RLG00000034227

Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0019927
Physical Location & Seq
Reverse (-)
38797652 .. 38802772
5121 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034227

Sequence Viewer

Length: 522 bp
ATGACGCAACATTTTGATGAAGACGGAAATCGAATGGTTGGGGTTTCTGCTCTTGGAGTAGCCTCTGATGACAACGTTCCAATCAAAAACTGCTGGGTTGGGGAGTTGGAGCCCAGAAGTGAGGACCAGAGCATGGATTTGCTTGAGCTCCGACATTGTTTTGCAATTTTCATGAAGTGCTTCTCTGCTTCTTCCTCACCCAAGATTAGCATGAGCCTCAAAGCCGGCATCATCGGCCTCCCTAATGTTGAGAATGGGAAGGCTCAAGCTGCCAATTTTCCGTTTTGTATGATAGAGCCAAACATAGGGATTGTTGCAGTTCCGGATCCGCGCCTGGCATCTTTGGAGCTTGTGGATATTGCTAGCCTTCTGAAGGGTGCTAGTCAAGGAGAGGATAATGCTAATTCTTTGAAAACTCAACTTGATCAACAAAAAGGTGTTGTTGATAATCTTGTCTCTAATACAAAGATCATTGAATTCTTTGGTGACCAGCTCTATTTATTATTAAAGTTGTTGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1 YchF-GTPase_C

Protein Analysis

174

Amino Acids

18.79

Weight (kDa)

4.68

Isoelectric Point (pI)

