Rh3DG160500

Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0019927
Physical Location & Seq
Forward (+)
13904378 .. 13907510
3133 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG160500.1

Sequence Viewer

Length: 522 bp
ATGAGCCTCAAATCCGGCATCGTCGGCCTCCCTAATGTCGAAAAGTCCACGCTTTTCAACGCCGTTGAGAATGGGAAGGCTCAAGCTGCCAATTTTCCGTTTTGTACGATAGAACCAAACGTAGAGATTGTTGCAGTTCCAGATCCGCGCTTGAATGTACTTTCTAATCTCAGCAAGTCTCAGCGCGTAGTCCCGGCATCTTTGGAGCTTGTGGATATTGCTGGCCTTGTGAAGGGTGCTAGTCAAGGAGAGGATAATGCTAATTCTTTGAAAACTCAACTTGATCAACAAAAAGGTGTTGTTGATAATCTTGTCTCTAATACAAAGATCATTGAATTCTTTGGTGACCAGCTCTATTTATTATTAAAGACTACTAATAAAGTGAGTGAGATGGTGGGGAATGTTAATACTAGTGCCCTTTCCGCTTTTGAAAAGTTGGAAGAGAAAGTCTTAGCACTGGAATCCCAAGCAGAAGTTCTTGGTCAGTTAACTACAAATGATCTAGAAGGAAAGTTCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1 YchF-GTPase_C

Protein Analysis

173

Amino Acids

18.55

Weight (kDa)

4.74

Isoelectric Point (pI)

