAACCCCAACTTAACCCTAAAAGAGTCTTTGTCGGAGCACTCGGTGGAAGTCTTCGCTCGAATTTGGGTCTGGGTGTTGAGAATGGGAAGGCTCAAGCTGCCAATTTTCCGTTTTGTACGATAGAACCAAACGTAGAGATTGTTGCAGTTCCAGATCCGCGCTTGAATGTACTTTCTAATCTCAGCAAGTCTCAGCGCGTAGTCCCGGCATCTTTGGAGCTTGTGGATATTGCTGGCCTTGTGAAGGGTGCTAGTCAAGGAGAGGATAATGCTAATTCTTTGAAAACTCAACTTGATCAACAAAAAGGTGTTGTTGATAATCTTGTCTCTAATACAAAGATCATTGAATTCTTTGGTGACCAGCTCTATTTATTATTAAAGACTACTAATAAAGTGAGTGAGATGGTGGGGAATGTTAATACTAGTGCCCTTTCCGCTTTTGAAAAGTTGGAAGAGAAAGTCTTAGCACTGGAATCCCAAGCAGAAGTTCTTGGTCAGTTAACTACAAATGATCTAGAAGGAAAGAAGCAAGTCAAAGACGAAAGATCAATAAAGGTTCTAGCTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1 YchF-GTPase_C

Protein Analysis

222

Amino Acids

23.67

Weight (kDa)

7.75

Isoelectric Point (pI)