33.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019927)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0404851 RchiOBHm_Chr7g0235431
rosa_laevigata RLG00000034227
rosa_samantha Rh3CG159900 Rh3DG160500 Rh4CG448600 Rh7AG445500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 133
AccII CGCG 1 cut(s) 331
AccIII TCCGGA 1 cut(s) 322
AciI CCGC 1 cut(s) 329
AclI AACGTT 1 cut(s) 75
AclWI GGATC 2 cut(s) 320, 333
AcsI RAATTY 1 cut(s) 476
AcuI CTGAAG 1 cut(s) 392
AfiI CCNNNNNNNGG 3 cut(s) 133, 305, 373
AgsI TTSAA 2 cut(s) 412, 476
AjnI CCWGG 1 cut(s) 333
AluBI AGCT 4 cut(s) 148, 269, 349, 493
AluI AGCT 4 cut(s) 148, 269, 349, 493
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 1 cut(s) 460
AlwI GGATC 2 cut(s) 320, 333
Aor13HI TCCGGA 1 cut(s) 322
AoxI GGCC 1 cut(s) 235
ApeKI GCWGC 1 cut(s) 269
ApoI RAATTY 1 cut(s) 476
Asp700I GAANNNNTTC 1 cut(s) 179
AspLEI GCGC 1 cut(s) 333
AspS9I GGNCC 1 cut(s) 124
AsuHPI GGTGA 2 cut(s) 189, 497
AsuNHI GCTAGC 1 cut(s) 362
AvaII GGWCC 1 cut(s) 124
BamHI GGATCC 1 cut(s) 325
BanII GRGCYC 2 cut(s) 114, 150
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 256
BciT130I CCWGG 1 cut(s) 335
BclI TGATCA 1 cut(s) 424
BcoDI GTCTC 1 cut(s) 460
BfaI CTAG 2 cut(s) 363, 381
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
Bme1390I CCNGG 1 cut(s) 335
Bme18I GGWCC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 124
BmiI GGNNCC 2 cut(s) 111, 327
BmrFI CCNGG 1 cut(s) 335
BmsI GCATC 2 cut(s) 237, 347
BmtI GCTAGC 1 cut(s) 366
BpiI GAAGAC 1 cut(s) 27
BpuEI CTTGAG 2 cut(s) 164, 249
BsaWI WCCGGW 1 cut(s) 322
Bsc4I CCNNNNNNNGG 3 cut(s) 133, 305, 373
Bse118I RCCGGY 1 cut(s) 224
BseAI TCCGGA 1 cut(s) 322
BseBI CCWGG 1 cut(s) 335
BseLI CCNNNNNNNGG 3 cut(s) 133, 305, 373
BseXI GCAGC 1 cut(s) 256
BseYI CCCAGC 1 cut(s) 93
Bsh1236I CGCG 1 cut(s) 331
BshFI GGCC 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 2 cut(s) 225, 323
BslI CCNNNNNNNGG 3 cut(s) 133, 305, 373
BsmAI GTCTC 1 cut(s) 460
BsnI GGCC 1 cut(s) 237
Bsp1286I GDGCHC 2 cut(s) 114, 150
Bsp13I TCCGGA 1 cut(s) 322
Bsp143I GATC 3 cut(s) 325, 424, 468
BspACI CCGC 1 cut(s) 329
BspANI GGCC 1 cut(s) 237
BspEI TCCGGA 1 cut(s) 322
BspFNI CGCG 1 cut(s) 331
BspHI TCATGA 1 cut(s) 171
BspLI GGNNCC 2 cut(s) 111, 327
BspOI GCTAGC 1 cut(s) 366
BspPI GGATC 2 cut(s) 320, 333
BsrFI RCCGGY 1 cut(s) 224
BssAI RCCGGY 1 cut(s) 224
BssMI GATC 3 cut(s) 325, 424, 468
Bst2UI CCWGG 1 cut(s) 335
BstC8I GCNNGC 2 cut(s) 226, 364
BstEII GGTNACC 1 cut(s) 485
BstENI CCTNNNNNAGG 1 cut(s) 371
BstFNI CGCG 1 cut(s) 331
BstHHI GCGC 1 cut(s) 333
BstKTI GATC 3 cut(s) 328, 427, 471
BstMAI GTCTC 1 cut(s) 460
BstMBI GATC 3 cut(s) 325, 424, 468
BstMWI GCNNNNNNNGC 2 cut(s) 234, 269
BstNI CCWGG 1 cut(s) 335
BstPI GGTNACC 1 cut(s) 485
BstSCI CCNGG 1 cut(s) 333
BstUI CGCG 1 cut(s) 331
BstV1I GCAGC 1 cut(s) 256
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
BsuRI GGCC 1 cut(s) 237
Cac8I GCNNGC 2 cut(s) 226, 364
CciI TCATGA 1 cut(s) 171
CfoI GCGC 1 cut(s) 333
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 124
CseI GACGC 1 cut(s) 13
CviAII CATG 3 cut(s) 133, 172, 211
DpnI GATC 3 cut(s) 327, 426, 470
DpnII GATC 3 cut(s) 325, 424, 468
Ecl136II GAGCTC 1 cut(s) 148
Eco24I GRGCYC 2 cut(s) 114, 150
Eco47I GGWCC 1 cut(s) 124
Eco53kI GAGCTC 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 392
Eco91I GGTNACC 1 cut(s) 485
EcoICRI GAGCTC 1 cut(s) 148
EcoNI CCTNNNNNAGG 1 cut(s) 371
EcoO65I GGTNACC 1 cut(s) 485
EcoRI GAATTC 1 cut(s) 476
EcoRII CCWGG 1 cut(s) 333
EcoT38I GRGCYC 2 cut(s) 114, 150
FaeI CATG 3 cut(s) 136, 175, 214
