Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000416.1

Orthogroup ID

OG0020533

Physical Location & Seq

Genomic Coordinates Reverse (-)

36863 .. 37841

Gene Structure 979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000416.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atgcttgcacgccaagtatttgatgaaattacccaaccagatttgccatcttggaattccatcatagatgcatatgcgaaagtgggtttgattgatgctgcaggagaggtgtttgatgaaatgcccaagagaaatgtgatctcttggagttgtataataaaggtcattagtccatcgcaggagatcaactttacagttttacttttccaagatctcatggtacgtaggcggcggccgaatcgccgcagattgatcaaagaattgaatcagcgtgggaggcaaccggaggaggatgaggaggacagtggagcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

104

Amino Acids

12.07

Weight (kDa)

5.17

Isoelectric Point (pI)

85.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020533)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0415431 RchiOBHm_Chr5g0040881
rosa_multiflora	Rmu_ssc0000416.1_g000005
rosa_roxburghii	Rroxscaffold_1G00039820 Rroxscaffold_5G00359190
rosa_rugosa	Rorug05G0188300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	229, 232, 244
AcoI	YGGCCR	1 cut(s)	233
AcsI	RAATTY	1 cut(s)	55
AfaI	GTAC	1 cut(s)	222
AgsI	TTSAA	1 cut(s)	265
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
AoxI	GGCC	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	3 cut(s)	55, 68, 181
BclI	TGATCA	1 cut(s)	252
BfmI	CTRYAG	1 cut(s)	99
BglII	AGATCT	1 cut(s)	211
BisI	GCNGC	4 cut(s)	99, 230, 233, 244
BlsI	GCNGC	4 cut(s)	100, 231, 234, 245
BmsI	GCATC	2 cut(s)	58, 85
BsaAI	YACGTR	1 cut(s)	224
BsaWI	WCCGGW	1 cut(s)	283
BseGI	GGATG	1 cut(s)	298
BseRI	GAGGAG	2 cut(s)	302, 311
BseX3I	CGGCCG	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	85
Bsh1285I	CGRYCG	1 cut(s)	236
BshFI	GGCC	1 cut(s)	235
BsiEI	CGRYCG	1 cut(s)	236
BsiSI	CCGG	1 cut(s)	284
BsnI	GGCC	1 cut(s)	235
Bsp143I	GATC	4 cut(s)	138, 183, 211, 252
BspACI	CCGC	3 cut(s)	229, 232, 244
BspANI	GGCC	1 cut(s)	235
BspMAI	CTGCAG	1 cut(s)	103
BssMI	GATC	4 cut(s)	138, 183, 211, 252
Bst4CI	ACNGT	2 cut(s)	196, 305
BstBAI	YACGTR	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	6, 10
BstF5I	GGATG	1 cut(s)	298
BstKTI	GATC	4 cut(s)	141, 186, 214, 255
BstMBI	GATC	4 cut(s)	138, 183, 211, 252
BstMCI	CGRYCG	1 cut(s)	236
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	99
BstSNI	TACGTA	1 cut(s)	224
BstV1I	GCAGC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BstZI	CGGCCG	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	235
BtgZI	GCGATG	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	310
Cac8I	GCNNGC	2 cut(s)	6, 10
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	2 cut(s)	235, 311
CviKI_1	RGCY	2 cut(s)	235, 311
CviQI	GTAC	1 cut(s)	221
DpnI	GATC	4 cut(s)	140, 185, 213, 254
DpnII	GATC	4 cut(s)	138, 183, 211, 252
EaeI	YGGCCR	1 cut(s)	233
EagI	CGGCCG	1 cut(s)	233
EclXI	CGGCCG	1 cut(s)	233
Eco105I	TACGTA	1 cut(s)	224
Eco52I	CGGCCG	1 cut(s)	233
EcoRI	GAATTC	1 cut(s)	55
EcoT22I	ATGCAT	1 cut(s)	73
FaeI	CATG	1 cut(s)	220
FaiI	YATR	5 cut(s)	65, 73, 75, 155, 218
FatI	CATG	1 cut(s)	216
FauNDI	CATATG	1 cut(s)	73
FbaI	TGATCA	1 cut(s)	252
Fnu4HI	GCNGC	4 cut(s)	99, 230, 233, 244
FokI	GGATG	1 cut(s)	305
Fsp4HI	GCNGC	4 cut(s)	99, 230, 233, 244
GluI	GCNGC	4 cut(s)	99, 230, 233, 244
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	1 cut(s)	284
Hin1II	CATG	1 cut(s)	220
HinfI	GANTC	2 cut(s)	238, 265
HpaII	CCGG	1 cut(s)	284
HpyCH4III	ACNGT	2 cut(s)	196, 305
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	3 cut(s)	8, 71, 101
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
HpySE526I	ACGT	1 cut(s)	223
Hsp92II	CATG	1 cut(s)	220
Ksp22I	TGATCA	1 cut(s)	252
Kzo9I	GATC	4 cut(s)	138, 183, 211, 252
LmnI	GCTCC	1 cut(s)	308
LpnPI	CCDG	4 cut(s)	51, 87, 164, 297
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	2 cut(s)	58, 85
MaeII	ACGT	1 cut(s)	223
MalI	GATC	4 cut(s)	140, 185, 213, 254
MboI	GATC	4 cut(s)	138, 183, 211, 252
MflI	RGATCY	1 cut(s)	211
MluCI	AATT	3 cut(s)	27, 55, 260
MnlI	CCTC	6 cut(s)	100, 270, 280, 283, 289, 292
Mph1103I	ATGCAT	1 cut(s)	73
MseI	TTAA	1 cut(s)	313
MspI	CCGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	1 cut(s)	277
NdeI	CATATG	1 cut(s)	73
NdeII	GATC	4 cut(s)	138, 183, 211, 252
NlaIII	CATG	1 cut(s)	220
NsiI	ATGCAT	1 cut(s)	73
PfeI	GAWTC	2 cut(s)	238, 265
PkrI	GCNGC	4 cut(s)	100, 231, 234, 245
Ppu21I	YACGTR	1 cut(s)	224
PstI	CTGCAG	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	313
SatI	GCNGC	4 cut(s)	99, 230, 233, 244
Sau3AI	GATC	4 cut(s)	138, 183, 211, 252
SetI	ASST	4 cut(s)	111, 165, 226, 313
SfaNI	GCATC	2 cut(s)	58, 85
SfcI	CTRYAG	1 cut(s)	99
SnaBI	TACGTA	1 cut(s)	224
Sse9I	AATT	3 cut(s)	27, 55, 260
SsiI	CCGC	3 cut(s)	229, 232, 244
TaaI	ACNGT	2 cut(s)	196, 305
TaiI	ACGT	1 cut(s)	226
TasI	AATT	3 cut(s)	27, 55, 260
TauI	GCSGC	3 cut(s)	232, 235, 246
TfiI	GAWTC	2 cut(s)	238, 265
Tru1I	TTAA	1 cut(s)	313
Tru9I	TTAA	1 cut(s)	313
TscAI	CASTG	1 cut(s)	310
TseI	GCWGC	1 cut(s)	98
TspDTI	ATGAA	2 cut(s)	39, 132
TspRI	CASTG	1 cut(s)	310
XapI	RAATTY	1 cut(s)	55
Zsp2I	ATGCAT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.