33.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019927)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0404851 RchiOBHm_Chr7g0235431
rosa_laevigata RLG00000034227
rosa_samantha Rh3CG159900 Rh3DG160500 Rh4CG448600 Rh7AG445500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 259, 297
AciI CCGC 2 cut(s) 257, 534
AclWI GGATC 1 cut(s) 248
AcsI RAATTY 2 cut(s) 160, 446
AdeI CACNNNGTG 1 cut(s) 143
AfaI GTAC 2 cut(s) 217, 270
AfiI CCNNNNNNNGG 1 cut(s) 343
AgsI TTSAA 4 cut(s) 265, 382, 446, 542
AhlI ACTAGT 1 cut(s) 521
AjuI GAANNNNNNNTTGG 2 cut(s) 570, 602
AluBI AGCT 4 cut(s) 197, 319, 463, 662
AluI AGCT 4 cut(s) 197, 319, 463, 662
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 2 cut(s) 294, 430
AlwI GGATC 1 cut(s) 248
AoxI GGCC 1 cut(s) 334
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 2 cut(s) 160, 446
AspLEI GCGC 2 cut(s) 261, 297
AsuC2I CCSGG 1 cut(s) 305
AsuHPI GGTGA 1 cut(s) 467
BaeGI GKGCMC 1 cut(s) 529
BbsI GAAGAC 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 1 cut(s) 184
BccI CCATC 3 cut(s) 73, 101, 496
BclI TGATCA 1 cut(s) 394
BcnI CCSGG 1 cut(s) 305
BcoDI GTCTC 2 cut(s) 294, 430
BcuI ACTAGT 1 cut(s) 521
BfaI CTAG 5 cut(s) 42, 351, 522, 614, 659
BfmI CTRYAG 1 cut(s) 72
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
Bme1390I CCNGG 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 305
BmsI GCATC 1 cut(s) 317
BpiI GAAGAC 1 cut(s) 143
BpuEI CTTGAG 1 cut(s) 177
BpuMI CCSGG 1 cut(s) 305
Bsc4I CCNNNNNNNGG 1 cut(s) 343
Bse1I ACTGG 1 cut(s) 573
BseLI CCNNNNNNNGG 1 cut(s) 343
BseMII CTCAG 2 cut(s) 295, 305
BseNI ACTGG 1 cut(s) 573
BseSI GKGCMC 1 cut(s) 529
BseXI GCAGC 1 cut(s) 184
Bsh1236I CGCG 2 cut(s) 259, 297
BshFI GGCC 1 cut(s) 336
BsiHKAI GWGCWC 1 cut(s) 139
BsiSI CCGG 1 cut(s) 305
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 1 cut(s) 343
BsmAI GTCTC 2 cut(s) 294, 430
BsmFI GGGAC 1 cut(s) 287
BsnI GGCC 1 cut(s) 336
Bsp1286I GDGCHC 2 cut(s) 139, 529
Bsp143I GATC 5 cut(s) 253, 394, 438, 610, 644
BspACI CCGC 2 cut(s) 257, 534
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 2 cut(s) 294, 304
BspFNI CGCG 2 cut(s) 259, 297
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 248
BsrI ACTGG 1 cut(s) 573
BssMI GATC 5 cut(s) 253, 394, 438, 610, 644
Bst6I CTCTTC 1 cut(s) 546
BstC8I GCNNGC 1 cut(s) 334
BstDEI CTNAG 3 cut(s) 281, 291, 562
BstEII GGTNACC 1 cut(s) 455
BstENI CCTNNNNNAGG 1 cut(s) 341
BstFNI CGCG 2 cut(s) 259, 297
BstHHI GCGC 2 cut(s) 261, 297
BstKTI GATC 5 cut(s) 256, 397, 441, 613, 647
BstMAI GTCTC 2 cut(s) 294, 430
BstMBI GATC 5 cut(s) 253, 394, 438, 610, 644
BstMWI GCNNNNNNNGC 2 cut(s) 197, 533
BstPI GGTNACC 1 cut(s) 455
BstSCI CCNGG 1 cut(s) 303
BstSFI CTRYAG 1 cut(s) 72
BstSLI GKGCMC 1 cut(s) 529
BstUI CGCG 2 cut(s) 259, 297
BstV1I GCAGC 1 cut(s) 184
BstV2I GAAGAC 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BsuRI GGCC 1 cut(s) 336
BtsIMutI CAGTG 1 cut(s) 566
Cac8I GCNNGC 1 cut(s) 334
CfoI GCGC 2 cut(s) 261, 297
Csp6I GTAC 2 cut(s) 216, 269
CviJI RGCY 9 cut(s) 5, 45, 87, 191, 197, 319, 336, 463, 662
CviKI_1 RGCY 9 cut(s) 5, 45, 87, 191, 197, 319, 336, 463, 662
CviQI GTAC 2 cut(s) 216, 269
DdeI CTNAG 3 cut(s) 281, 291, 562
DpnI GATC 5 cut(s) 255, 396, 440, 612, 646
DpnII GATC 5 cut(s) 253, 394, 438, 610, 644
DraIII CACNNNGTG 1 cut(s) 143