FaiI YATR 5 cut(s) 134, 173, 212, 290, 305
FatI CATG 3 cut(s) 132, 171, 210
FbaI TGATCA 1 cut(s) 424
Fnu4HI GCNGC 1 cut(s) 270
FriOI GRGCYC 2 cut(s) 114, 150
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 2 cut(s) 363, 381
GlaI GCGC 1 cut(s) 332
GluI GCNGC 1 cut(s) 270
GsaI CCCAGC 1 cut(s) 97
HaeIII GGCC 1 cut(s) 237
HapII CCGG 2 cut(s) 225, 323
HgaI GACGC 1 cut(s) 13
HhaI GCGC 1 cut(s) 333
Hin1II CATG 3 cut(s) 136, 175, 214
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HpaII CCGG 2 cut(s) 225, 323
HphI GGTGA 2 cut(s) 189, 497
Hpy188I TCNGA 3 cut(s) 67, 152, 372
Hpy188III TCNNGA 2 cut(s) 172, 323
HpyAV CCTTC 3 cut(s) 253, 367, 377
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 2 cut(s) 164, 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 234, 269
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 3 cut(s) 136, 175, 214
HspAI GCGC 1 cut(s) 331
Kpn2I TCCGGA 1 cut(s) 322
KroI GCCGGC 1 cut(s) 224
KroNI GCCGGC 1 cut(s) 226
Ksp22I TGATCA 1 cut(s) 424
Kzo9I GATC 3 cut(s) 325, 424, 468
LmnI GCTCC 3 cut(s) 109, 153, 346
LpnPI CCDG 8 cut(s) 79, 127, 140, 238, 320, 336, 347, 503
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 2 cut(s) 237, 347
MaeI CTAG 2 cut(s) 363, 381
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 485
MalI GATC 3 cut(s) 327, 426, 470
MboI GATC 3 cut(s) 325, 424, 468
MboII GAAGA 2 cut(s) 32, 183
MflI RGATCY 1 cut(s) 325
MhlI GDGCHC 2 cut(s) 114, 150
MluCI AATT 4 cut(s) 165, 274, 403, 476
MmeI TCCRAC 2 cut(s) 87, 175
MnlI CCTC 6 cut(s) 73, 115, 205, 227, 248, 385
MroI TCCGGA 1 cut(s) 322
MroNI GCCGGC 1 cut(s) 224
MroXI GAANNNNTTC 1 cut(s) 179
MseI TTAA 2 cut(s) 506, 520
MslI CAYNNNNRTG 1 cut(s) 15
MspI CCGG 2 cut(s) 225, 323
MspR9I CCNGG 1 cut(s) 335
MvaI CCWGG 1 cut(s) 335
MvnI CGCG 1 cut(s) 331
MwoI GCNNNNNNNGC 2 cut(s) 234, 269
NaeI GCCGGC 1 cut(s) 226
NdeII GATC 3 cut(s) 325, 424, 468
NgoMIV GCCGGC 1 cut(s) 224
NheI GCTAGC 1 cut(s) 362
NlaIII CATG 3 cut(s) 136, 175, 214
NlaIV GGNNCC 2 cut(s) 111, 327
NmuCI GTSAC 1 cut(s) 485
PagI TCATGA 1 cut(s) 171
PdiI GCCGGC 1 cut(s) 226
PdmI GAANNNNTTC 1 cut(s) 179
PflMI CCANNNNNTGG 1 cut(s) 133
PkrI GCNGC 1 cut(s) 271
Psp124BI GAGCTC 1 cut(s) 150
Psp1406I AACGTT 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 333
PspEI GGTNACC 1 cut(s) 485
PspFI CCCAGC 1 cut(s) 93
PspGI CCWGG 1 cut(s) 333
PspN4I GGNNCC 2 cut(s) 111, 327
PspPI GGNCC 1 cut(s) 124
PsuI RGATCY 1 cut(s) 325
RseI CAYNNNNRTG 1 cut(s) 15
SacI GAGCTC 1 cut(s) 150
SaqAI TTAA 2 cut(s) 506, 520
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 3 cut(s) 325, 424, 468
Sau96I GGNCC 1 cut(s) 124
ScrFI CCNGG 1 cut(s) 335
SduI GDGCHC 2 cut(s) 114, 150
SetI ASST 6 cut(s) 78, 150, 271, 351, 439, 495
SfaNI GCATC 2 cut(s) 237, 347
SinI GGWCC 1 cut(s) 124
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 2 cut(s) 143, 264
SmoI CTYRAG 2 cut(s) 143, 264
Sse9I AATT 4 cut(s) 165, 274, 403, 476
SsiI CCGC 1 cut(s) 329
SspMI CTAG 2 cut(s) 363, 381
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 333
TaiI ACGT 1 cut(s) 78
TaqI TCGA 1 cut(s) 31
TasI AATT 4 cut(s) 165, 274, 403, 476
Tru1I TTAA 2 cut(s) 506, 520
Tru9I TTAA 2 cut(s) 506, 520
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 1 cut(s) 269
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 3 cut(s) 33, 160, 188
TspGWI ACGGA 2 cut(s) 39, 270
Van91I CCANNNNNTGG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 124
XagI CCTNNNNNAGG 1 cut(s) 371
XapI RAATTY 1 cut(s) 476
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 2 cut(s) 363, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.