Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0020533

Physical Location & Seq

Genomic Coordinates Reverse (-)

18284165 .. 18285019

Gene Structure 855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0188300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAAGAAGATCAGTTTGCTATTAAGGAAGTGCAAGAGCTTGTCAAGCCAGCTAGGGAGATCTTCATCGTATAGCAGTCTACGTTCCACATCGACTAGAGAAGATTTGTATGATGGCAACATCATGAATGAGAATCATCAGCAAACTACTATATTTGTTGGAAGCACCAGAAAGCGTTACGTGATCAGCTCCAAGTACCTGAAGCATCCTTTGTTGAATGCTTTGATCGAGAAGTCATCGAATAAGCGAAATAACAATCGAGGAGATGATCATGATCATGAGGATATCTTGGTGAAGTGTGAGGTGGTTCTCTTTGATCACTTGTTATGGATGCTGGAAAATGGAGATCCAAGCTTTGGTGGTACTTCAGAGTCTTTGGAGGAACTAGCTGAACTCTATGAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

135

Amino Acids

15.5

Weight (kDa)

6.51

Isoelectric Point (pI)

56.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	43 - 112	7.2e-14	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0020533)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0415431 RchiOBHm_Chr5g0040881
rosa_multiflora	Rmu_ssc0000416.1_g000005
rosa_roxburghii	Rroxscaffold_1G00039820 Rroxscaffold_5G00359190
rosa_rugosa	Rorug05G0188300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	356
AccI	GTMKAC	1 cut(s)	79
AclWI	GGATC	1 cut(s)	341
AcuI	CTGAAG	2 cut(s)	221, 351
AfaI	GTAC	2 cut(s)	197, 364
AfiI	CCNNNNNNNGG	1 cut(s)	356
AgsI	TTSAA	1 cut(s)	217
AluBI	AGCT	5 cut(s)	39, 52, 189, 354, 389
AluI	AGCT	5 cut(s)	39, 52, 189, 354, 389
AlwI	GGATC	1 cut(s)	341
AsuHPI	GGTGA	1 cut(s)	304
BccI	CCATC	1 cut(s)	107
BclI	TGATCA	4 cut(s)	183, 268, 274, 316
BfaI	CTAG	3 cut(s)	53, 96, 386
BglII	AGATCT	1 cut(s)	59
BmsI	GCATC	2 cut(s)	214, 321
BsaAI	YACGTR	1 cut(s)	181
BsaBI	GATNNNNATC	2 cut(s)	64, 273
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse8I	GATNNNNATC	2 cut(s)	64, 273
BseGI	GGATG	2 cut(s)	205, 336
BseJI	GATNNNNATC	2 cut(s)	64, 273
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseRI	GAGGAG	1 cut(s)	276
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmI	GAATGC	1 cut(s)	223
Bsp143I	GATC	8 cut(s)	9, 59, 183, 225, 268, 274, 316, 346
BspHI	TCATGA	3 cut(s)	123, 271, 277
BspPI	GGATC	1 cut(s)	341
BssMI	GATC	8 cut(s)	9, 59, 183, 225, 268, 274, 316, 346
BstBAI	YACGTR	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	50
BstF5I	GGATG	2 cut(s)	205, 336
BstKTI	GATC	8 cut(s)	12, 62, 186, 228, 271, 277, 319, 349
BstMBI	GATC	8 cut(s)	9, 59, 183, 225, 268, 274, 316, 346
BstMWI	GCNNNNNNNGC	1 cut(s)	45
BstX2I	RGATCY	2 cut(s)	59, 346
BstYI	RGATCY	2 cut(s)	59, 346
BtsCI	GGATG	2 cut(s)	205, 336
Cac8I	GCNNGC	1 cut(s)	50
CciI	TCATGA	3 cut(s)	123, 271, 277
Csp6I	GTAC	2 cut(s)	196, 363
CviAII	CATG	3 cut(s)	124, 272, 278