22.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 6 - 95 1e-12 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019927)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0404851 RchiOBHm_Chr7g0235431
rosa_laevigata RLG00000034227
rosa_samantha Rh3CG159900 Rh3DG160500 Rh4CG448600 Rh7AG445500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 148, 186
AciI CCGC 2 cut(s) 146, 423
AclWI GGATC 1 cut(s) 137
AcsI RAATTY 1 cut(s) 335
AfaI GTAC 2 cut(s) 106, 159
AfiI CCNNNNNNNGG 1 cut(s) 232
AgsI TTSAA 5 cut(s) 58, 154, 271, 335, 431
AhlI ACTAGT 1 cut(s) 410
AjuI GAANNNNNNNTTGG 2 cut(s) 459, 491
AluBI AGCT 3 cut(s) 86, 208, 352
AluI AGCT 3 cut(s) 86, 208, 352
Alw26I GTCTC 2 cut(s) 183, 319
AlwI GGATC 1 cut(s) 137
AoxI GGCC 2 cut(s) 25, 223
ApeKI GCWGC 1 cut(s) 86
ApoI RAATTY 1 cut(s) 335
AspLEI GCGC 2 cut(s) 150, 186
AsuC2I CCSGG 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 356
BaeGI GKGCMC 1 cut(s) 418
BbvI GCAGC 1 cut(s) 73
BccI CCATC 1 cut(s) 385
BceAI ACGGC 1 cut(s) 47
BclI TGATCA 1 cut(s) 283
BcnI CCSGG 1 cut(s) 194
BcoDI GTCTC 2 cut(s) 183, 319
BcuI ACTAGT 1 cut(s) 410
BfaI CTAG 3 cut(s) 240, 411, 503
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme1390I CCNGG 1 cut(s) 194
BmrFI CCNGG 1 cut(s) 194
BmsI GCATC 2 cut(s) 27, 206
BpuEI CTTGAG 1 cut(s) 66
BpuMI CCSGG 1 cut(s) 194
Bsc4I CCNNNNNNNGG 1 cut(s) 232
Bse1I ACTGG 1 cut(s) 462
BseLI CCNNNNNNNGG 1 cut(s) 232
BseMII CTCAG 2 cut(s) 184, 194
BseNI ACTGG 1 cut(s) 462
BseSI GKGCMC 1 cut(s) 418
BseXI GCAGC 1 cut(s) 73
Bsh1236I CGCG 2 cut(s) 148, 186
BshFI GGCC 2 cut(s) 27, 225
BsiSI CCGG 2 cut(s) 15, 194
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 232
BsmAI GTCTC 2 cut(s) 183, 319
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 2 cut(s) 27, 225
Bsp1286I GDGCHC 1 cut(s) 418
Bsp143I GATC 4 cut(s) 142, 283, 327, 499
BspACI CCGC 2 cut(s) 146, 423
BspANI GGCC 2 cut(s) 27, 225
BspCNI CTCAG 2 cut(s) 183, 193
BspFNI CGCG 2 cut(s) 148, 186
BspPI GGATC 1 cut(s) 137
BsrI ACTGG 1 cut(s) 462
BssMI GATC 4 cut(s) 142, 283, 327, 499
Bst6I CTCTTC 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 3 cut(s) 170, 180, 451
BstEII GGTNACC 1 cut(s) 344
BstENI CCTNNNNNAGG 1 cut(s) 230
BstFNI CGCG 2 cut(s) 148, 186
BstHHI GCGC 2 cut(s) 150, 186
BstKTI GATC 4 cut(s) 145, 286, 330, 502
BstMAI GTCTC 2 cut(s) 183, 319
BstMBI GATC 4 cut(s) 142, 283, 327, 499
BstMWI GCNNNNNNNGC 3 cut(s) 24, 86, 422
BstPI GGTNACC 1 cut(s) 344
BstSCI CCNGG 1 cut(s) 192
BstSLI GKGCMC 1 cut(s) 418
BstUI CGCG 2 cut(s) 148, 186
BstV1I GCAGC 1 cut(s) 73
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BsuRI GGCC 2 cut(s) 27, 225
BtsIMutI CAGTG 1 cut(s) 455
Cac8I GCNNGC 1 cut(s) 223
CfoI GCGC 2 cut(s) 150, 186
Csp6I GTAC 2 cut(s) 105, 158
CviJI RGCY 7 cut(s) 6, 27, 80, 86, 208, 225, 352
CviKI_1 RGCY 7 cut(s) 6, 27, 80, 86, 208, 225, 352
CviQI GTAC 2 cut(s) 105, 158
DdeI CTNAG 3 cut(s) 170, 180, 451
DpnI GATC 4 cut(s) 144, 285, 329, 501
DpnII GATC 4 cut(s) 142, 283, 327, 499
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
Eco91I GGTNACC 1 cut(s) 344
EcoNI CCTNNNNNAGG 1 cut(s) 230
EcoO65I GGTNACC 1 cut(s) 344
EcoRI GAATTC 1 cut(s) 335
FaiI YATR 1 cut(s) 520
FaqI GGGAC 1 cut(s) 176
FbaI TGATCA 1 cut(s) 283
Fnu4HI GCNGC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 3 cut(s) 240, 411, 503
GlaI GCGC 2 cut(s) 149, 185
GluI GCNGC 1 cut(s) 87
HaeIII GGCC 2 cut(s) 27, 225
HapII CCGG 2 cut(s) 15, 194
HhaI GCGC 2 cut(s) 150, 186
Hin6I GCGC 2 cut(s) 148, 184
HinP1I GCGC 2 cut(s) 148, 184
HincII GTYRAC 1 cut(s) 489
HindII GTYRAC 1 cut(s) 489
HinfI GANTC 1 cut(s) 461
HpaI GTTAAC 1 cut(s) 489
HpaII CCGG 2 cut(s) 15, 194
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 2 cut(s) 48, 489
Hpy188III TCNNGA 2 cut(s) 140, 503
Hpy8I GTNNAC 2 cut(s) 48, 489
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 3 cut(s) 70, 226, 500
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 1 cut(s) 134
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 86, 422
HpyF3I CTNAG 3 cut(s) 170, 180, 451
HpySE526I ACGT 1 cut(s) 120
HspAI GCGC 2 cut(s) 148, 184
Ksp22I TGATCA 1 cut(s) 283
KspAI GTTAAC 1 cut(s) 489
Kzo9I GATC 4 cut(s) 142, 283, 327, 499
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 6 cut(s) 28, 153, 207, 207, 362, 443
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 2 cut(s) 27, 206
MaeI CTAG 3 cut(s) 240, 411, 503
MaeII ACGT 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 344
MalI GATC 4 cut(s) 144, 285, 329, 501
MboI GATC 4 cut(s) 142, 283, 327, 499
MboII GAAGA 1 cut(s) 452
MflI RGATCY 1 cut(s) 142
MhlI GDGCHC 1 cut(s) 418
MluCI AATT 3 cut(s) 91, 262, 335
MmeI TCCRAC 1 cut(s) 417
MnlI CCTC 3 cut(s) 17, 38, 244
MseI TTAA 3 cut(s) 365, 405, 488
MspI CCGG 2 cut(s) 15, 194
MspR9I CCNGG 1 cut(s) 194
MvnI CGCG 2 cut(s) 148, 186
MwoI GCNNNNNNNGC 3 cut(s) 24, 86, 422
NciI CCSGG 1 cut(s) 194
NdeII GATC 4 cut(s) 142, 283, 327, 499
NmuCI GTSAC 1 cut(s) 344
PfeI GAWTC 1 cut(s) 461
PkrI GCNGC 1 cut(s) 88
PspEI GGTNACC 1 cut(s) 344
PsuI RGATCY 1 cut(s) 142
RsaI GTAC 2 cut(s) 106, 159
RsaNI GTAC 2 cut(s) 105, 158
SaqAI TTAA 3 cut(s) 365, 405, 488
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 4 cut(s) 142, 283, 327, 499
ScrFI CCNGG 1 cut(s) 194
SduI GDGCHC 1 cut(s) 418
SetI ASST 5 cut(s) 88, 123, 210, 298, 354
SfaNI GCATC 2 cut(s) 27, 206
SmlI CTYRAG 1 cut(s) 81
SmoI CTYRAG 1 cut(s) 81
SpeI ACTAGT 1 cut(s) 410
Sse9I AATT 3 cut(s) 91, 262, 335
SsiI CCGC 2 cut(s) 146, 423
SspMI CTAG 3 cut(s) 240, 411, 503
StyD4I CCNGG 1 cut(s) 192
TaiI ACGT 1 cut(s) 123
TaqI TCGA 1 cut(s) 39
TasI AATT 3 cut(s) 91, 262, 335
TatI WGTACW 1 cut(s) 157
TfiI GAWTC 1 cut(s) 461
Tru1I TTAA 3 cut(s) 365, 405, 488
Tru9I TTAA 3 cut(s) 365, 405, 488
TscAI CASTG 1 cut(s) 462
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 344
TspGWI ACGGA 1 cut(s) 87
TspRI CASTG 1 cut(s) 462
XagI CCTNNNNNAGG 1 cut(s) 230
XapI RAATTY 1 cut(s) 335
XbaI TCTAGA 1 cut(s) 502
XspI CTAG 3 cut(s) 240, 411, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.