RchiOBHm_Chr7g0235431

Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0019927
Physical Location & Seq
Forward (+)
60166585 .. 60167460
876 bp
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UTR
Exon/CDS
Intron
PRQ21101

Sequence Viewer

Length: 411 bp
ATGAGCCTCAAAGCCGGCATCGTTGGCCTCCCTAATGTCGGAAAGTCCACGCTTTTCAACGCCGTCGTTGAGAATGGGAAGGCTCAAGCAGCCAATTTTTCGTTTTGTACGATAGAGCCAAACGTTGGGATTGTTGCAGTTCTGGATCTGCGCCTAAATGTACTTTCTGATCTCAGCAAGTCTCAGCGTGTAGTCCCAACATCTTTGGAGTTTGTGGATATTGCTGGCCTTGTGAAGGGTGCTAGTCAAGGAGAGGGGTTGGGGAATAAATTCTTGTCAAATATTCGCGAGGTGGACTCCATACTTCAGGTTTCTATCCTTTACTTATTGGTGCCATTTATTTGTAATTACCATCTTTTCCTTGTTCTGAAAATCTTTATTTTTTGGGTTGGTAATGGAGCCATTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1 YchF-GTPase_C

Protein Analysis

136

Amino Acids

14.62

Weight (kDa)

7.77

Isoelectric Point (pI)