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
Eco91I GGTNACC 1 cut(s) 455
EcoNI CCTNNNNNAGG 1 cut(s) 341
EcoO65I GGTNACC 1 cut(s) 455
EcoRI GAATTC 1 cut(s) 446
FaiI YATR 2 cut(s) 56, 667
FaqI GGGAC 1 cut(s) 287
FbaI TGATCA 1 cut(s) 394
Fnu4HI GCNGC 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 5 cut(s) 42, 351, 522, 614, 659
GlaI GCGC 2 cut(s) 260, 296
GluI GCNGC 1 cut(s) 198
HaeIII GGCC 1 cut(s) 336
HapII CCGG 1 cut(s) 305
HhaI GCGC 2 cut(s) 261, 297
Hin6I GCGC 2 cut(s) 259, 295
HinP1I GCGC 2 cut(s) 259, 295
HincII GTYRAC 1 cut(s) 600
HindII GTYRAC 1 cut(s) 600
HinfI GANTC 2 cut(s) 123, 572
HpaI GTTAAC 1 cut(s) 600
HpaII CCGG 1 cut(s) 305
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 1 cut(s) 600
Hpy188I TCNGA 2 cut(s) 9, 134
Hpy188III TCNNGA 2 cut(s) 251, 614
Hpy8I GTNNAC 1 cut(s) 600
HpyAV CCTTC 4 cut(s) 24, 181, 337, 611
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 533
HpyF3I CTNAG 3 cut(s) 281, 291, 562
HpySE526I ACGT 1 cut(s) 231
HspAI GCGC 2 cut(s) 259, 295
Ksp22I TGATCA 1 cut(s) 394
KspAI GTTAAC 1 cut(s) 600
Kzo9I GATC 5 cut(s) 253, 394, 438, 610, 644
LmnI GCTCC 3 cut(s) 10, 134, 316
LpnPI CCDG 6 cut(s) 155, 264, 318, 318, 473, 554
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 1 cut(s) 317
MaeI CTAG 5 cut(s) 42, 351, 522, 614, 659
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 1 cut(s) 455
MalI GATC 5 cut(s) 255, 396, 440, 612, 646
MboI GATC 5 cut(s) 253, 394, 438, 610, 644
MboII GAAGA 3 cut(s) 9, 143, 563
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 2 cut(s) 139, 529
MluCI AATT 4 cut(s) 160, 202, 373, 446
MlyI GAGTC 1 cut(s) 132
MmeI TCCRAC 3 cut(s) 32, 112, 528
MnlI CCTC 1 cut(s) 355
MseI TTAA 5 cut(s) 81, 111, 476, 516, 599
MspI CCGG 1 cut(s) 305
MspR9I CCNGG 1 cut(s) 305
MvnI CGCG 2 cut(s) 259, 297
MwoI GCNNNNNNNGC 2 cut(s) 197, 533
NciI CCSGG 1 cut(s) 305
NdeII GATC 5 cut(s) 253, 394, 438, 610, 644
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 455
PfeI GAWTC 1 cut(s) 572
PkrI GCNGC 1 cut(s) 199
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PspEI GGTNACC 1 cut(s) 455
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 2 cut(s) 217, 270
RsaNI GTAC 2 cut(s) 216, 269
SaqAI TTAA 5 cut(s) 81, 111, 476, 516, 599
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 5 cut(s) 253, 394, 438, 610, 644
SchI GAGTC 1 cut(s) 132
ScrFI CCNGG 1 cut(s) 305
SduI GDGCHC 2 cut(s) 139, 529
SetI ASST 8 cut(s) 16, 199, 234, 321, 409, 465, 657, 664
SfaNI GCATC 1 cut(s) 317
SfcI CTRYAG 1 cut(s) 72
SmlI CTYRAG 1 cut(s) 192
SmoI CTYRAG 1 cut(s) 192
SpeI ACTAGT 1 cut(s) 521
Sse9I AATT 4 cut(s) 160, 202, 373, 446
SsiI CCGC 2 cut(s) 257, 534
SspMI CTAG 5 cut(s) 42, 351, 522, 614, 659
StyD4I CCNGG 1 cut(s) 303
TaiI ACGT 1 cut(s) 234
TaqI TCGA 1 cut(s) 158
TasI AATT 4 cut(s) 160, 202, 373, 446
TatI WGTACW 1 cut(s) 268
TfiI GAWTC 1 cut(s) 572
Tru1I TTAA 5 cut(s) 81, 111, 476, 516, 599
Tru9I TTAA 5 cut(s) 81, 111, 476, 516, 599
TscAI CASTG 1 cut(s) 573
TseFI GTSAC 1 cut(s) 455
TseI GCWGC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 455
TspGWI ACGGA 1 cut(s) 198
TspRI CASTG 1 cut(s) 573
XagI CCTNNNNNAGG 1 cut(s) 341
XapI RAATTY 2 cut(s) 160, 446
XbaI TCTAGA 1 cut(s) 613
XspI CTAG 5 cut(s) 42, 351, 522, 614, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.