CviJI	RGCY	6 cut(s)	39, 48, 52, 189, 354, 389
CviKI_1	RGCY	6 cut(s)	39, 48, 52, 189, 354, 389
CviQI	GTAC	2 cut(s)	196, 363
DpnI	GATC	8 cut(s)	11, 61, 185, 227, 270, 276, 318, 348
DpnII	GATC	8 cut(s)	9, 59, 183, 225, 268, 274, 316, 346
Eco32I	GATATC	1 cut(s)	286
Eco57I	CTGAAG	2 cut(s)	221, 351
EcoRV	GATATC	1 cut(s)	286
FaeI	CATG	3 cut(s)	127, 275, 281
FaiI	YATR	8 cut(s)	72, 111, 125, 152, 273, 279, 328, 399
FatI	CATG	3 cut(s)	123, 271, 277
FbaI	TGATCA	4 cut(s)	183, 268, 274, 316
FblI	GTMKAC	1 cut(s)	79
FokI	GGATG	2 cut(s)	192, 343
FspBI	CTAG	3 cut(s)	53, 96, 386
Hin1II	CATG	3 cut(s)	127, 275, 281
HindIII	AAGCTT	1 cut(s)	352
HinfI	GANTC	2 cut(s)	133, 371
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188I	TCNGA	1 cut(s)	370
Hpy188III	TCNNGA	4 cut(s)	124, 229, 272, 278
Hpy8I	GTNNAC	1 cut(s)	80
HpyCH4IV	ACGT	2 cut(s)	82, 180
HpyCH4V	TGCA	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	1 cut(s)	45
HpySE526I	ACGT	2 cut(s)	82, 180
Hsp92II	CATG	3 cut(s)	127, 275, 281
Ksp22I	TGATCA	4 cut(s)	183, 268, 274, 316
Kzo9I	GATC	8 cut(s)	9, 59, 183, 225, 268, 274, 316, 346
LmnI	GCTCC	1 cut(s)	194
LpnPI	CCDG	4 cut(s)	62, 181, 212, 320
LweI	GCATC	2 cut(s)	214, 321
MaeI	CTAG	3 cut(s)	53, 96, 386
MaeII	ACGT	2 cut(s)	82, 180
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	8 cut(s)	11, 61, 185, 227, 270, 276, 318, 348
MboI	GATC	8 cut(s)	9, 59, 183, 225, 268, 274, 316, 346
MboII	GAAGA	4 cut(s)	16, 19, 54, 113
MflI	RGATCY	2 cut(s)	59, 346
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	1 cut(s)	139
MnlI	CCTC	4 cut(s)	254, 274, 295, 373
MseI	TTAA	1 cut(s)	23
MslI	CAYNNNNRTG	1 cut(s)	276
Mva1269I	GAATGC	1 cut(s)	223
MwoI	GCNNNNNNNGC	1 cut(s)	45
NdeII	GATC	8 cut(s)	9, 59, 183, 225, 268, 274, 316, 346
NlaIII	CATG	3 cut(s)	127, 275, 281
PagI	TCATGA	3 cut(s)	123, 271, 277
PctI	GAATGC	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	133
PflMI	CCANNNNNTGG	1 cut(s)	356
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
Ppu21I	YACGTR	1 cut(s)	181
PsuI	RGATCY	2 cut(s)	59, 346
RsaI	GTAC	2 cut(s)	197, 364
RsaNI	GTAC	2 cut(s)	196, 363
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	23
Sau3AI	GATC	8 cut(s)	9, 59, 183, 225, 268, 274, 316, 346
SchI	GAGTC	1 cut(s)	380
SetI	ASST	9 cut(s)	41, 54, 85, 183, 191, 201, 306, 356, 391
SfaNI	GCATC	2 cut(s)	214, 321
SmiMI	CAYNNNNRTG	1 cut(s)	276
SspMI	CTAG	3 cut(s)	53, 96, 386
TaiI	ACGT	2 cut(s)	85, 183
TaqI	TCGA	4 cut(s)	92, 228, 239, 259
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TspDTI	ATGAA	3 cut(s)	17, 54, 140
Van91I	CCANNNNNTGG	1 cut(s)	356
XmiI	GTMKAC	1 cut(s)	79
XspI	CTAG	3 cut(s)	53, 96, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.