23.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 5 - 104 9.5e-19 50S ribosome-binding GTPase
FeoB_N PF02421 6 - 53 1.9e-06 Ferrous iron transport protein B
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0019927)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0404851 RchiOBHm_Chr7g0235431
rosa_laevigata RLG00000034227
rosa_samantha Rh3CG159900 Rh3DG160500 Rh4CG448600 Rh7AG445500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 331
AccB7I CCANNNNNTGG 1 cut(s) 125
AccII CGCG 1 cut(s) 288
AclI AACGTT 1 cut(s) 123
AclWI GGATC 1 cut(s) 153
AcsI RAATTY 1 cut(s) 269
AcuI CTGAAG 1 cut(s) 290
AfaI GTAC 2 cut(s) 109, 162
AfiI CCNNNNNNNGG 3 cut(s) 38, 125, 235
AgsI TTSAA 1 cut(s) 58
Alw26I GTCTC 1 cut(s) 186
AlwI GGATC 1 cut(s) 153
AoxI GGCC 2 cut(s) 25, 226
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 1 cut(s) 269
Asp700I GAANNNNTTC 1 cut(s) 269
AspLEI GCGC 1 cut(s) 153
BanI GGYRCC 1 cut(s) 331
BbvI GCAGC 1 cut(s) 101
BccI CCATC 1 cut(s) 360
BceAI ACGGC 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 186
BfaI CTAG 1 cut(s) 243
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
BmiI GGNNCC 2 cut(s) 333, 400
BmsI GCATC 1 cut(s) 27
BplI GAGNNNNNCTC 2 cut(s) 281, 313
BpuEI CTTGAG 1 cut(s) 69
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 125, 235
Bse118I RCCGGY 1 cut(s) 14
BseLI CCNNNNNNNGG 3 cut(s) 38, 125, 235
BseMII CTCAG 2 cut(s) 187, 197
BseXI GCAGC 1 cut(s) 101
Bsh1236I CGCG 1 cut(s) 288
BshFI GGCC 2 cut(s) 27, 228
BshNI GGYRCC 1 cut(s) 331
BsiSI CCGG 1 cut(s) 15
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 3 cut(s) 38, 125, 235
BsmAI GTCTC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 179
BsnI GGCC 2 cut(s) 27, 228
Bsp143I GATC 2 cut(s) 145, 169
Bsp68I TCGCGA 1 cut(s) 288
BspANI GGCC 2 cut(s) 27, 228
BspCNI CTCAG 2 cut(s) 186, 196
BspFNI CGCG 1 cut(s) 288
BspLI GGNNCC 2 cut(s) 333, 400
BspPI GGATC 1 cut(s) 153
BspT107I GGYRCC 1 cut(s) 331
BsrFI RCCGGY 1 cut(s) 14
BssAI RCCGGY 1 cut(s) 14
BssMI GATC 2 cut(s) 145, 169
BstC8I GCNNGC 2 cut(s) 16, 226
BstDEI CTNAG 2 cut(s) 173, 183
BstENI CCTNNNNNAGG 1 cut(s) 233
BstFNI CGCG 1 cut(s) 288
BstHHI GCGC 1 cut(s) 153
BstKTI GATC 2 cut(s) 148, 172
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 2 cut(s) 145, 169
BstMWI GCNNNNNNNGC 2 cut(s) 24, 89
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 101
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BsuRI GGCC 2 cut(s) 27, 228
BtuMI TCGCGA 1 cut(s) 288
Cac8I GCNNGC 2 cut(s) 16, 226
CfoI GCGC 1 cut(s) 153
Cfr10I RCCGGY 1 cut(s) 14
Csp6I GTAC 2 cut(s) 108, 161
CviJI RGCY 8 cut(s) 6, 14, 27, 83, 92, 118, 228, 401
CviKI_1 RGCY 8 cut(s) 6, 14, 27, 83, 92, 118, 228, 401
CviQI GTAC 2 cut(s) 108, 161
DdeI CTNAG 2 cut(s) 173, 183
DpnI GATC 2 cut(s) 147, 171
DpnII GATC 2 cut(s) 145, 169
Eco57I CTGAAG 1 cut(s) 290
EcoNI CCTNNNNNAGG 1 cut(s) 233
FaiI YATR 3 cut(s) 302, 407, 409
FaqI GGGAC 1 cut(s) 179
Fnu4HI GCNGC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 1 cut(s) 243
GlaI GCGC 1 cut(s) 152
GluI GCNGC 1 cut(s) 90
HaeIII GGCC 2 cut(s) 27, 228
HapII CCGG 1 cut(s) 15
HhaI GCGC 1 cut(s) 153
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HinfI GANTC 1 cut(s) 296
HpaII CCGG 1 cut(s) 15
Hpy166II GTNNAC 2 cut(s) 48, 295
Hpy188I TCNGA 3 cut(s) 41, 169, 369
Hpy188III TCNNGA 2 cut(s) 143, 287
Hpy8I GTNNAC 2 cut(s) 48, 295
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 2 cut(s) 73, 229
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 1 cut(s) 137
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 89
HpyF3I CTNAG 2 cut(s) 173, 183
HpySE526I ACGT 1 cut(s) 123
HspAI GCGC 1 cut(s) 151
KroI GCCGGC 1 cut(s) 14
KroNI GCCGGC 1 cut(s) 16
Kzo9I GATC 2 cut(s) 145, 169
LmnI GCTCC 1 cut(s) 398
LpnPI CCDG 4 cut(s) 28, 128, 210, 293
Lsp1109I GCAGC 1 cut(s) 101
LweI GCATC 1 cut(s) 27
MaeI CTAG 1 cut(s) 243
MaeII ACGT 1 cut(s) 123
MalI GATC 2 cut(s) 147, 171
MboI GATC 2 cut(s) 145, 169
MflI RGATCY 1 cut(s) 145
MluCI AATT 3 cut(s) 94, 269, 346
MlyI GAGTC 1 cut(s) 290
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 4 cut(s) 17, 38, 247, 283
MroNI GCCGGC 1 cut(s) 14
MroXI GAANNNNTTC 1 cut(s) 269
MspI CCGG 1 cut(s) 15
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 2 cut(s) 24, 89
NaeI GCCGGC 1 cut(s) 16
NdeII GATC 2 cut(s) 145, 169
NgoMIV GCCGGC 1 cut(s) 14
NlaIV GGNNCC 2 cut(s) 333, 400
NruI TCGCGA 1 cut(s) 288
PcsI WCGNNNNNNNCGW 1 cut(s) 107
PdiI GCCGGC 1 cut(s) 16
PdmI GAANNNNTTC 1 cut(s) 269
PflMI CCANNNNNTGG 1 cut(s) 125
PkrI GCNGC 1 cut(s) 91
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
Psp1406I AACGTT 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 333, 400
PsuI RGATCY 1 cut(s) 145
RruI TCGCGA 1 cut(s) 288
RsaI GTAC 2 cut(s) 109, 162
RsaNI GTAC 2 cut(s) 108, 161
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 2 cut(s) 145, 169
SchI GAGTC 1 cut(s) 290
SetI ASST 3 cut(s) 126, 294, 312
SfaNI GCATC 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 3 cut(s) 94, 269, 346
SspI AATATT 1 cut(s) 283
SspMI CTAG 1 cut(s) 243
TaiI ACGT 1 cut(s) 126
TasI AATT 3 cut(s) 94, 269, 346
TatI WGTACW 1 cut(s) 160
TseI GCWGC 1 cut(s) 89
Van91I CCANNNNNTGG 1 cut(s) 125
XagI CCTNNNNNAGG 1 cut(s) 233
XapI RAATTY 1 cut(s) 269
XmnI GAANNNNTTC 1 cut(s) 269
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.