Pentatricopeptide repeat-containing protein At2g45350, chloroplastic
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0415431 RchiOBHm_Chr5g0040881 |
| rosa_multiflora | Rmu_ssc0000416.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00039820 Rroxscaffold_5G00359190 |
| rosa_rugosa | Rorug05G0188300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 186 |
| AcsI | RAATTY | 1 cut(s) | 55 |
| AjnI | CCWGG | 1 cut(s) | 320 |
| AluBI | AGCT | 3 cut(s) | 284, 294, 327 |
| AluI | AGCT | 3 cut(s) | 284, 294, 327 |
| ApeKI | GCWGC | 1 cut(s) | 98 |
| ApoI | RAATTY | 1 cut(s) | 55 |
| AspLEI | GCGC | 1 cut(s) | 196 |
| AsuII | TTCGAA | 1 cut(s) | 330 |
| BauI | CACGAG | 1 cut(s) | 102 |
| BbvI | GCAGC | 1 cut(s) | 85 |
| BccI | CCATC | 1 cut(s) | 55 |
| BciT130I | CCWGG | 1 cut(s) | 322 |
| BfaI | CTAG | 1 cut(s) | 38 |
| BisI | GCNGC | 1 cut(s) | 99 |
| BlsI | GCNGC | 1 cut(s) | 100 |
| Bme1390I | CCNGG | 1 cut(s) | 322 |
| BmrFI | CCNGG | 1 cut(s) | 322 |
| BmsI | GCATC | 2 cut(s) | 58, 85 |
| Bpu14I | TTCGAA | 1 cut(s) | 330 |
| BseBI | CCWGG | 1 cut(s) | 322 |
| BseXI | GCAGC | 1 cut(s) | 85 |
| BsgI | GTGCAG | 1 cut(s) | 84 |
| Bsp119I | TTCGAA | 1 cut(s) | 330 |
| Bsp143I | GATC | 2 cut(s) | 60, 138 |
| BspT104I | TTCGAA | 1 cut(s) | 330 |
| BssMI | GATC | 2 cut(s) | 60, 138 |
| BssSI | CACGAG | 1 cut(s) | 102 |
| Bst2BI | CACGAG | 1 cut(s) | 102 |
| Bst2UI | CCWGG | 1 cut(s) | 322 |
| BstBI | TTCGAA | 1 cut(s) | 330 |
| BstC8I | GCNNGC | 2 cut(s) | 6, 10 |
| BstHHI | GCGC | 1 cut(s) | 196 |
| BstKTI | GATC | 2 cut(s) | 63, 141 |
| BstMBI | GATC | 2 cut(s) | 60, 138 |
| BstNI | CCWGG | 1 cut(s) | 322 |
| BstNSI | RCATGY | 1 cut(s) | 12 |
| BstSCI | CCNGG | 1 cut(s) | 320 |
| BstV1I | GCAGC | 1 cut(s) | 85 |
| Cac8I | GCNNGC | 2 cut(s) | 6, 10 |
| CfoI | GCGC | 1 cut(s) | 196 |
| CviAII | CATG | 1 cut(s) | 9 |
| CviJI | RGCY | 3 cut(s) | 284, 294, 327 |
| CviKI_1 | RGCY | 3 cut(s) | 284, 294, 327 |
| DpnI | GATC | 2 cut(s) | 62, 140 |
| DpnII | GATC | 2 cut(s) | 60, 138 |
| EcoRI | GAATTC | 1 cut(s) | 55 |
| EcoRII | CCWGG | 1 cut(s) | 320 |
| FaeI | CATG | 1 cut(s) | 12 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 268, 300 |
| FatI | CATG | 1 cut(s) | 8 |
| Fnu4HI | GCNGC | 1 cut(s) | 99 |
| Fsp4HI | GCNGC | 1 cut(s) | 99 |
| FspBI | CTAG | 1 cut(s) | 38 |
| GlaI | GCGC | 1 cut(s) | 195 |
| GluI | GCNGC | 1 cut(s) | 99 |
| HhaI | GCGC | 1 cut(s) | 196 |
| Hin1II | CATG | 1 cut(s) | 12 |
| Hin6I | GCGC | 1 cut(s) | 194 |
| HinP1I | GCGC | 1 cut(s) | 194 |
| HincII | GTYRAC | 1 cut(s) | 316 |
| HindII | GTYRAC | 1 cut(s) | 316 |
| HindIII | AAGCTT | 1 cut(s) | 282 |
| Hpy166II | GTNNAC | 1 cut(s) | 316 |
| Hpy8I | GTNNAC | 1 cut(s) | 316 |
| HpyCH4V | TGCA | 2 cut(s) | 8, 101 |
| Hsp92II | CATG | 1 cut(s) | 12 |
| HspAI | GCGC | 1 cut(s) | 194 |
| Kzo9I | GATC | 2 cut(s) | 60, 138 |
| LmnI | GCTCC | 1 cut(s) | 324 |
| LpnPI | CCDG | 2 cut(s) | 307, 334 |
| Lsp1109I | GCAGC | 1 cut(s) | 85 |
| LweI | GCATC | 2 cut(s) | 58, 85 |
| MaeI | CTAG | 1 cut(s) | 38 |
| MalI | GATC | 2 cut(s) | 62, 140 |
| MboI | GATC | 2 cut(s) | 60, 138 |
| MluCI | AATT | 2 cut(s) | 27, 55 |
| MseI | TTAA | 2 cut(s) | 270, 306 |
| MspR9I | CCNGG | 1 cut(s) | 322 |
| MvaI | CCWGG | 1 cut(s) | 322 |
| NdeII | GATC | 2 cut(s) | 60, 138 |
| NlaIII | CATG | 1 cut(s) | 12 |
| NspI | RCATGY | 1 cut(s) | 12 |
| NspV | TTCGAA | 1 cut(s) | 330 |
| PaeI | GCATGC | 1 cut(s) | 12 |
| PkrI | GCNGC | 1 cut(s) | 100 |
| PsiI | TTATAA | 1 cut(s) | 186 |
| Psp6I | CCWGG | 1 cut(s) | 320 |
| PspGI | CCWGG | 1 cut(s) | 320 |
| SaqAI | TTAA | 2 cut(s) | 270, 306 |
| SatI | GCNGC | 1 cut(s) | 99 |
| Sau3AI | GATC | 2 cut(s) | 60, 138 |
| ScrFI | CCNGG | 1 cut(s) | 322 |
| SetI | ASST | 4 cut(s) | 286, 296, 323, 329 |
| SfaNI | GCATC | 2 cut(s) | 58, 85 |
| SfuI | TTCGAA | 1 cut(s) | 330 |
| SphI | GCATGC | 1 cut(s) | 12 |
| Sse9I | AATT | 2 cut(s) | 27, 55 |
| SspMI | CTAG | 1 cut(s) | 38 |
| StyD4I | CCNGG | 1 cut(s) | 320 |
| TaqI | TCGA | 3 cut(s) | 59, 114, 330 |
| TasI | AATT | 2 cut(s) | 27, 55 |
| Tru1I | TTAA | 2 cut(s) | 270, 306 |
| Tru9I | TTAA | 2 cut(s) | 270, 306 |
| TseI | GCWGC | 1 cut(s) | 98 |
| TspDTI | ATGAA | 5 cut(s) | 39, 132, 256, 277, 324 |
| XapI | RAATTY | 1 cut(s) | 55 |
| XceI | RCATGY | 1 cut(s) | 12 |
| XspI | CTAG | 1 cut(s) | 38 |